Abundance drives broad patterns of generalisation in plant–hummingbird pollination networks

Abundant pollinators are often more generalised than rare pollinators. This could be because abundant species have more chance encounters with potential interaction partners. On the other hand, generalised species could have a competitive advantage over specialists, leading to higher abundance. Determining the direction of the abundance–generalisation relationship is therefore a ‘chicken‐and‐egg’ dilemma. Here we determine the direction of the relationship between abundance and generalisation in plant–hummingbird pollination networks across the Americas. We find evidence that hummingbird pollinators are generalised because they are abundant, and little evidence that hummingbirds are abundant because they are generalised. Additionally, most patterns of species‐level abundance and generalisation were well explained by a null model that assumed interaction neutrality (interaction probabilities defined by species relative abundances). These results suggest that neutral processes play a key role in driving broad patterns of generalisation in animal pollinators across large spatial scales.     

Spatial Distribution and Temporal Variance of Fish Communities in the Channelized and Regulated Vltava River (Central Europe)

Spatial distribution and temporal variations of fish communities in a channelized portion of the Vltava River (Central Europe) were investigated from May to October 1992. Fish abundance and species number were collected monthly during diel samples in the main channel and a large oxbow. To determine differences in fish communities we chose the low-flow period when maximal differences in physical environment between habitats are expected. Fish community patterns from the main channel and oxbow differed only in abundance of ecological groups; the main channel had higher abundance of rheophilic species, whereas eurytopic species were more abundant in the oxbow. However, our analysis revealed significant differences in temporal variations between habitats. Fish abundance usually varied unpredictably over day-night periods in the main channel, whereas in the oxbow we observed a pronounced peak in fish abundance from morning to mid-afternoon. Diel changes in fish abundance in the oxbow corresponded to occurrence of low dissolved oxygen during afternoon and night-time periods. The effect of oxygen depletion induced by strong organic pollution limited the oxbow suitability for fishes. Similar habitats are usually occupied by limnophilic and phytophilic species that were absent in our samples. Our results suggested that man-induced high variability of physical environment decreased variability in fish community.     

Differences in composition of small,motile invertebrate assemblages from seagrass and unvegetated habitats in a southern Australian estuary

Assemblages of small, motile invertebrates (epifauna) from eelgrass(Zostera muelleri) and unvegetated habitats in a shallow, marine-dominatedestuary were compared at five sampling periods over one year. Assemblagesbased on abundance and biomass of 21 taxa from the two habitats groupedseparately in multivariate analyses (MDS ordination), and these groupingswere shown to be significant using an analysis of similarities (ANOSIM)randomisation routine. Secondarily to habitat differences, weak influencesof water temperature and distance to open water, but not of salinity, weredetected at some periods. Abundance and biomass of key taxa and all speciescombined were higha in eelgrass than in unvegetated habitat. Cumaceans wereexceptional in being collected predominantly from unvegetated habitat. Totalepifaunal production and crustacean production estimated using twovariables, (1) the biomass of individuals of each size class, and (2) watertemperature, were also higher in eelgrass than in unvegetated habitat. Thehigher abundance in eelgrass of taxa such as amphipods, harpacticoidcopepods and polychaetes that are major components of the diets of smallfish is consistent with a model explaining higher fish numbers in eelgrassin terms of prey availability.     

Water level fluctuations and dynamics of amphibious plants at Lake Constance: Long-term study and simulation

