Comparative analyses of foregut and hindgut bacterial communities in hoatzins and cows

Foregut fermentation occurs in mammalian ruminants and in one bird, the South American folivorous hoatzin. This bird has an enlarged crop with a function analogous to the rumen, where foregut microbes degrade the otherwise indigestible plant matter, providing energy to the host from foregut fermentation, in addition to the fermentation that occurs in their hindguts (cecum/colon). As foregut fermentation represents an evolutionary convergence between hoatzins and ruminants, our aim was to compare the community structure of foregut and hindgut bacterial communities in the cow and hoatzin to evaluate the influences of host phylogeny and organ function in shaping the gut microbiome. The approach used was to hybridize amplified bacterial ribosomal RNA genes onto a high-density microarray (PhyloChip). The results show that the microbial communities cluster primarily by functional environment (foreguts cluster separately from hindguts) and then by host. Bacterial community diversity was higher in the cow than in the hoatzin. Overall, compared with hindguts, foreguts have higher proportions of Bacteroidetes and Spirochaetes, and lower proportions of Firmicutes and Proteobacteria. The main host differences in gut bacterial composition include a higher representation of Spirochaetes, Synergistetes and Verrucomicrobia in the cow. Despite the significant differences in host phylogeny, body size, physiology and diet, the function seems to shape the microbial communities involved in fermentation. Regardless of the independent origin of foregut fermentation in birds and mammals, organ function has led to convergence of the microbial community structure in phylogenetically distant hosts.     

Molecular adaptation of a leaf-eating bird: stomach lysozyme of the hoatzin

This report describes a lysozyme expressed at high levels in the stomach of the hoatzin, the only known foregut-fermenting bird. Evolutionary comparison places it among the calcium-binding lysozymes rather than among the conventional types. Conventional lysozymes were recruited as digestive enzymes twice in the evolution of mammalian foregut fermenters, and these independently recruited lysozymes share convergent structural changes attributed to selective pressures in the stomach. Biochemical convergence and parallel amino acid replacements are observed in the hoatzin stomach lysozyme even though it has a different genetic origin from the mammalian examples and has undergone more than 300 million years of independent evolution.      

Digestive efficiency of the Hoatzin, Opisthocomus hoazin: a folivorous bird with foregut fermentation

The Hoatzin Opisthocomus hoazin is the only known bird with a well-developed foregut plant fermentation system; most fermentation takes place in the crop and caudal oesophagus. To test Hoatzin digestive efficiency, balance (total collection) trials with captive Hoatzins were made using two experimental diets of different composition and fibre content. Dry matter (DM) intakes were similar for the diets (mean = 62.8 g DM/kg body mass/ day). Average DM, organic matter and nitrogen digestibilities were not significantly different between diets, with average values of 72.9%, 75.0% and 78.3%, respectively. In vitro organic matter digestibilities by cow ruminal inoculum were very similar to organic matter digestibilities in live Hoatzins for both diets. Fibre digestibility was among the highest recorded for herbivorous birds. Cellulose and acid detergent fibre digestibilities were 58.8% and 52.7%, respectively. Neutral detergent fibre (NDF) digestibility differed among diets—the higher the NDF content of the diet, the higher the NDF digestibility. The NDF digestibilities were 37.9% and 70.9% for the two diets with NDF concentrations of 32.4% and 37.3%, respectively. Differences in NDF digestibility can be attributed to the different concentrations of hemicellulose in the experimental diets. The high overall digestibility by captive Hoatzins is higher than values previously reported for other avian herbivores but similar to those of foregut-fermenting mammals on similar diets. The unique digestive strategy of the Hoatzin maximizes digestion of cell wall and cell contents. The high digestive efficiency in the Hoatzin is not predicted by allometric models of fibre digestion as a function of body mass. Other nutritional benefits, such as detoxification of plant secondary compounds and microbial synthesis of essential amino acids and vitamins, may explain the evolution of foregut fermentation in this avian folivore.     

