基于生物膜干涉技术检测PDL1抗体与PDL1抗原的亲和力

生物膜干涉（biolayer interferometry,BLI）技术可对抗体与抗原的相互作用进行亲和力、动力学的全面分析。在抗体克隆筛选、动力学常数测定中对链霉亲和素（streptavidin,SA）生物传感器的需求量较大,但目前鲜有关于SA传感器重复利用的报道。基于BLI技术、再生SA生物传感器建立一种使用再生后的传感器检测PDL1抗体与PDL1抗原亲和力的方法。通过将生物素化的PDL1抗原偶联至SA生物传感器上,再与单链抗体、双价单链抗体、完整抗体和双特异性抗体这4类PDL1抗体结合,计算抗原抗体的亲和力常数,利用甘氨酸（10 mmol·L^-1,pH 1.7）再生SA传感器,再次进行分子间相互作用力分析。结果显示,重复性相对标准偏差（relative standard deviation,RSD）均值为6.87%,批间重复性RSD为0.82%,稳定性RSD均值为6.13%,说明运用甘氨酸再生后的SA生物传感器测分子间的亲和力数据可靠、重现性好、稳定性高,再生后的传感器可继续用于本样品的实时、无标记的抗原抗体相互作用力分析。BLI技术可节省检测成本,为SA传感器的重复利用提供理论依据。     

生物大分子体系及其相互作用的计算机模拟

生物大分子体系及其相互作用的计算机模拟陈凯先（中国科学院上海药物研究所２０００３１）随着分子生物学的发展和计算机技术的进步,运用各种数学、物理学的理论方法,以计算机作为工具进行生物学的基本理论研究,特别是进行生物大分子体系及其相互作用的计算机分子图形...     

SPR生物传感器的特点及其在生物特异性相互作用分析中的应用

利用表面等离子模共振技术（SPR）进行生物特异性相互作用分析（BIA）已成为现代基因工程技术中的一种先进的手段。与传统的研究方法如酶联免疫吸附测定（ELISA）相比,它具有方便快捷、灵敏度高,应用范围广,实时监控等多项特点,利用这种新型研究手段对于生命科学的基础研究。医学诊断以及治疗等方面有着十分重的意义。本粗略概括了近几年来利用SPR生物传感器进行基础研究的基本情况以及对其的改进,并简要分析了此项技术的优点以及发展前景。     

生物大分子溶液三维结构及分子间相互作用的波谱研究

生物大分子溶液三维结构及分子间相互作用的波谱研究吴厚铭（中国科学院上海有机化学研究所生命有机化学国家重点实验室２０００３２）生物活性分子的溶液空间结构及分子间作用（如蛋白质与核酸,信息分子,各种调节剂,拮抗剂,以及核酸与药物分子等相互作用）的研究是发...     

生物分子相互作用分析技术的一次突破

细胞生命活动的过程,无不涉及两个或多个生物分子之间相互作用,如信号传导、免疫反应、酶与底物作用等。因此,为了更好地研究生命过程,就迫切需要开发出一种能实时检测出生物分子间相互作用的系统,Phar－maca公司于90年代初就开发出了这样一种技术,即BM技术（BiornoecularInterationAnalssis）,该技术是基于表面等离子共振（Snd。PI。R。ce,简称SPR）的光物理现象［fi。在该现象中,所检测出的共振角与结合在传感片表面的生物分子的质量呈正比例关系。因此以时间对共振角（以共振单位表示）作图可记录相互作用的动态全过程,…     

生物学中荧光共振能量转移的研究应用进展

荧光共振能量转移（FRET）可用于对生物大分子之间的距离进行定性、定量检测,所采用的材料、方法在近年都有了很大的发展,在核酸、蛋白质、细胞器结构功能检测、免疫测定、配体－受体相互作用测定等方面都有巧妙而有效的应用,应用前景十分广阔。     

生物复杂性研究动态

生物复杂性（biocomplexity或biological complexity）是近年来由Rita Colwell等人积极倡导的一个新的学科领域,旨在更好地了解生命系统及其环境组分间的相互作用以及系统复杂性的动态特征与演化机制,目前,生物复杂性的定义与内涵尚不明确,意见纷呈,而有关研究在美国国家科学基金会（NSF）的支持下已迅速开展起来,并即将成为国际合作研究的热点之一。本文简要介绍了有关生物复杂性的不同观点、生物复杂性与生物多样性研究之间的关系,并以若干生态系统和基因组为例,说明了现阶段生物复杂性研究的主要特点。     