Inundations of lakeshores are classical examples of how disturbance can influence community diversity and composition. As the occurrence and intensity of flooding are predicted to change dramatically as a result of climate change, predicting the consequences of such changes has become a major task for community ecology. Here we present abundance data of five species that comprise a species-poor community of high conservation value at lakeshores of Lake Constance over 17 years, during which one of the longest flood periods and the lowest water levels since 1890 occurred. We used simple regression models and increasingly sophisticated Markov chain models plus non-linear parameter estimation to put down abundance changes to direct effects of flooding on population-dynamic parameters and to indirect effects of flooding through modification of interspecific competition. We found a negative effect of flood duration on abundance changes for the non-specialist species Agrostis stolonifera and Phalaris arundinacea, but no effect on Carex acuta. The specialist species, Ranunculus reptans but not Littorella uniflora showed a positive effect of flooding. Data analysis revealed an unambiguous competitive hierarchy with the two graminoid species (C. acuta, P. arundinacea) being superior, and the habitat specialists being most sensitive to interspecific competition. We used estimated parameters to project the community dynamics under different flooding regimes. Long-term projection showed that the original community is threatened by two non-specialist species (C. acuta and P. arundinacea). Even if this forecast was influenced by various model limitations, it may indicate irreversible changes in soil fertility during the phase of high eutrophication between 1950 and 1980. Our study demonstrated that long-term abundance relevés combined with Markov modelling and predictive simulations are an important counterpart to detailed short-term studies. The combination of empirical and theoretical methods elucidates the interaction of biotic and abiotic factors in community change.     

Do competing honey bees matter? Dynamics and abundance of native bees before and after honey bee invasion

To provide replicate samples of local bee populations in a nature preserve, light traps operated continuously on Barro Colorado Island (BCI), Panama, collected bees for 17 years, including 10 years following invasion by African Apis mellifera. Honey bees appeared in light traps as the first swarms colonized the Panama Canal area. Their numbers followed seasonal trends shown in inde-pendent studies, thus indicating bee abundance and activity in a large area. No measurable population-level impact of competition between this invading honey bee and native bees, despite many demonstrations of resource competition at flower patch and colony levels, changed annual abundances of all 15 native bee species. Native bee abundance did not decrease, nor did native bees show substantial reciprocal yearly change with honey bee abundance. One strong negative correlation of bee catches with an extremely rainy year was found. However, multiple regression using rainfall and honey bee abundance as the independent variables showed that neither was responsible for bee population change over 17 years. Nearly half the native species declined during a year that displayed peak honey bee number. That competition from honey bees on an island the size of BCI was necessarily reduced below impact levels expected on the mainland is discussed using a model of resource and consumer density, foraging range, and island size.     

Effects of Seasonality and Dispersal on the Ciliate Community Inhabiting Bromeliad Phytotelmata in Riparian Vegetation of a Large Tropical River

This study evaluated the influence of rainfall amount on the abundance, species richness, and species occurrence and abundance distribution of the ciliate community associated with the bromeliad Aechmea distichantha. The plants were collected from a rock wall of about 10‐km long at the left bank of Paraná River. We assessed the effects of both spatial and temporal variables on the community attributes, as well as whether plants geographically closer have a similar abundance distribution and species composition. The ciliate community was substantially distinct between both hydrological periods, with greater values of species richness and abundance in the rainy period. No spatial structuring (differences in the species occurrence and abundance distribution among strata) or geographical similarity (similarity in ciliate species composition among the plants) was found. Multiple regression analysis showed a positive relationship only between the ciliate abundances and water volumes for both periods. Although few of the formulated predictions were confirmed, our study provides valuable information on the ecological aspects of the ciliate community inhabiting bromeliad phytotelmata.     

Intra-generic competition among Nothofagus in New Zealand's primary indigenous forests

Competitive interactions between New Zealand's four Nothofagus or southern beech species were analysed using an extensive dataset describing the composition of natural forests, supplemented by environmental estimates describing both climate and landform. Using multiple regression models of progressively increasing complexity, the analysis first accounted for variation in tree abundance attributable to both environment and regional-scale distributional disjunctions of likely historic origin. Intra-generic competition, expressed as variation in tree abundance dependent on the presence or absence of each congener, was then assessed by adding (1) simple terms to assess the magnitude of gross changes in abundance, and (2) interaction terms to assess variation in abundance along the dominant temperature gradient given different competitive contexts. Results indicate the presence of substantial intra-generic interactions, with simple interaction terms giving marginal increases in explained deviance equal to that explained by initial regressions using environment alone. Addition of interaction terms brought about smaller improvements in model fit, but confirm that variation in abundance along the dominant annual temperature gradient is strongly influenced by the competitive context provided by the remaining congeners. Such results are consistent with current understanding of the niche concept, and underline the difficulty inherent in using current species limits to predict likely changes in species distributions consequent on global warming.     

