工程改造龟裂链霉菌提高土霉素产量

土霉素是由龟裂链霉菌合成的一类广谱性抗生素,前期研究工作证明其生物合成受其自身途径特异性调控蛋白OtcR的直接调节,OtcR能够激活和促进土霉素合成基因簇的转录表达。在龟裂链霉菌M4018宿主内利用强启动子单独过表达OtcR蛋白,使土霉素的产量提高到原来产量的4倍;为了进一步提高土霉素产量,在M4108宿主内表达乙酰辅酶A羧化酶基因,提高其胞内土霉素合成的前体物丙二酸单酰辅酶A的含量。对出发菌株M4018进行工程改造,同时过表达途径特异性调控蛋白OtcR和乙酰辅酶A羧化酶,发酵检测改造后的重组工程菌株土霉素的产量由1.37g/L提高到9.09g/L,该研究策略对工程改造龟裂链霉菌提高土霉素的产量具有重要的指导意义。     

13CMFA过程中GC-MS分析菌体蛋白氨基酸的13C标记丰度

基于13C标记的代谢通量分析(13CMFA)由于具有准确性和应用性已成为国际上代谢工程研究的热点,其中一个至关重要的问题就是分析菌体蛋白氨基酸的13C标记丰度信息。用含20%全标记葡萄糖（［U-13C］）和80%天然葡萄糖的合成培养基喂养维生素B12生产菌Pseudomonas denitrifican,然后在稳态条件下取20mg带13C标记菌体用1ml 6mol/L盐酸95℃水解24h得到带13C标记的菌体蛋白氨基酸;氨基酸经分离、浓缩、真空干燥、MBDSTFA衍生化后得到的TBDMS衍生物可以用气相色谱-质谱(GC-MS)进行分析,最后分析质谱图得到15种菌体蛋白氨基酸的13C标记丰度信息。成功获得菌体蛋白氨基酸13C标记丰度信息的实验方法和样品处理技术,为13CMFA在国内进一步发展提供了参考意义。     

吸水链霉菌ATCC 29253产Hygrocin A发酵条件的优化

【背景】Hygrocins是一种萘安莎抗生素,具有良好的新药开发潜能。但在常见培养基及发酵条件下菌体内Hygrocin A含量一般很低,甚至难以直接进行准确检测。【目的】提高吸水链霉菌ATCC 29253发酵物中Hygrocin A的产量。【方法】采用单因素与正交试验设计优化相结合的方法系统考察碳源、氮源、磷酸盐、MgCl_2浓度、NaCl浓度、种子菌龄等因素对吸水链霉菌ATCC 29253产Hygrocin A能力的影响。【结果】最佳发酵条件为(g/L):葡萄糖4.0,黄豆饼粉8.0,麦芽提取物10.0,K_2HPO_4 1.5,KH_2PO_4 1.5,NaCl 1.5,Mg Cl2 1.0;种子最佳活化时间为48 h;培养参数:摇床转速200 r/min,初始pH为6.8-7.0,瓶装量50 m L/250 m L,接种量5%,30°C培养10 d。在优化条件下,Hygrocin A产量与其原始培养基M10相比提高了500%,Rapamycin产量同时下降了95%。【结论】通过培养基优化,可显著提高吸水链霉菌ATCC 29253中Hygrocin A产量,为Hygrocin A合成应用研究奠定基础,同时可使Rapamycin产量明显下降。这说明可通过选择培养条件有目的地调节两种抗生素的代谢通量,进而开展多种抗生素同时表达的代谢调控研究。     

