Genetic distinctness of three widespread and morphologically variable species of Drupella (Gastropoda,Muricidae)

Corallivorous gastropods of the genus Drupella have caused considerable damage to corals at widely separated reefs in the Indo-Pacific. Morphological variability of Drupella species within and between areas has caused taxonomic confusion. To clarify the relationships, we examined allozyme variation at 16 gene loci in samples from Western Australia, Queensland and Japan. Within sites, the species D. cornus, D. rugosa and D. fragum were distinguishable individually by each of 9 to 11 loci, with average genetic identities of about 0.25. The differences extended across sites, whereas the conspecific genetic identities over distances up to 6000 km were 0.86 to 1.00, supporting the view that there are three widespread species of Drupella. Nevertheless, there is much variation within species for allozymes, size, shape and colour.     

Multiple lines of evidence for an Australasian geographic boundary in the Indo-Pacific humpback dolphin (<Emphasis Type="Italic">Sousa chinensis</Emphasis>): population or species divergence?

The taxonomic status of humpback dolphins (genus Sousa, sub-family Delphininae) is unresolved. While the classification of this genus ranges from a single to three nominal species, the International Union for Conservation of Nature and the International Whaling Commission only recognise a ‘two-species’ taxonomy (S. teuszii in west Africa, and S. chinensis in the Indo-Pacific). Under the IUCN (2008), S. chinensis is listed as ‘near threatened’, but is only considered as a ‘migratory’ species in Australia. Taxonomic resolution of the genus Sousa is needed to define particular conservation status and develop appropriate management actions. Using phylogenetic analyses of 1,082 bp of mitochondrial and 1,916 bp of nuclear DNA, we provide multiple lines of genetic evidence for the genetic distinction of S. chinensis in China and Indonesia from S. chinensis in Australia. The separation of Australian Sousa from Sousa of Southeast Asia requires a review of their current conservation status and respective management actions.     

Predation on reef-building corals: multiscale variation in the density of three corallivorous gastropods, Drupella spp.

 Feeding aggregations of three corallivorous gastropods, Drupella cornus, D. fragum and D. rugosa, have caused considerable coral damage on reefs across the Indo-West Pacific. Distribution and abundance of these three species were explored at Lizard Island, Great Barrier Reef, to determine within-reef variations in density, and spatial relationships between Drupella and their prey corals. The scales of greatest variation were between reef habitats (combinations of exposure and depth) and individual coral colonies. Density varied 12-fold among four habitats: exposed crests (2.55/m²), exposed slopes (0.22/m²), sheltered crests (0.34/m²) and sheltered slopes (2.07/m²). Species composition also varied markedly between habitats. Individuals were highly aggregated, usually forming small clusters (<10 individuals) on live coral colonies and other substrata, and occasional large aggregations of=200 to>2000. Five basic tenets for sampling Drupella are established, based on patterns of variation in density and species composition, and small-scale habitat use. Accepted: 8 February 1999     

Species of <Emphasis Type="Italic">Neohaliotrema</Emphasis> Yamaguti, 1965 (Monogenea: Ancyrocephalidae) from the pomacentrid <Emphasis Type="Italic">Abudefduf vaigensis</Emphasis> (Quoy &; Gaimard) off Pulau Langkawi,Malaysia, with a revised diagnosis of the genus and a key to its species

Four new and one unidentified species of Neohaliotrema Yamaguti, 1965 were obtained from the gills of the Indo-Pacific sergeant Abudefduf vaigensis (Quoy & Gaimard) off Pulau Langkawi, Malaysia. The five species, N. malayense n. sp., N. bombini n. sp., N. andamanense n. sp., N. parvum n. sp. and an unidentified Neohaliotrema sp. (similar to N. macracanthum Zhukov, 1976), are described and distinguished based mainly on features of the haptor. Species of this genus are divisible into two groups, the ‘maomao group’, with two pairs of morphometrically modified ‘marginal’ hooks and a fenestrated haptor, and the ‘gracile group’, with morphologically similar marginal hooks and an entire haptor. With the exception of N. bombini n. sp., the species described fit within the ‘maomao group’. It is suggested that the more complex Neohaliotrema species of the ‘maomao group’ have modified hooks 1 and 2 on a haptoral ‘isthmus’ between two large apertures, i.e. ‘windows’, whereas the less complex species lacking these features are those of the ‘gracile group’. Neohaliotrema spp. have only a single pair of pigmented eye-spots. A fenestrated haptor is unique to the Neohaliotrema spp. of the ‘maomao group’. The generic diagnosis of Neohaliotrema is amended to include new data and a key to its known species is presented.     