Kenyan coral reef lagoon fish: effects of fishing,substrate complexity,and sea urchins

Population density, number of species, diversity, and species-area relationships of fish species in eight common coral reef-associated families were studied in three marine parks receiving total protection from fishing, four sites with unregulated fishing, and one reef which recently received protection from fishing (referred to as a transition reef). Data on coral cover, reef topographic complexity, and sea urchin abundance were collected and correlated with fish abundance and species richness. The most striking result of this survey is a consistent and large reduction in the population density and species richness of 5 families (surgeonfish, triggerfish, butterflyfish, angelfish, and parrotfish). Poor recovery of parrotfish in the transition reef, relative to other fish families, is interpreted as evidence for competitive exclusion of parrotfish by sea urchins. Reef substrate complexity is significantly associated with fish abundance and diversity, but data suggest different responses for protected versus fished reefs, protected reefs having higher species richness and numbers of individuals than unprotected reefs for the same reef complexity. Sea urchin abundance is negatively associated with numbers of fish and fish species but the interrelationship between sea urchins, substrate complexity, coral cover, and management make it difficult to attribute a set percent of variance to each factor-although fishing versus no fishing appears to be the strongest variable in predicting numbers of individuals and species of fish, and their community similarity. Localized species extirpation is evident for many species on fished reefs (for the sampled area of 1.0 ha). Fifty-two of 110 species found on protected reefs were not found on unprotected reefs.     

Interdecadal change in the deep Puget Sound benthos

Data from quantitative samples of the benthos at a 200-m site in central Puget Sound, collected twice yearly in most years between 1963 and 1992, were evaluated to determine the extent to which species composition in a continental-shelf depth community exhibits long-term persistence. Study results showed that the most abundant species were consistently present over the 30-year period. However, measures of species composition (e.g., similarity, diversity) reveal a subtle, gradual change in the community over time. Among the changes are (1) multi-year periods of greatly increased abundance of the common species; (2) an overall increase in the total abundance of the benthic community beginning in the mid-1970s; (3) periods of increased abundance, during the late 1970s and early 1980s, of two species that are tolerant of organic enrichment; and (4) the steady decline in abundance of the large burrowing echinoderm, Brisaster latifrons as a consequence of the lack of recruitment to the site since 1970. Despite the conspicuousness of these changes, there are no observed environmental factors that readily explain them. Circumstantial evidence suggests that climate-related change in Puget Sound circulation beginning in the mid-1970s, organic enrichment associated with a nearby large source of primary-treated sewage, and the influence of changes in the abundance of the large echinoderms on the smaller species are potential agents of change. The principle reasons for our inability to identify causes of long-term change in the Puget Sound benthos are (a) inconsistent long-term monitoring of environmental variables, (b) the lack of quantitative information about long-term changes in plankton and fish populations, (c) lack of knowledge of specific predator/prey and competitive interactions in soft bottom benthos, (d) unknown influence of moderate levels of contamination on biota; and (e) lack of understanding of possible linkages between climate regime shifts and fluctuations in local biological populations.     

Seasonal abundance during the summer months of some cattle-visiting Muscidae (Diptera) in northeast England

Abstract. 1. Regular samples of flies swarming around cattle in Northumberland, England, were collected from late May to early October 1980–82, during weather judged to be suitable for fly activity.
2. Results were grouped into weekly periods and averaged to reduce variation caused by the weather.
3. For all species of Muscidae that were caught in reasonable numbers, the changes in abundance through the season are described.
4. The proportion of each species in the total sample is discussed; biting species were not sampled as efficiently as were non-biting species. Hydrotaea trritans and Morellia simplex were the most numerous species forming 49% and 32% of the catch respectively.
5. The total numbers of flies were low at the beginning of the sampling period, rose to a maximum in mid-July, stayed high until mid-September and then declined by October.     