A review on the impacts of feral cats (Felis silvestris catus) in the Canary Islands: implications for the conservation of its endangered fauna

Feral cats have been directly responsible for the extinction of numerous species on islands worldwide, including endemic species of mammals, birds and reptiles. The diet of feral cats in the main habitats of the Canary Islands, as generally occurred on oceanic islands, is mainly composed of introduced mammals, and native species of birds, reptiles and insects. The impact of feral cat upon the endangered species was assessed by evaluating their relative abundance in the cats’ diet and by considering their current conservation status. A total of 68 different preys were identified at species level in all studies carried out in the Canary Islands (5 mammals, 16 birds, 15 reptiles and 32 invertebrates). From all the species preyed by feral cats in the Canary Islands, only four of them are considered threatened by the IUCN Red List of Threatened Species: one endemic bird Saxicola dacotiae and three endemic giant lizards, Gallotia simonyi, Gallotia intermedia, and Gallotia gomerana. Although some efforts on management control have been carried out, it is necessary to enforce these conservation activities on those areas of Tenerife, La Gomera and El Hierro where giant lizards are still present. Furthermore some local areas where endangered bird species are highly predated should be protected. Nevertheless, it is important to take into account the presence of other introduced species such as rats, mice or rabbits in order to avoid problems derived from the hyperpredation process and mesopredator release effect.     

NOTES ON SOME BIRDS FROM THE HIGHLANDS OF BASUTOLAND

Dean, W. R. J. &; MacDonald, I. A. W. 1981. A review of African birds feeding in association with mammals. Ostrich 52:135–155.

Feeding associations between African birds and mammals are defined. 96 species of birds show, or possibly show, some form of feeding associations with mammals. Five major categories of feeding association are identified, which differ in relative importance in the various habitat types of Africa. In the most widespread and common feeding association the bird obtains cryptic prey items flushed by the mammal, The opportunistic nature of most bird/mammal feeding associations is stressed. Hypothetical courses In the evolution of the more complex feeding associations are discussed. The possible significance of bird/mammal feeding associations in their biology and conservation is outlined. The lack of quantitative information on these feeding associations limits the conclusions that can be drawn, although their significance for the obligate ectoparasite gleaners, Buphagus species, appears to be clear.     

Hematozoa in endemic subspecies of common kestrel in the Cape Verde Islands

We examined 130 Common Kestrel (Falco tinnunculus) representing two endemic subspecies and nine resident island populations on the Cape Verde archipelago between 1996 and 1999 to study diversity, prevalence, and intensity of hematozoa. Hematozoan diversity was very low; we detected only Plasmodium fallax, a species that is rarely found in Falconoformes, and, possibly, Haemoproteus brachiatus. Moreover, prevalence of Plasmodium fallax was low (1.5%) with a mean intensity of infection of 0.05 protozoa/10(-3) erythrocytes. Only one bird (0.8%) was infected with a gametocyte that was most likely Haemoproteus brachiatus; the intensity in this infected bird was 1.5 protozoa/10(-3) erythrocytes. A single parasite or two parasites were observed in blood smears in four additional birds, but identification to genus was not possible. This is the first record of blood parasites in birds on the Cape Verde Archipelago. The low prevalence of these parasites might be because of arid and less-favorable conditions for the pathogen's vectors. The sedentary nature and high level of isolation of the island kestrel populations are also factors that could decrease the probability of infection.     

Microflora in the crop of adult Dusky-billed Parrotlets (Forpus modestus)

We isolated aerobic and anaerobic facultative bacteria inhabiting the crop of adult Dusky-billed Parrotlets (Forpus modestus). We looked for bacteria capable of hydrolyzing starch, the most abundant polysaccharide in seeds. We compared our results with bacteria isolated from the crop of three species of doves with granivorous–frugivorous diet and three carnivore birds. Forpus modestus has 10⁷–10⁸ of colony formation units (CFU); these values were higher by one to three orders of magnitude compared with those observed in the other species studied. Bacillus pumilus, one of the most abundant bacteria isolated in F. modestus (6.03 × 10⁶ CFU), was capable of hydrolyzing starch. We found higher diversity and abundance of bacteria in granivorous than in carnivorous birds or birds without a developed crop. Additionally, we found yeasts in the three species of doves. These findings suggest microbial activity in the crop, although its importance in food digestion needs to be determined.     