Strict paternal inheritance of chloroplast DNA and maternal inheritance of mitochondrial DNA in intraspecific crosses of kiwifruit

 Previous studies have established that chloroplasts are inherited paternally in Actinidia interspecific crosses. However, fertilisation problems in interspecific crosses may affect the transmission of organelles. Six female clones, i.e. ‘Abbott’, ‘Bruno’, ‘Greensill’, ‘Hayward’, ‘Jones’, ‘Monty’, and four male clones were used to identify cpDNA polymorphisms within the cultivated kiwifruit species A. deliciosa. The restriction patterns by HpaII of a chloroplast fragment amplified by PCR with a pair of universal primers revealed a polymorphism at the intraspecific level. The inheritance of cpDNA in 143 seedlings from three intraspecific crosses in kiwifruit (Actinidia deliciosa) was studied. All offspring displayed the restriction pattern of the paternal parent, indicating that maternal inheritance of cpDNA in kiwifruit is rare at best. Strict maternal inheritance of mtDNA was confirmed in the same crosses used to investigate cpDNA transmission. Studies of cytoplasmic inheritance in the Actinidia genus represent to date the best documented report of differential organelle inheritance of cpDNA and mtDNA in angiosperms. Received: 10 November 1998 / Accepted: 14 December 1998     

Disappearance of <Emphasis Type="Italic">Acropora</Emphasis> from the Marquesas (French Polynesia) during the last deglacial period

The major reef-building coral genus Acropora has never been recorded, living or fossil, from the Marquesas Islands in the central Pacific Ocean, which are characterized by limited modern reef formations. During the “Musorstom 9” cruise in 1997, investigations of marine platforms representing drowned reef systems revealed for the first time the presence of two Acropora species as fossils at seven Marquesas islands. The predominant species was Acropora valida, which was widespread in the archipelago and dated between 7.4 and 48.6 ka, providing evidence of an earlier Pacific distribution pattern broader than previously observed. It is proposed that disappearance of Acropora after 7.4 ka was linked to climatic events probably ENSO events controlling the distribution of corals and coral reefs in the eastern Pacific without excluding alternatively the effects of an increase in sea-level rise.     

A modern-type Kimmeridgian reef (Ota Limestone,Portugal): Implications for Jurassic reef models

Upper Jurassic reefs rich in microbial crusts generally appear in deeper (sponge—‘algal’ crust reefs) or in very shallow but protected settings (coral or coral-coralline sponge meadows with ‘algal’ crusts). Upper Jurassic high-energy reefs (coral reefs and coral-stromatoporoid reefs) normally lack major participation of microbial crusts but rather represent huge bioclastic piles with only minor framestone patches preserved. An exception to this rule is represented by the high-energy, coral-‘algal’ Ota Reef from the Kimmeridgian of the Lusitanian Basin (Portugal). The narrow Ota Reef tract rims a small intra-basinal carbonate platform exhibiting perfect facies zonation (from W to E: Reef tract, back reef sands, peritidal belt, low-energy shallow lagoon). The reef is dominated by massive corals (Thamnasteria, Microsolena, Stylina). Complete preservation of coral framework is rare: like other Upper Jurassic high-energy reefs, the Ota Reef is very rich in debris; however, this debris is largely stabilized by algal and microbial crusts, what contrasts the other examples and gives the Ota Reef the appearance of a typical modern high-energy coral-melobesioid algal reef. Further similarities to modern reefs are the likely existence of a spur-and-groove system, the perfect sheltering of inner platform areas and the occurrence of small islands, as indicated by local blackenings and early vadose and karstic features.     

Upper Permian (Murghabian) rugose corals from Oman (Ba’id area,Saih Hatat): Community structure and contributions to reefbuilding processes