Celltrion公司的抗体生物仿制药在韩国获得批准

2012年7月23日,韩国食品与药品管理局（KFDA）批准了韩国Celltrion公司申请的风湿病治疗药Remicade（英利昔单抗,infliximab）生物仿制药。抗体的生物仿制药除了印度Dr．Reddy公司在销售Reditux（利妥昔单抗,rituximab）之外,还没有其他国家批准过。通过发达国家的审查标准,被批准的抗体仿制药实属世界首例。     

磷烯纳米材料的生物毒性研究进展

磷烯,即单层黑磷（BP）,由于具有直接带隙、显著的结构和功能各向异性、高电荷载流子迁移率等,已经在生物医学、药物输送、生物传感、疾病的诊断和治疗等领域取得了很大的进展。和其他纳米材料相比,磷烯具有更优异的生物相容性和生物可降解性,在生物医药领域有很好的应用前景。虽然已有大量磷烯生物学效应的报道,但磷烯与生物大分子,如核酸、脂质、蛋白质之间相互作用的过程细节仍缺乏系统的研究。目前实验上无法观测磷烯与生物分子相互作用的动力学过程,分子模拟在获取精确动态结构方面具有独特的优势,被广泛应用于纳米材料和生物学领域。本文综述了近年来国内外利用计算机仿真和实验方法在磷烯纳米材料与蛋白质、脂质膜和DNA等生物大分子相互作用方面取得的最新研究进展,对磷烯生物毒性目前的研究进行了评述,并对未来需要解决的问题作了分析。本文将促进磷烯生物学效应的基础研究,也将推动磷烯纳米材料在生物医药领域的应用。     

光学蛋白芯片技术在噬菌体M13KO7检测中的应用

将亲和素共价固定在表面改性后的硅片上,通过亲和素与生物素相互作用将生物素标记的噬菌体抗体GP3固定在亲和素膜层表面,当含有M13KO7噬菌体的样品经过抗体表面时,通过噬菌体与抗体之间的相互作用噬菌体就会被抗体捕获,生物学信号可以通过芯片上的膜层厚度变化表现出来,这种膜层厚度变化可以被椭偏生物传感器技术识别。结果表明,GP3抗体在芯片表面形成了饱和的抗体膜层,厚度为6.9nm;M13KO7噬菌体与芯片上固定的抗体会发生特异性相互作用,噬菌体被抗体捕获后形成的复合物膜层厚度为17.5nm,并且随着噬菌体浓度升高膜层厚度增加,检测含有M13KO7噬菌体的样品灵敏度为109pfu/mL。与其它研究病毒与抗体相互作用方法相比光学蛋白芯片技术具有简便快捷、无需标记待检样品和结果直观等优点,为研究病毒与其抗体相互作用以及疾病早期临床诊断提供了一个新的方法。     

Impact of surface thermodynamics on bacterial transport

Microbial surface thermodynamics correlated with bacterial transport in saturated porous media. The surface thermodynamics was characterized by contact-angle measurement and the wicking method, which was related to surface free energies of Lifshitz–van der Waals interaction, Lewis acid–base interaction, and electrostatic interaction between the bacteria and the medium matrix. Transport of three different strains of bacteria present at three physiological states was measured in columns of silica gel and sand from the Canadian River Alluvium (Norman, OK, USA). Microorganisms in stationary state had the highest deposit on solid matrix, compared with logarithmic and decay states. The deposition correlated with the total surface free energy (Δ G₁₃₂^TOT ) and the differences in Δ G₁₃₂^TOT were mainly controlled by the Lewis acid–base interaction. Infrared spectroscopy showed that the increased deposition correlated with an increase in the hydrogen-bonding functional groups on the cell surfaces.     