Marked host specificity and lack of phylogeographic population structure of Campylobacter jejuni in wild birds

Zoonotic pathogens often infect several animal species, and gene flow among populations infecting different host species may affect the biological traits of the pathogen including host specificity, transmissibility and virulence. The bacterium Campylobacter jejuni is a widespread zoonotic multihost pathogen, which frequently causes gastroenteritis in humans. Poultry products are important transmission vehicles to humans, but the bacterium is common in other domestic and wild animals, particularly birds, which are a potential infection source. Population genetic studies of C. jejuni have mainly investigated isolates from humans and domestic animals, so to assess C. jejuni population structure more broadly and investigate host adaptation, 928 wild bird isolates from Europe and Australia were genotyped by multilocus sequencing and compared to the genotypes recovered from 1366 domestic animal and human isolates. Campylobacter jejuni populations from different wild bird species were distinct from each other and from those from domestic animals and humans, and the host species of wild bird was the major determinant of C. jejuni genotype, while geographic origin was of little importance. By comparison, C. jejuni differentiation was restricted between more phylogenetically diverse farm animals, indicating that domesticated animals may represent a novel niche for C. jejuni and thereby driving the evolution of those bacteria as they exploit this niche. Human disease is dominated by isolates from this novel domesticated animal niche.     

Outbreak of trichomoniasis in a woodpigeon (<Emphasis Type="Italic">Columba palumbus</Emphasis>) wintering roost

Large numbers of woodpigeons (Columba palumbus) winter each year in southwestern Spain and Portugal, where they feed on acorns. Although mortality in these wintering roosts is generally low, in winter and spring 2001 approximately 2,600 woodpigeons died from trichomoniasis. Diagnosis of the disease was based on postmortem examination, culture and identification of the parasite, Trichomonas gallinae, by PCR. Other viral, bacterial or fungal pathogens were ruled out as cause for the die-off. The gathering of the woodpigeons at game bird feeders set up for red-legged partridges may have contributed to the outbreak. Mortality ceased after treatment with dimetridazole via the game bird feeders. Supplementary feeding of game birds constitutes a risk factor for the appearance of disease outbreaks. Close monitoring of infectious diseases in these populations is important, but treatment of free-living birds should be avoided in favour of other measures, as it poses risks.     

Bird pollination in South African Salvia species

Approximately one-fourth of the more than 900 world-wide distributed Salvia species (Lamiaceae) is ornithophilous. With few exceptions they occur in the New World, being predominantly pollinated by hummingbirds. In the Old World only Salvia africana-lutea and the recently described Salvia thermarum, both from the Cape Province of South Africa, were observed to be pollinated by sunbirds and white-eyes. Among the 23 South African Salvia species Salvia lanceolata is a further candidate for being bird pollinated. For the first time we describe and illustrate its pollination by Nectarinia chalybea and Zosterops pallidus. We compare the ornithophilous syndrome of the three mentioned Salvia species and relate them to the morphological fitting of the most common nectarivorous birds of the Southwestern Cape (Cape peninsula to Worcester). We conclude that each of the birds could act as a pollinator and that the three co-occurring Salvia species are not mechanically isolated from each other. The degree of specialisation towards bird pollination, possible hybridisation events and evolution of bird pollination in South African Salvia species are discussed.     