Summary Coral-dominated communties are rare in Upper Permian reefs. The study of Murghabian rugose and tabulate corals from allochtonous carbonates (‘Oman exotics’) of the Hawasina Complex and autochthonous carbonates of the Saih Hatat area/Arabian Platform (Oman) provides evidence for a significant contribution of rugose corals to the formation of Late Permian reefs. The corals are described with respect to taxonomy, microfacies and community structure. 8 genera and 7 species were recognized.Monothecalis minor n.sp.,Praewentzelella regulare n.sp. andWentzelella katoi magna n.ssp. are new. The corals represent three communities: (1)Praewentzelella community (Hawasina Complex), (2) cerioid coral community (Hawasina Complex), and (3)Waagenophyllum community (Hawasina Complex and Saih hatat). The corals from the Hawasina Complex and the Saih Hatat flourished in significantly different environments: Rugosa from the Hawasina Complex are representatives of reefs, whereas their counterparts from the Saih Hatat lived in level-bottom communities. Coral-bearing reefal boundstones are characterized by a diverse assemblage of sphinctozoans, inozoans, chaetetids, bryozoans, crinoids,Tubiphytes, Archaeolithoporella and algae. These communities produced bafflestones or framestones and were part of a sponge reef complex. The level-bottom community of the Saih Hatat is low-diverse only comprising rugose and tabulate corals. These of isolated colonies locally acted as bafflers.     

Phase shifts and the stability of macroalgal communities on Caribbean coral reefs

Caribbean coral reefs are widely thought to exhibit two alternate stable states with one being dominated by coral and the other by macroalgae. However, the observation of linear empirical relationships among grazing, algal cover and coral recruitment has led the existence of alternate stable states to be questioned; are reefs simply exhibiting a continuous phase shift in response to grazing or are the alternate states robust to certain changes in grazing? Here, a model of a Caribbean forereef is used to reconcile the existence of two stable community states with common empirical observations. Coral-depauperate and coral-dominated reef states are predicted to be stable on equilibrial time scales of decades to centuries and their emergence depends on the presence or absence of a bottleneck in coral recruitment, which is determined by threshold levels of grazing intensity and other process variables. Under certain physical and biological conditions, corals can be persistently depleted even while increases in grazing reduce macroalgal cover and enhance coral recruitment; only once levels of recruitment becomes sufficient to overwhelm the population bottleneck will the coral-dominated state begin to emerge. Therefore, modest increases in grazing will not necessarily allow coral populations to recover, whereas large increases, such as those associated with recovery of the urchin Diadema antillarum, are likely to exceed threshold levels of grazing intensity and set a trajectory of coral recovery. The postulated existence of alternate stable states is consistent with field observations of linear relationships between grazing, algal cover and coral recruitment when coral cover is low and algal exclusion when coral cover is high. The term ‘macroalgal dominated’ is potentially misleading because the coral-depauperate state can be associated with various levels of macroalgal cover. The term ‘coral depauperate’ is preferable to ‘macroalgal dominated’ when describing alternate states of Caribbean reefs.     

Reproduction and the unusual condition of hermaphroditism in Sarcophyton glaucum (Octocorallia,Alcyoniidae) in KwaZulu-Natal,South Africa

The genus Sarcophyton is an abundant soft coral on the marginal, high-latitude reefs in KwaZulu-Natal. A 2-year study on reproduction in the most common species,S. glaucum, revealed that gametogenesis in male and female colonies takes 9–10 and 16–18 mo, respectively, in this gonochoric, seasonal, broadcast spawner. Gametogenesis and spawning are synchronised in and between colonies, and with other common soft corals on the reefs. Spawning occurs annually in March between full and new moon with the release of spermsacs and the mature oocytes, the smaller oocytes being retained for further development. Thus far, the reproductive attributes of S. glaucum are comparable with other studies on the genus. However, the KwaZulu-Natal population of S. glaucum manifested the unusual attribute of hermaphroditism in 9% of the colonies, these having Stage I and II spermaries and predominantly Stage III and IV oocytes in their polyps. Small numbers of Stage I and II oocytes indicated that such colonies may be simultaneous hermaphrodites but this could not be confirmed. The complex reproductive strategy and associated measure of hermaphroditism in S. glaucum on KwaZulu-Natal reefs are discussed in terms of the species’ recruitment success in this marginal, high-latitude environment.     

Evolutionary history of the butterflyfishes (f: Chaetodontidae) and the rise of coral feeding fishes

Of the 5000 fish species on coral reefs, corals dominate the diet of just 41 species. Most (61%) belong to a single family, the butterflyfishes (Chaetodontidae). We examine the evolutionary origins of chaetodontid corallivory using a new molecular phylogeny incorporating all 11 genera. A 1759‐bp sequence of nuclear (S7I1 and ETS2) and mitochondrial (cytochrome b) data yielded a fully resolved tree with strong support for all major nodes. A chronogram, constructed using Bayesian inference with multiple parametric priors, and recent ecological data reveal that corallivory has arisen at least five times over a period of 12 Ma, from 15.7 to 3 Ma. A move onto coral reefs in the Miocene foreshadowed rapid cladogenesis within Chaetodon and the origins of corallivory, coinciding with a global reorganization of coral reefs and the expansion of fast‐growing corals. This historical association underpins the sensitivity of specific butterflyfish clades to global coral decline.     