Genome shuffling筛选ε-聚赖氨酸高产菌及其对代谢流量分配的影响

【目的】从代谢流量分配的角度,探讨Genome shuffling导致链霉菌ε-聚赖氨酸合成量提升的原因。【方法】从葡萄糖耐受型的亲本菌株Streptomyces sp.AS32和ε-聚赖氨酸耐受型的亲本菌株Streptomyces albulus F15出发,进行三轮Genome shuffling,筛选得到ε-聚赖氨酸产量提高的链霉菌株Streptomyces sp.AF3-44,采用通量分析方法构建链霉菌ε-聚赖氨酸合成代谢网络,并对上述3株菌的代谢通量进行比较。【结果】AF3-44的ε-聚赖氨酸摇瓶产量为3.1 g/L,较AS32和F15分别提高了34%和29%。3株菌株中AS32三羧酸循环(TCA)的代谢通量最高;F15磷酸戊糖途径(PPP)代谢通量最高;AF3-44流向赖氨酸合成前体天冬氨酸以及ε-聚赖氨酸的通量最高,TCA和PPP通量位于两亲本菌株的中间水平,其中TCA中流向异柠檬酸的通量分别为AS32和F15的77%和116%,PPP中流向5-磷酸核酮糖的通量分别为AS32和F15的149%和92%。【结论】Genome shuffling导致了代谢流的重新分布,流向前体赖氨酸和ε-聚赖氨酸通量的增加,以及PPP和TCA通量配比的改变是链霉菌ε-聚赖氨酸合成量增加的重要因素。     

高产番茄红素链霉菌选育及摇瓶发酵研究

番茄红素的抗氧化能力目前在类胡萝卜素中最强,是近年来国际上功能食品成分研究的热点。在国内首次利用龟裂链霉菌（Streptomyces rimosus）发酵生产番茄红素,建立了分光光度计法和HPLC法等番茄红素测定方法;以一株龟裂链霉菌Fc作为出发菌株,进行紫外诱变,筛选到一株突变高产菌株Fc’,其番茄红素产量较出发菌株提高2.5倍;通过摇瓶发酵实验优化培养条件,使菌株Fc’的番茄红素产量达到230 mg/L,并且在不添加任何阻断剂的情况下,利用链霉菌发酵可获得纯度较高的番茄红素。该结果为今后利用链霉菌工业化生产番茄红素奠定了良好基础。     

龟裂链霉菌zwf2基因阻断提高土霉素生物合成

葡萄糖-6-磷酸脱氢酶(G6PDH)是链霉菌磷酸戊糖途径中第一个酶("看家"酶),也是形成NADPH的关键酶,由zwf1和zwf2基因编码.以温敏型质粒pKC1139为基础构建了用于阻断龟裂链霉菌zwf2的重组质粒pKC1139-zwf2',通过大肠杆菌GM2929去甲基化pKC1139-zwf2'后电转至原始龟裂链霉菌M4018感受态细胞,筛选得到转化子.转化子进一步通过PCR鉴定和点杂交印迹分析鉴定,证明是zwf2基因阻断的阳性突变子命名为M4018-△zwf2.以原始菌株为对照,突变子摇瓶发酵结果表明:突变子的葡萄糖-6-磷酸脱氢酶酶活是原始菌的50%左右,但土霉素生物合成水平则提高了27%;在细胞生长方面,二者均在第4d进入生长稳定期而开始大量合成土霉素,发酵结束时细胞菌体浓度基本相同,但突变子的单位菌丝体土霉素生物合成能力则提高了31%.因此,zwf2的阻断有利于土霉素的生物合成,而对细胞生长没有明显影响.     

生物转化法合成16α-羟基泼尼松龙的发酵工艺研究

目的:研究1株玫瑰产色链霉菌(Streptomyces roseochromogenes)的发酵培养基和底物转化条件,以提高16α-羟基泼尼松龙的转化率。方法:采用紫外与氯化锂复合诱变获得目的菌株TS-58,利用正交实验等方法考查摇瓶发酵条件,研究不同浓度的碳源、氮源对玫瑰产色链霉菌生长的影响,以及不同底物浓度、底物加入时间、装液量、金属离子和添加助溶剂等条件对转化生成16α-羟基泼尼松龙能力的影响。结果:获得最佳转化培养基为葡萄糖10 g/L、可溶性淀粉50 g/L、蛋白胨10 g/L、黄豆饼粉25 g/L、磷酸二氢钾0.2 g/L、硫酸镁0.5 g/L硫酸锌0.5 g/L。在底物投料量5 mg/mL添加0.8 mg/ml PEG助溶剂的最优条件下,16α-羟基泼尼松龙的转化率达到了13.8%。结论:突变株Streptomyces roseochromogenes TS-58能有效地在泼尼松龙上引入16α-羟基羟基,为工业生产16α-羟基泼尼松龙奠定了基础。     