Interaction of proteins with lipid monolayers at the air-solution interface studied by reflection spectroscopy

The interaction of a fluorescein-labelled insulin and of cytochrome C with the air-solution interface and with lipid monolayers at the air-solution interface has been studied by measuring the change in surface pressure at constant area and by reflection spectroscopy. Chromophores at the interface only give rise to enhanced light reflection without contribution to the signal from chromophores in the bulk. The accumulation of labelled insulin at the solution surface is very weak as concluded from the shape of the spectrum and reflection intensity. No interaction with a monolayer of dipalmitoyl-phosphatidylcholine at initial surface pressure of 5mN/m was detected. In contrast, the interaction with monolayers of dioctadecyl-dimethyl-ammonium bromide at initial surface pressures between 5 and 40 mN/m is much stronger, leading to a remarkable increase of surface pressure at constant area and strong reflection signal. The technique was also used to detect cytochrome C at the air-solution interface.     

Electrochemical studies of DNA immobilization onto the azide-terminated monolayers and its interaction with taxol

A surface modification procedure for the creation of self-assembled monolayers (SAMs) that can be used as a scaffold for double-stranded DNA (dsDNA) incorporation onto the gold surfaces is described. The SAMs of an azidohexane thiol derivative were prepared on the Au electrode and then used for the immobilization of dsDNA. The electrochemical characteristics of dsDNA onto the SAM-modified gold electrode were investigated by cyclic voltammetry and electrochemical impedance spectroscopy, and the surface concentration of dsDNA onto the SAMs surface was estimated. The interaction of dsDNA with the anticancer drug, taxol (paclitaxel), was also studied on the surface of DNA/SAM/Au electrode. The observed decrease in the guanine oxidation peak current was used to monitor the interaction of taxol with DNA. The resulting Langmuir isotherm for taxol binding to DNA at the modified electrode was used to evaluate the binding constant of taxol-DNA. The results obtained supported the groove binding interaction of taxol with DNA. The modified electrode was used as a sensitive sensor for quantification of taxol in human serum sample.     

Surface plasmon resonance based pesticide assay on a renewable biosensing surface using the reversible concanavalin A monosaccharide interaction

A competitive immunoassay based on surface plasmon resonance (SPR) for the detection of the pesticide 2,4-dichlorophenoxyacetic acid (2,4-D) is reported. The novelty of the assay is based on the regeneration of the chip surface by the reversible interaction between monosaccharide (D-glucose) and lectin (Concanavalin A). Concanavalin A-2,4-D conjugate was chemically synthesized, purified and used for binding to the SPR chip modified with covalently bound alpha-D-glucose. The interaction between anti-2,4-D antibody and the surface-bound concanavalin A-2,4-D conjugate was monitored by surface plasmon resonance and the response was used for the quantification of 2,4-D. The dynamic range of the calibration curve was between 3 and 100 ng/ml. The demonstrated principle of surface regeneration based on the reversible sugar-lectin interaction may be of more general applicability in immunoassays.     

The hydrophobicity of bacteria — An important factor in their initial adhesion at the air-water inteface

Bacteria isolated from the surface and the subsurface water at four stations along the Swedish west coast were assessed for their hydrophobicity with hydrophobic interaction chromatography (HIC). The surface bacteria were sampled by the Teflon sheet technique. [³H]-l-leucine metabolically labeled isolates were run on a column packed with Octyl-Sepharose CL-4B gel. The relative hydrophobicity of the bacteria was expressed as the ratio, g/e, between the radioactivity of the gel and the eluate. The results revealed a positive correlation between the degree of enrichment of bacteria at the surface and their hydrophobicity. The subsurface bacteria exhibited a broader spectrum of g/e-values than the surface bacteria. The initial adhesion of bacteria to the surface microlayer depends on several factors of which the hydrophobic interaction may be one of the most important.Abbreviations HIC hydrophobic interaction chromatography - NSS nine salt solution     

Surface plasmon resonance imaging-based protein arrays for high-throughput screening of protein-protein interaction inhibitors