Bacterial community in the crop of the hoatzin, a neotropical folivorous flying bird

The hoatzin is unique among known avian species because of the fermentative function of its enlarged crop. A small-bodied flying foregut fermenter is a paradox, and this bird provides an interesting model to examine how diet selection and the gut microbiota contribute to maximizing digestive efficiency. Therefore, we characterized the bacterial population in the crop of six adult hoatzins captured from the wild. A total of 1,235 16S rRNA gene sequences were grouped into 580 phylotypes (67% of the pooled species richness sampled, based on Good's coverage estimator, with C(ACE) and Chao1 estimates of 1,709 and 1,795 species-level [99% identity] operational taxonomic units, respectively). Members of 9 of the approximately 75 known phyla in Bacteria were identified in this gut habitat; the Firmicutes were dominant (67% of sequences, belonging to the classes Clostridia, Mollicutes, and Bacilli), followed by the Bacteroidetes (30%, mostly in the order Bacteroidales), Proteobacteria (1.8%), and Lentisphaerae, Verrucomicrobia, TM7, Spirochaetes, Actinobacteria, and Aminanaerobia (all <0.1%). The novelty in this ecosystem is great; 94% of the phylotypes were unclassified at the "species" level and thus likely include novel cellulolytic lineages.     

SEED DENSITY, COVER, PREDATION AND THE DISTRIBUTION OF BIRDS IN A BEECH WOOD IN SOUTHERN SWEDEN

The distribution of six species of birds within a beech wood was analysed in two winters when beech seeds were abundant. All species were concentrated in patches where seed density was high in one winter, but only two showed a similar distribution in the second winter. The distribution of the other four species, three tits Parus spp. and the Nuthatch Sitta europaea, was positively correlated with low cover. Cover was inversely correlated with seed density. Bird predators were recorded many times during the second winter but not at all during the first winter. It is suggested that predator avoidance was more important than food density for some species in the second winter. The relationships between bird density and both food and cover were sigmoid in shape. The proportion of the seed crop consumed by the birds was estimated at about 4.5%, which was probably more than the amount consumed by mammals. The Woodpigeon Columba palumbus (which took 44% of the total seeds consumed by birds) and the Brambling Fringilla montifringilla (33%) were the most important seed consumers among the birds.     

Multi‐locus sequence typing of Salmonella enterica serovar Typhimurium isolates from wild birds in northern England suggests host‐adapted strain

Aims: Recent studies have suggested that Salmonella Typhimurium strains associated with mortality in UK garden birds are significantly different from strains that cause disease in humans and livestock and that wild bird strains may be host adapted. However, without further genomic characterization of these strains, it is not possible to determine whether they are host adapted. The aim of this study was to characterize a representative sample of Salm. Typhimurium strains detected in wild garden birds using multi‐locus sequence typing (MLST) to investigate evolutionary relationships between them. Methods and Results: Multi‐locus sequence typing was performed on nine Salm. Typhimurium strains isolated from wild garden birds. Two sequence types were identified, the most common of which was ST568. Examination of the public Salmonella enterica MLST database revealed that only three other ST568 isolates had been cultured from a human in Scotland. Two further isolates of Salm. Typhimurium were determined to be ST19. Conclusions: Results of MLST analysis suggest that there is a predominant strain of Salm. Typhimurium circulating among garden bird populations in the United Kingdom, which is rarely detected in other species, supporting the hypothesis that this strain is host adapted. Significance and Impact of the Study: Host–pathogen evolution is often assumed to lead to pathogens becoming less virulent to avoid the death of their host; however, infection with ST568 led to high mortality rates among the wild birds examined, which were all found dead at wild bird‐feeding stations. We hypothesize that by attracting unnaturally high densities of birds, wild bird‐feeding stations may facilitate the transmission of ST568 between wild birds, therefore reducing the evolutionary cost of this pathogen killing its host, resulting in a host‐adapted strain with increased virulence.     