Aerial survey of waterbirds on wetlands as a measure of river and floodplain health

1. This study highlights the use of waterbird communities as potential measures of river and floodplain health at a landscape scale. 2. The abundance and diversity of a waterbird community (54 species) was measured over 15 trips with four aerial and three ground counts per trip on a 300-ha lake in arid Australia. 3. Aerial survey estimates of individual species were significantly less precise (SE/mean) than ground counts across two (11–100 and > 1000) out of four abundance classes of waterbirds: 0–10, 11–100, 101–1000 and > 1000. Standard error/mean as a percentage decreased with increasing abundance from about 60% for the lowest abundance class to 18% for the largest abundance class. 4. Aerial survey estimates were negatively biased for species in numbers of less than 10 and greater than 5000 but unbiased compared to ground counts for other abundance classes. Aerial surveys underestimated numbers of waterbirds by 50% when there were 40 000 waterbirds. Three ground counts found about seven more waterbird species than four aerial surveys. One ground count took about 150 times longer than two aerial surveys and cost 14 times more. 5. Regression models were derived, comparing aerial survey estimates to ground counts for 31 of 36 species for which there were sufficient data. Aerial survey estimates were unbiased for most of these species (67%), negatively biased for six species and positively biased for one species. Estimates were negatively biased in species that occurred in small numbers or that dived in response to the aircraft. 6. River system health encompasses the state of floodplain wetlands. Waterbirds on an entire wetland or floodplain may be estimated by aerial survey of waterbirds; this is a coarse but effective measure of waterbird abundance. Aerial survey is considerably less costly than ground survey and potentially provides a method for measuring river and floodplain health over long periods of time at the same scale as river management.     

Host immunization shapes interspecific associations in trematode parasites

1. Individuals of free-living organisms are commonly infected by multiple parasite species. Under such circumstances, positive or negative associations between the species are possible because of direct or indirect interactions, details in parasite transmission ecology and host-mediated factors. One possible mechanism underlying these processes is host immunity, but its role in shaping these associations has rarely been tackled experimentally.
2. In this study, we tested the effect of host immunization on associations between trematode parasites infecting eyes of fish. We first analysed the associations between three species ( Diplostomum spathaceum , Diplostomum gasterostei and Tylodelphys clavata ) in wild hosts, roach ( Rutilus rutilus ) and perch ( Perca fluviatilis ). Second, using rainbow trout ( Oncorhynchus mykiss ) as a model fish species, we experimentally investigated how sequential immunization of the host (i.e. one parasite species infects and immunizes the host first) could affect the associations between two of the species.
3. The results indicated that most of the associations were positive in wild hosts, which supports between-individual variation in host susceptibility, rather than competitive exclusion between the parasite species. However, positive associations were more common in roach than in perch, possibly reflecting differences in ecological conditions of exposure between the host species. The experimental data showed that positive associations between two of the species were eroded by host immunization against one of the parasite species.
4. We conclude that sequential immunization of hosts has a marked effect on interspecific parasite associations and basically can determine if positive associations are detected or not. This implies that correlative results suggesting non-interactive community structure in general may be obscured by the sequence of previous parasite exposure and corresponding dynamics of host immunization.     

Functional traits associated with plant colonizing and competitive ability influence species abundance during secondary succession: Evidence from subalpine meadows of the Qinghai–Tibetan Plateau

It is widely recognized that colonists and competitors dominate early and late succession, respectively, with selected species having different colonizing and competitive abilities. However, it remains unknown whether colonizing and competitive ability can determine species abundance directly over succession. The data for five key functional traits were collected (photosynthesis rate, leaf turgor loss point, leaf proline content, seed mass, and seed germination rate), which are direct indicators of plant competitive and colonizing abilities including growth, drought and cold stress resistance, dispersal, and seed dormancy. Here, we tested the effects of colonizing and competitive abilities on species abundance, by employing a linear mixed‐effects model to examine the shifts in the relationship between species abundance and these five colonization and competition‐related traits in species‐rich subalpine secondary successional meadows (at 4, 6, 10, 13 years of age, and undisturbed, respectively) of the Qinghai–Tibetan Plateau. The abundant species at the early‐successional meadows tend to have high photosynthetic rate, high leaf proline content, low seed mass, and seed germination rate for having high colonizing ability, but low competitive ability. By contrast, late‐successional communities tend to be dominated by species with high competitive ability, but low colonizing ability, indicated by large seeds, high seed germination rate, low photosynthetic rate, and leaf proline content. The observed directional shifts in the relationships between traits (photosynthetic rate, leaf proline content, seed mass, and seed germination rate) and abundance with successional age, bring two new understandings of community assembly during succession of subalpine meadows in the Qinghai–Tibetan Plateau. First, it discloses that the differences in species abundance over succession can be directly attributed to differences in colonizing and competitive abilities of different species. Second, it expands the effects of multiple life historical differences including growth, resource competitive ability, cold stress resistance, dispersal, and seed germination strategy, represented by functional traits on community assembly along succession, that is, from the species to the community level.     