Fostriecin产生菌Streptomyces pulveraceus遗传转化体系的建立与优化

【目的】建立并优化链霉菌Fostriecin产生菌Streptomyces pulveraceus的遗传转化系统。【方法】以整合型质粒pSET152为出发质粒,通过供体菌E.coli ET12567/pUZ8002与受体菌Streptomyces pulveraceus进行接合转移。【结果】确定了链霉菌Streptomyces pulveraceus的最佳接合转移条件:培养基为终浓度含15%甘氨酸的MS培养基;孢子热激条件为50°C 10 min;阿伯拉霉素覆盖的时间为18 h,终浓度为20 mg/L。同时,把组成型启动子ermE+与绿色荧光蛋白基因(gfp)克隆到pSET152载体上,通过接合转移整合到该链霉菌中,gfp获得表达。【结论】建立Fostriecin产生菌的遗传转化系统,并发现甘氨酸能显著提高链霉菌的接合转移效率。     

应用于二维电泳细胞蛋白质样品提取的复合蛋白酶抑制剂的优化

阿维链霉菌在复合培养基中生长时合成大量蛋白酶以满足菌体分解有机氮源进行生长代谢的需要。而大量蛋白酶的存在对二维电泳的蛋白质组分析细胞蛋白质样品的提取带来了很大的困难。根据阿维链霉菌胞内蛋白酶的组成,以EDTA、PMSF、Bestatin、Pepstatin和E-64等5种蛋白酶抑制剂为基础,通过单因子实验和正交实验优化得到了高效的蛋白酶抑制剂复合配方。验证实验表明,该复合蛋白酶抑制剂在阿维链霉菌细胞蛋白质样品提取中,具有良好的蛋白酶活性抑制效果。     

一株氨氧化链霉菌的分类鉴定及其氨氧化特性的研究

从硝化反应器中分离获得一株链霉菌。根据其形态特征、培养特征、生理生化特性,（G+C）mol％含量以及16S rDNA序列和DNA杂交结果,将其归入链霉菌属中的比基尼链霉菌（Streptomycesbikiniensis）。该菌株既能在YD培养基上异养生长,也能在无机培养基上自养生长,异养生长速率(Vmax为0.39mg/L\5d)明显高于自养生长速率（Vmax为0.22mg/L.d）。异养生长时,氨氮主要用于合成细胞物质;自养生长时,部分氨氮用于合成细胞物质,部分氨氮转化成亚硝酸盐。在无机培养基上自养生长时,最适氨浓度为118mgN/L。最适生长pH值为9.36,最适氨氧化pH值为9.29。最适生长温度为31℃,最适氨氧化温度为40.6℃。提高溶解氧浓度有利于该菌株生长和氨氧化,菌体生长对溶解氧浓度的敏感性高于氨氧化。     

Streptomyces rimosus M4018 中氧化应激转录抑制因子Rex的克隆表达及与rex 操纵子的体外结合活性

【目的】为了研究龟裂链霉菌Streptomyces rimosus M4018中的rex基因对自身rex operator(ROP)的调控机制。【方法】根据天蓝色链霉菌Streptomyces coelicolor A3(2)中rex基因的同源序列设计引物进行PCR,从S.rimosus M4018中获得其rex基因(Sr-rex)。同时,通过染色体步移的方法,获得其上游的ROP序列。采用体外凝胶迁移的方法,分析了Sr-Rex对ROP的调控作用。【结果】获取的Sr-rex基因核苷酸序列长度为846 bp,预测的编码氨基酸序列与S.coelicolor A3(2)中Rex的同源性为84%,获得GenBank登录号:GQ849479。圆二色光谱显示Sr-Rex的结构以α螺旋和β折叠为主,与软件预测相符。凝胶迁移实验表明,Sr-Rex能与S.rimosus M4108中扩增到的ROP片段特异性结合。同时,以Rex:ROP的最小结合序列为基础,设计了一条22 bp的单链DNA片段,和Sr-Rex的最大结合摩尔浓度比约为5:1。高浓度的NADH抑制两者的结合活性,而NAD+对结合没有影响。【结论】在S.rimosus M4108中,Rex是通过响应胞内NAD(H)水平的方式来调控ROP的表达的。     