Genetic and Ecological Characterisation of Colour Dimorphism in a Coral Reef Fish

Synopsis Many recognised species of coral reef fishes exhibit two or more colour variants, but it is unknown whether these represent genetically identical phenotypes, genetic polymorphisms or closely related species. We tested between these alternatives for two colour morphs of the coral reef fish, Pseudochromis fuscus, from Lizard Island (Great Barrier Reef). A molecular analysis using mtDNA did not detect any genetic differentiation between co-occurring ‘yellow’ and ‘brown’ colour morphs. A previous study proposed that these two colour morphs are aggressive mimics of yellow and brown damselfishes. Here, a manipulative field experiment was used to evaluate whether the colour dimorphism in P. fuscus is a phenotypic response to the presence of two different model species. Colonies of either yellow or brown damselfish species were established on different patch reefs, and each of the two different P. fuscus morphs was then placed on the different reefs. Contrary to expectations, all yellow individuals that stayed on the reefs changed to brown, regardless of the model species. No brown individuals changed to the yellow colouration. However, P. fuscus were more likely to emigrate from, or suffer higher mortality on, patch reefs where they were not matched with similarly coloured models. Clearly, yellow and brown P. fuscus are members of a single species with sufficient phenotypic plasticity to switch from yellow to brown colouration.     

Neogene reef coral assemblages of the Bocas del Toro region, Panama: the rise of Acropora palmata

Temporal patterns are evaluated in Neogene reef coral assemblages from the Bocas del Toro Basin of Panama in order to understand how reef ecosystems respond to long-term environmental change. Analyses are based on a total of 1,702 zooxanthellate coral specimens collected from six coral-bearing units ranging in age from the earliest Late Miocene to the Early Pleistocene: (1) Valiente Formation (12–11 Ma), (2) Fish Hole Member of the Old Bank Formation (5.8–5.6 Ma), (3) La Gruta Member of the Isla Colon Formation (2.2–1.4 Ma), (4) Ground Creek Member of the Isla Colon Formation (2.2–1.4 Ma), (5) Mimitimbi Member of the Urracá Formation (1.2–0.8 Ma), and (6) Hill Point Member of the Urracá Formation (1.2–0.8 Ma). Over 100 coral species occur in the six units, with faunal assemblages ranging from less than 10% extant taxa (Valiente Formation) to over 85% extant taxa (Ground Creek Member). The collections provide new temporal constraints on the emergence of modern Caribbean reefs, with the La Gruta Member containing the earliest occurrence of large monospecific stands of the dominant Caribbean reef coral Acropora palmata, and the Urracá Formation containing the last fossil occurrences of 15 regionally extinct taxa. Canonical correspondence analysis of 41 Late Miocene to Recent reef coral assemblages from the Caribbean region suggests changes in community structure coincident with effective oceanic closure of the Central American Seaway (~3.5 Ma). These changes, including increased Acropora dominance, may have contributed to a protracted period of elevated extinction debt prior to the major peak in regional coral extinctions (~2–1 Ma).     

Advertising acceptability: is mollusk olfaction important in seedling selection?

Although seedling herbivory is an important selective filter in many plant communities, how and why seedlings are selected is poorly understood. Here, we examined the putative role of herbivore olfaction in dictating seedling selection. Using a Y-tube olfactometer we compared snail (Helix aspersa) preference for pellets derived from 14-day-old macerated seedlings of nine European grassland (‘Test’) species against standard (‘Control’) pellets derived from lettuce. Snail movement towards ‘Test’ pellets was strongly correlated with seedling acceptability (Pearson’s r ² = 0.86, P > 0.01) and where snails exhibited a positive choice for the ‘Test’ species, the choice was made more quickly for highly acceptable species (r ² = 0.86, P > 0.01). In elucidating a link between seedling acceptability and olfactory response to macerated seedlings, our study suggests that even from an early ontogenetic stage plant selection by snails may be governed by olfactory cues. This finding highlights the need for research on the role of plant volatiles in plant–herbivore interactions to consider more fully interactions operating at the seedling stage.     