FECAL METHANOGENS AND VERTEBRATE EVOLUTION

It has been assumed that the feeding habits of vertebrates predispose the variety of intestinal differentiations and the composition of the microbial biota living in their intestinal tracts. Consequently, the presence of methanogenic bacteria in the various differentiations of the large intestine and the foregut of herbivorous vertebrates had been attributed primarily to the existence of anaerobic habitats and the availability of carbon dioxide and hydrogen originating from the fermentative microbial digestion of plant-based diets. However, Australian ratites, many murids, and several New World primates lack methanogens, despite their intestinal differentiations and their vegetarian feeding habits. Crocodiles, giant snakes, aardvarks, and ant-eaters on the other hand release significant amounts of methane. A determination of methane emissions by 253 vertebrate species confirmed that competence for intestinal methanogenic bacteria is shared by related species and higher taxa, irrespective of different feeding habits. In “methanogenic” branches of the evolutionary tree, a variety of differentiations of the large intestine evolved and, in some cases, differentiations of the foregut. In contrast, the lack of competence for methanogens in chiropterans/insectivores and carnivores apparently has precluded the evolution of specialized fermenting differentiations of the digestive tract. Our observations reveal that the presence of intestinal methanogenic bacteria is under phylogenetic rather than dietary control: competence for intestinal methanogenic bacteria is a plesiomorphic (primitive-shared) character among reptiles, birds, and mammals. This competence for methanogenic bacteria has been crucial for the evolution of the amniotes.     

Maize‐field complexity and farming system influence insectivorous birds’ contribution to arthropod herbivore regulation

The contribution of insectivorous birds to reducing crop damage through suppression of herbivory remains underappreciated, despite their role as cropland arthropod predators. We examined the roles of farming system, crop cover pattern, and structural configuration in influencing assemblage composition of insectivorous birds and their herbivorous arthropod prey across maize fields, and determined how bird exclusion affects crop herbivory levels. To achieve these objectives, we collected data across a sample of organic and conventional small‐scale non‐Bt maize farms in western Kenya. Assessments of abundance, diversity, and richness of insectivorous birds and abundance of their arthropod prey were compared between organic and conventional small‐scale non‐Bt maize on monocultured and inter‐cropped farms. We also employed bird exclusion experiments to assess impacts of bird predation on herbivorous arthropod abundance. Results showed that higher structural heterogeneity supported higher insectivorous bird richness, particularly under organic systems, dense trees, large woodlots, and thick hedgerows. Bird abundance further increased with crop diversity but not in relation to cropping method, hedgerow type, or percent maize cover per se. Conversely, herbivorous arthropod abundance and richness increased on conventional farms and those with higher percent maize cover, but were unaffected by cropping methods, tree, or hedgerow characteristics. Birds’ arthropod prey was more abundant under completely closed experimental plots compared with open or semi‐closed plots, confirming a significant linkage between birds and herbivorous arthropod suppression. In this study, we demonstrate importance of structural heterogeneity in agricultural landscapes, including diverse croplands and on‐farm trees to maximize insectivorous birds’ contribution to reducing crop arthropod herbivory. Abstract in Swahili is available with online material.     

Extreme rates and heterogeneity in insect DNA evolution

Summary DNA-DNA hybridization studies of insects, more specificallyDrosophila and cave crickets, have revealed interesting patterns of genome evolution that contrast markedly with what has been seen in other taxa, especially mammals and birds. Insect genomes are composed of sections of single-copy DNA with extreme variation in rates of evolutionary change. This variation is more extreme than between introns and exons; introns fall into the relatively conserved fraction of the genome. Attempts to calculate absolute rates of change inDrosophila DNA have all led to estimates some 5–10 times faster than those found in most vertebrates; this is true even for the more conservative part of the nuclear genome. Finally we point out that morphological similarity, chromosomal similarity, and/or ability to form interspecific hybrids is often associated with quite high levels of single-copy DNA divergence in insects as compared to mammals and birds.     