The E7 protein produced by high-risk human papillomavirus (HPV) induces a degradation of the retinoblastoma tumor suppressor RB through direct interaction, which suggests that an inhibitor for the interaction can be a potential anticancer drug. A surface plasmon resonance (SPR) imaging-based protein array chip was developed for the high-throughput screening of inhibitor molecules targeting RB-E7 interaction. The glutathione S-transferase-fused E7 protein (GST-E7) was first layered onto a glutathionylated gold chip surface that had been designed to specifically bind to GST-fused proteins. Subsequently, a microarrayer was used to spot the hexa-histidine-tagged RB proteins (His(6)-RB) onto the GST-E7-layered gold chip surface, and the resulting SPR image was analyzed. Upon increased His(6)-RB concentration in the spotting solution, the SPR signal intensity increased proportionally, indicating that His(6)-RB bound to GST-E7 in a concentration-dependent manner. The His(6)-RB/GST-E7 interaction was challenged by spotting the His(6)-RB solution in the presence of a RB binding peptide (PepC) derived from a motif on E7. The SPR imaging data showed that PepC inhibited the His(6)-RB/GST-E7 interaction in a concentration-dependent manner. Our results show that the SPR imaging-based protein array chip can be applied to screen small molecule inhibitors that target protein-protein interaction.     

Biophysical properties of a synthetic transit peptide from wheat chloroplast ribulose 1,5-bisphosphate carboxylase.

The surface properties of pure RuBisCo transit peptide (RTP) and its interaction with zwitterionic, anionic phospholipids and chloroplast lipids were studied by using the Langmuir monolayer technique. Pure RTP is able to form insoluble films and the observed surface parameters are compatible with an alpha-helix perpendicular to the interface. The alpha-helix structure tendency was also observed by using transmission FT-IR spectroscopy in bulk system of a membrane mimicking environment (SDS). On the other hand, RTP adopts an unordered structure in either aqueous free interface or in the presence of vesicles composed of a zwitterionic phospholipid (POPC). Monolayer studies show that in peptide/lipid mixed monolayers, RTP shows no interaction with zwitterionic phospholipids, regardless of their physical state. Also, with the anionic POPG at high peptide ratios RTP retains its individual surface properties and behaves as an immiscible component of the peptide/lipid mixed interface. This behaviour was also observed when the mixed films were composed by RTP and the typical chloroplast lipids MGDG or DGDG (mono- and di-galactosyldiacylglycerol). Conversely, RTP establishes a particular interaction with phosphatidylglycerol and cardiolipin at low peptide to lipid area covered relation. This interaction takes place with an increase in surface stability and a reduction in peptide molecular area (intermolecular interaction). Data suggest a dynamic membrane modulation by which the peptide fine-tunes its membrane orientation and its lateral stability, depending on the quality (lipid composition) of the interface.     

Association with HeLa cells of LPS mutants of Salmonella typhimurium and Salmonella minnesota in relation to their physicochemical surface properties

Different LPS mutants of Salmonella typhimurium and Salmonella minnesota have been investigated with respect to (1) their tendency to associate with HeLa cell monolayers, and (2) their physicochemical surface properties. Aqueous biphasic partitioning, hydrophobic interaction chromatography, and ion exchange chromatography have been used to characterize the bacterial cell surface properties with respect to charge and hydrophobicity. Liability to hydrophobic interaction was defined either by the change of partition in a dextran-polyethylene-glycol (PEG) system by the addition of PEG-palmitate (P-PEG), or by the elution pattern from Octyl-Sepharose. Accordingly, charge was asssessed by the effect of positively charged trimethylamino-PEG (TMA-PEG) on the partition, and by the elution from DEAE-Sephacel. Bacterial being negatively charged and liable to hydrophobic interaction had the highest tendency to associate with HeLa cells. In some cases the methods for surface analysis gave conflicting results on charge and/or liability to hydrophobic interaction of the same LPS mutant. Possible reasons for these differences and the role of bacterial cell surface structures contributing to physicochemical character are discussed.     

Influence of an S-layer on surface properties of Bacillus stearothermophilus

Various aspects of surface properties of the S-layer-carrying Bacillus stearothermophilus PV72 and of an S-layer-deficient mutant (strain PV72/T5) have been tested by adsorption assays on solid surfaces, electrostatic interaction chromatography and hydrophobic interaction chromatography. The adsorption assays have shown that cell adhesion of the S-layer-carrying strain was less influenced by environmental changes than it was with the S-layer-deficient mutant. Electrostatic interaction chromatography indicated that both strains have positively and negatively charged groups exposed on the cell surface but the S-layer-carrying strain reveals more positively charged groups than does the S-layer-deficient mutant. Hydrophobic interaction chromatography showed that both strains have a hydrophilic surface but that the hydrophilic properties are more pronounced with the strain lacking an S-layer.