Radiolarian faunal turnover across the Oligocene/Miocene boundary in the equatorial Pacific Ocean

The global warming trend of the latest Oligocene was interrupted by several cooling events associated with Antarctic glaciations. These cooling events affected surface water productivity and plankton assemblages. Well-preserved radiolarians were obtained from upper Oligocene to lower Miocene sediments at Ocean Drilling Program (ODP) Leg 199 Sites 1218 and 1219 in the equatorial Pacific, and 110 radiolarian species were identified.Four episodes of significant radiolarian faunal changes were identified: middle late Oligocene (27.5 to 27.3 Ma), latest Oligocene (24.4 Ma), earliest Miocene (23.3 Ma), and middle early Miocene (21.6 Ma). These four episodes approximately coincide with increases and decreases of biogenic silica accumulation rates and increases in δ¹⁸O values coded as “Oi” and “Mi” events. These data indicate that Antarctic glaciations were associated with change of siliceous sedimentation patterns and faunal changes in the equatorial Pacific.Radiolarian fauna was divided into three assemblages based on variations in radiolarian productivity, species richness and the composition of dominant species: a late Oligocene assemblage (27.6 to 24.4 Ma), a transitional assemblage (24.4 to 23.3 Ma) and an early Miocene assemblage (23.3 to 21.2 Ma). The late Oligocene assemblage is characterized by relatively high productivity, low species richness and four dominant species of Tholospyris anthophora, Stichocorys subligata, Lophocyrtis nomas and Lithelius spp. The transitional assemblage represents relatively low values of productivity and species richness, and consists of three dominant species of T. anthophora, S. subligata and L. nomas. The characteristics of the early Miocene assemblage are relatively low productivity, but high species richness. The two dominant species present in this assemblage are T. anthophora and Cyrtocapsella tetrapera. The most significant faunal turnover of radiolarians is marked at the boundary between the transitional/early Miocene assemblages.We also reviewed changes in other microfossil assemblages in the low latitudes during the late Oligocene through early Miocene. The microfossil assemblages of major groups show sequential changes near the Oligocene/Miocene (O/M) boundary (23.8 Ma). Many extinction events and some first occurrences of calcareous nannofossils and many occurrences of radiolarians are found from about 24.8 to 23.3 Ma, and first occurrences of planktic foraminifers and diatoms followed from 23.2 through 22 Ma. Hence, the O/M boundary is identified as a significant level for microfossil evolutions.     

Genetic transformation of three sweet orange cultivars from explants of adult plants

The difficulty in adult tissue genetic transformation in woody species is still an obstacle to be overcome, including in most sweet orange cultivars of the Brazilian citrus industry. This work reports that, after in vitro culture adjustments, transgenic adventitious buds of ‘Hamlin’, ‘Pêra’, and ‘Valencia’ sweet oranges (Citrus sinensis L. Osbeck) were recovered using adult material as explant source, in genetic transformation experiments via Agrobacterium tumefaciens. The transgenic buds were identified by the GUS histochemical analysis and confirmed by PCR analysis, which indicated the presence of an amplified fragment of 817 bp corresponding to the uidA gene sequence. The efficiencies of genetic transformation for ‘Hamlin’, ‘Pêra’, and ‘Valencia’ sweet orange cultivars were 2.5, 1.4, and 3.7%, respectively. Media supplemented with auxins and cytokinins during co-culture, and media with high concentrations of cytokinins (3 mg L⁻¹) during transgenic selection led to the transformation and, consequently, the regeneration of adequate number of adventitious buds for the three cultivars. The use of sonication during the explant disinfection was not effective to reduce endophytic contamination and reduced transformation efficiency.     

Hybrid origin of some ornamentals of Allium subgenus Melanocrommyum verified with GISH and RAPD

 Random amplified polymorphic DNA (RAPD) and genomic in situ hybridization (GISH) methods have been used to verify the hybridogenic origin and to identify the parental species of some ornamental cultivars in the subgenus Melanocrommyum of the genus Allium. The cultivars had been selected from seed obtained after uncontrolled pollination in breeders’ fields. The combination of GISH analysis with RAPD markers is very suitable for testing the hybridogenic origin of plants and to ascertain the parental species of the hybrids in such cases. As suspected, A. macleanii and A. cristophii are the parental species of ‘Globemaster’. The parental species of cultivar ‘Globus’ are A. karataviense and A. stipitatum, and not A. cristophii and A. giganteum as has been assumed on morphological grounds. Cultivars ‘Lucy Ball’ and ‘Gladiator’ are of hybrid origin, though only one of the parental species, A. hollandicum, could be confirmed. The cultivars ‘Purple Sensation’, ‘Mount Everest’, ‘White Giant’, ‘Michael H. Hoog’ and ‘Mars’ are not hybrids since neither GISH nor RAPD suggest the presence of a second genome. ‘Purple Sensation’ belongs to A. hollandicum, ‘Mount Everest’, ‘White Giant’ and ‘Mars’ to A. stipitatum,‘Michael H. Hoog’ to A. rosenorum. Received: 3 July 1997 / Accepted: 9 October 1997     