Bioenergetics and diet in a simple community of shrubsteppe birds

Summary Simulation model estimates of bioenergetics are coupled with observations of diet selection and arthropod prey abundances to assess (1) the role of bird populations in trophic energy fluxes in a temporally heterogeneous shrubsteppe ecosystem, and (2) the degree to which those populations may be limited by food.The model estimates a total annual energy demand of 2.91 kcal m^-2 yr^-1 by the entire passerine avifauna during 1974, with daily demands varying from 0.0025 to 0.0260 kcal m^-2. Coupling energy requirements with estimates of arthropod availability implies that bird demands on the insect standing crop never exceeded 0.7% per day of that standing crop during the breeding season or summer.Overall, the bioenergetic estimates imply that these birds are unlikely to be important in ecosystem processes and, reciprocally, are unlikely to be limited by food resources even during peak energy demands. As a consequence, I suggest that biological interactions such as competition play a relatively minor role in structuring the bird community in this variable environment.     

A Bird and Small Mammal BACI and IG Design Studies in a Wind Farm in Malpica (Spain)

Wind farms have shown a spectacular growth during the last 10 years. As far as we know, this study is the first where the relationship between wind power and birds and small mammals have been considered. Before–after control impact (BACI) study design to birds and Impact Gradient (IG) study design to small mammals to test the null hypothesis of no impact of a wind farm were used. In the BACI model Windfarm Area and a Reference Area were considered. Distance from turbines was considered in the IG model. Windfarm installations did not clearly affect bird and small mammal populations. Flight height of nesting and no nesting birds did not show a clear tendency. Small mammals populations suffered high variations in numbers through times by intrinsic population factors. There are many practical problems of detection of human influence on abundances of populations so sampling in the long run can be suggested.     

A phenology of the evolution of endothermy in birds and mammals

Recent palaeontological data and novel physiological hypotheses now allow a timescaled reconstruction of the evolution of endothermy in birds and mammals. A three‐phase iterative model describing how endothermy evolved from Permian ectothermic ancestors is presented. In Phase One I propose that the elevation of endothermy – increased metabolism and body temperature (T_b) – complemented large‐body‐size homeothermy during the Permian and Triassic in response to the fitness benefits of enhanced embryo development (parental care) and the activity demands of conquering dry land. I propose that Phase Two commenced in the Late Triassic and Jurassic and was marked by extreme body‐size miniaturization, the evolution of enhanced body insulation (fur and feathers), increased brain size, thermoregulatory control, and increased ecomorphological diversity. I suggest that Phase Three occurred during the Cretaceous and Cenozoic and involved endothermic pulses associated with the evolution of muscle‐powered flapping flight in birds, terrestrial cursoriality in mammals, and climate adaptation in response to Late Cenozoic cooling in both birds and mammals. Although the triphasic model argues for an iterative evolution of endothermy in pulses throughout the Mesozoic and Cenozoic, it is also argued that endothermy was potentially abandoned at any time that a bird or mammal did not rely upon its thermal benefits for parental care or breeding success. The abandonment would have taken the form of either hibernation or daily torpor as observed in extant endotherms. Thus torpor and hibernation are argued to be as ancient as the origins of endothermy itself, a plesiomorphic characteristic observed today in many small birds and mammals.     

Further evidence for the regulation of bacterial populations in soil by protozoa

After the addition to soil of large numbers of a cowpea Rhizobium strain, the population declined steadily until the numbers reached about 10⁷/g, and the protozoa rose to about 10⁴/g. When indigenous protozoa were suppressed by the addition of actidione to the soil, the density of the test rhizobium did not fall initially, but its abundance declined to about 10⁷/g when actidione-resistant protozoa arose in significant numbers. The addition to actidione-treated soil of an antibiotic-resistant strain of Paramecium led to a rapid decrease in the population of the rhizobium, the density reaching essentially the same value as in soil receiving neither the drug nor the paramecia. The same changes occurred with Xanthomonas campestris as test prey except that its numbers fell to about 10⁵/g of soil. These data provide further evidence for the key role of protozoa in controlling the abundance of populations of certain bacteria introduced into soil.