Establishment Probability in Fluctuating Environments: A Branching Process Model

We study the establishment probability of invaders in stochastically fluctuating environments and the related issue of extinction probability of small populations in such environments, by means of an inhomogeneous branching process model. In the model it is assumed that individuals reproduce asexually during discrete reproduction periods. Within each period, individuals have (independent) Poisson distributed numbers of offspring. The expected numbers of offspring per individual are independently identically distributed over the periods. It is shown that the establishment probability of an invader varies over the reproduction periods according to a stable distribution. We give a method for simulating the establishment probabilities and approximations for the expected establishment probability. Furthermore, we show that, due to the stochasticity of the establishment success over different periods, the expected success of sequential invasions is larger then that of simultaneous invasions and we study the effects of environmental fluctuations on the extinction probability of small populations and metapopulations. The results can easily be generalized to other offspring distributions than the Poisson.     

Hierarchical models facilitate spatial analysis of large data sets: a case study on invasive plant species in the northeastern United States

Many critical ecological issues require the analysis of large spatial point data sets – for example, modelling species distributions, abundance and spread from survey data. But modelling spatial relationships, especially in large point data sets, presents major computational challenges. We use a novel Bayesian hierarchical statistical approach, 'spatial predictive process' modelling, to predict the distribution of a major invasive plant species, Celastrus orbiculatus , in the northeastern USA. The model runs orders of magnitude faster than traditional geostatistical models on a large data set of c . 4000 points, and performs better than generalized linear models, generalized additive models and geographically weighted regression in cross-validation. We also use this approach to model simultaneously the distributions of a set of four major invasive species in a spatially explicit multivariate model. This multispecies analysis demonstrates that some pairs of species exhibit negative residual spatial covariation, suggesting potential competitive interaction or divergent responses to unmeasured factors.     

Environmental determinants correlated to Vibrio harveyi-mediated death of marine gastropods

Vibrio harveyi is an emerging pathogen that causes mass mortality in a wide variety of marine animal species; however, it is still unclear which environmental determinants correlate V. harveyi dynamics and the bacterium-mediated death of marine animal life. We conducted a correlation analysis over a 5-year period (2003–2007) analysing the following data: V. harveyi abundance, marine animal mortality and environmental variables (seawater temperature, salinity, pH, chlorophyll a , rainfall and total viable bacterial counts). The samples were collected from a coastal area in northern Japan, where deaths of a marine gastropod species ( Haliotis discus hannai ) have been reported. Our analysis revealed significant positive correlations between average seawater temperature and average V. harveyi abundance ( R  = 0.955; P  < 0.05), and between average seawater temperature and V. harveyi -mediated abalone death ( R  = 0.931; P  < 0.05). Based on the regression model, n °C rise in seawater temperature gave rise to a 21 ⁿ -fold increase in the risk of mortality caused by V. harveyi infection. This is the first report providing evidence of the strong positive correlation between seawater temperature and V. harveyi -mediated death of marine species.     

Acoustic estimation of wildlife abundance: methodology for vocal mammals in forested habitats

Habitat loss and hunting pressure threaten mammal populations worldwide, generating critical time constraints on trend assessment. This study introduces a new survey method that samples continuously and non‐invasively over long time periods, obtaining estimates of abundance from vocalization rates. We present feasibility assessment methods for acoustic surveys and develop equations for estimating population size. As an illustration, we demonstrate the feasibility of acoustic surveys for African forest elephants (Loxodonta africana cyclotis). Visual surveys and vocalizations from a forest clearing in the Central African Republic were used to establish that low‐frequency elephant calling rate is a useful index of elephant numbers (linear regression P < 0.001, r_adj.² = 0.58). The effective sampling area was 3.22 km² per acoustic sensor, a dramatic increase in coverage over dung survey transects. These results support the use of acoustic surveys for estimating elephant abundance over large remote areas and in diverse habitats, using a distributed network of acoustic sensors. The abundance estimation methods presented can be applied in surveys of any species for which an acoustic abundance index and detection function have been established. This acoustic survey technique provides an opportunity to improve management and conservation of many acoustically‐active taxa whose populations are currently under‐monitored.     