Sponge borehole size as a relative measure of bioerosion and paleoproductivity

Bioerosion intensity has been proposed as a measure of paleoproductivity in fossil reefs, but it is difficult to measure directly because fossil corals are often incomplete and because it is difticult to infer the length of time a given coral was exposed to bioeroding organisms. Both nutrient availability and taphonomic factors can affect bioerosion intensity as measured in dead corals. Here, we examine these two effects separately using data from previous studies on bioerosion in modern and fossil corals. Size of individual sponge borings accurately reflects total bioerosion in modern massive and branching corals on the Great Barrier Reef. Total bioerosion in both massive and branching corals decreases outward across the continental shelf, paralleling trends in nutrient availability. Size of individual Cliothosa hancocki borings decreases across the shelf in branching Acropora but not in massive Porites. Fossil sponge borings Entobia convoluta and Uniglobites glomerata in massive corals from Oligocene and Miocene reefs in Puerto Rico are smallest in Oligocene shelf-edge reefs, intermediate in Oligocene patch reefs, and largest in Miocene patch reefs. Both facies-related influence, represented by Oligocene shelf-edge reefs vs. Oligocene patch reefs, and nutrient-related influence, represented by Oligocene vs. Miocene patch reefs, were reflected in the size of sponge boreholes. Size of sponge borings also varies among species of host corals, apparently in relation to skeletal architecture. Borehole size is inversely correlated with skeletal density as measured by the relative proportion of skeleton and pore space in transverse thin section. There is a weak positive correlation between borehole size and corallite diameter. These findings contradict reported positive correlations between total bioerosion and bulk density in modern corals. Borehole size appears accurately to reflect intensity of total internal bioerosion in fossil corals. Facies-controlled taphonomic overprints and influence of skeletal differences between coral species limit the use of sponge borehole size to a rough indicator of paleoproductivity in fossil coral reef environments.     

Coral communities and reef growth in the southern Great Barrier Reef

 Fringing reef development is limited around 22° S along the inner Great Barrier Reef, although there is substantial development north and south of this latitude. This study examined the relationships among coral communities and the extent of reef development. Reefs were examined to determine coral composition, colony abundance, colony size and growth form between the latitudes 20°S and 23°S. Major reef framework builders (scler- actinian genus Acropora and families Faviidae and Poritidae) dominated reefs north and south of 22°S, but declined significantly at 22°S where foliose and encrusting corals (Turbinaria and Montipora spp.) were most common. Porites spp. were present at 22° S but had encrusting morphologies. Consistently high turbidity at this latitude, caused by a 10 m tidal range and strong tidal flows, resuspends silts from the shallow shelf, and appears to have precluded reef development throughout the Holocene, by limiting the abundance, stunting the growth, and shortening the life expectancies of reef framework corals. The distinctions between ‘natural’ and ‘human-induced’ degradation may be interpreted on the basis of the relationship between Holocene development and current benthic community longevity. A mismatch between substantial past reef building capacity (a broad and/or thick reef) and non-existent or limited present reef-building capacity could signify anything from a long-period, natural cycle to an unprecedented deterioration in ecosystem function caused by human influence. Accepted: 29 July 1996     

Molecular diversity of symbiotic algae (zooxanthellae) in scleractinian corals of Kenya

In this first sequence analysis of ‘zooxanthellae’ (symbiotic algae of the genus Symbiodinium) in scleractinian corals in Africa, seven Kenyan species sampled in 2001–2002 were analysed by RFLP and sequencing of a PCR-amplified fragment of the LSU rRNA gene. Zooxanthellae of phylotypes A, C and D, all described previously in corals from other regions of the world, were detected. All sequences of phylotype D were identical, while phylotype C was variable, with 14 distinct sequences, seven of which clustered in a previously unreported subgroup of phylotype C, among the 22 samples. These data on the diversity of zooxanthellae in Kenyan corals 3–4 years after the 1998 bleaching event are of potential value for longitudinal studies of temporal changes in zooxanthella diversity in Kenyan corals, especially in relation to future large-scale bleaching episodes.