Characterization of moorland vegetation and the prediction of bird abundance using remote sensing

Aims To characterize and identify upland vegetation composition and height from a satellite image, and assess whether the resulting vegetation maps are accurate enough for predictions of bird abundance. Location South‐east Scotland, UK. Methods Fine‐taxa vegetation data collected using point samples were used for a supervised classification of a Landsat 7 image, while linear regression was used to model vegetation height over the same image. Generalized linear models describing bird abundance were developed using field‐collected bird and vegetation data. The satellite‐derived vegetation data were substituted into these models and efficacy was examined. Results The accuracy of the classification was tested over both the training and a set of test plots, and showed that more common vegetation types could be predicted accurately. Attempts to estimate the heights of both dwarf shrub and graminoid vegetation from satellite data produced significant, but weak, correlations between observed and predicted height. When these outputs were used in bird abundance–habitat models, bird abundance predicted using satellite‐derived vegetation data was very similar to that obtained when the field‐collected data were used for one bird species, but poor estimates of vegetation height produced from the satellite data resulted in a poor abundance prediction for another. Conclusions This pilot study suggests that it is possible to identify moorland vegetation to a fine‐taxa level using point samples, and that it may be possible to derive information on vegetation height, although more appropriate field‐collected data are needed to examine this further. While remote sensing may have limitations compared with relatively fine‐scale fieldwork, when used at relatively large scales and in conjunction with robust bird abundance–habitat association models, it may facilitate the mapping of moorland bird abundance across large areas.     

Fish Communities of the Lower Fraser River (Canada) and a 21-year Contrast

Fish communities were sampled at 14 sites along the lower 120km of the Fraser River, British Columbia by beach seine four times in 1972–1973 and three times in 1993–1994. Of the 37 species collected, peamouth chub, largescale sucker, starry flounder, and northern squawfish were predominant in either density or biomass. Densities and biomass of most species and all fish combined were higher in 1993–1994. Strong rank correlations of species abundance or biomass indicated that the overall fish community structure was very similar in both periods. At smaller spatial scales (reaches of 2–3 sites) and shorter time scales (by season), less than half the comparisons showed any significant correlation indicating changes in community composition. Largescale sucker, one of the largest contributors to biomass in both periods, showed decreased abundance, i.e., lower density, lower biomass, and large differences in the size-frequency distribution, specifically very low representation of small size classes. Other species, especially small-bodied forms, generally increased in numbers. Despite large changes in the lower Fraser River ecosystem in the past 21 years, the overall fish community has shown remarkably little change over that interval.     

Long-term changes in abundance of bats as revealed by their frequency in tawny owls’ diet

Percentage of bats in tawny owls’ diet was compared in three periods: I — before 1976, II — 1976–1992, III — 1993–2009, by using the published and unpublished material from Poland (only samples over 100 vertebrate prey items). This species of owl showed an opportunistic predation on bats and took them more frequently in periods of higher abundance. Before the mass use of toxic pesticides in Poland, in the period I bats constituted more than 2% of vertebrates in four out of five diet samples (median 2.4%). The lowest bat abundance occurred in Poland in the 1980s and resulted in the lowest percentage of bats taken by owls in the period II (n = 11, median 0.2%). Due to the recovery of bat populations in the period III, the percentage of bats in tawny owls’ diet increased (n = 23, median 0.7%). In large samples (over 200 vertebrate items, n = 21) collected in central and north-eastern Poland the percentage of bats increased from 1980 to 2009 (the estimated average value at the end of that period slightly exceeded 1%). Samples collected at the same five sites in 1975–1992 and again in 2000–2009, confirmed the increasing trend in percentage of bats captured by tawny owls noted in last years.