Molecular cloning and functional characterization of an ATP-binding cassette transporter OtrC from Streptomyces rimosus

ABSTRACT: BACKGROUND: The otrC gene of Streptomyces rimosus was previously annotated as an oxytetracycline (OTC) resistance protein. However, the amino acid sequence analysis of OtrC shows that it is a putative ATP-binding cassette (ABC) transporter with multidrug resistance function. To our knowledge, none of the ABC transporters in S. rimosus have yet been characterized. In this study, we aimed to characterize the multidrug exporter function of OtrC and evaluate its relevancy to OTC production. RESULTS: In order to investigate OtrC's function, otrC is cloned and expressed in E. coli The exporter function of OtrC was identified by ATPase activity determination and ethidium bromide efflux assays. Also, the susceptibilities of OtrC-overexpressing cells to several structurally unrelated drugs were compared with those of OtrC-non-expressing cells by minimal inhibitory concentration (MIC) assays, indicating that OtrC functions as a drug exporter with a broad range of drug specificities. The OTC production was enhanced by 1.6-fold in M4018 (P = 0.000877) and 1.4-fold in SR16 (P = 0.00973) duplication mutants, while it decreased to 80% in disruption mutants (P = 0.0182 and 0.0124 in M4018 and SR16, respectively). CONCLUSIONS: The results suggest that OtrC is an ABC transporter with multidrug resistance function, and plays an important role in self-protection by drug efflux mechanisms. This is the first report of such a protein in S. rimosus, and otrC could be a valuable target for genetic manipulation to improve the production of industrial antibiotics.     

N5-(1-carboxyethyl)-ornithine, a new amino acid from the intracellular pool of Streptococcus lactis.

Intracellular concentrations of amino acids were determined in cells of Streptococcus lactis 133 during growth in complex, spent, and chemically defined media. Glutamic and aspartic acids represented the major constituents of the amino acid pool. However, organisms grown in spent medium or in defined medium supplemented with ornithine also contained unusually high levels of two additional amino acids. One of these amino acids was ornithine. The second compound exhibited properties of a neutral amino acid by coelution with valine from the amino acid analyzer. The compound did not, however, comigrate with valine or any other standard amino acid by two-dimensional thin-layer chromatography. The unknown amino acid was purified by paper and thin-layer chromatography, and its molecular structure was determined by 1H and 13C nuclear magnetic resonance spectroscopy. This new amino acid was shown to be N5-(1-carboxyethyl)-ornithine. The 14C-labeled compound was formed by cells of S. lactis 133 during growth in spent medium or defined medium containing [14C]ornithine. Formation of the derivative by resting cells required ornithine and the presence of a metabolizable sugar. N5-(1-Carboxyethyl)-ornithine was synthesized chemically from both poly-S-ornithine and (2S)-N2-carbobenzyloxy-ornithine as a 1:1 mixture of two diastereomers. The physical and chemical properties of the amino acid purified from S. lactis 133 were identical to those of one of the synthetic diastereomers. The bis-N-trifluoroacetyl-di-n-butyl esters of the natural and synthetic compounds generated identical gas chromatography-mass spectrometry spectra. A mechanism is suggested for the in vivo synthesis of N5-(1-carboxyethyl)-ornithine, and the possible functions of this new amino acid are discussed.     

Effect of liquid culture requirements on antifungal antibiotic production by Streptomyces rimosus MY02

Streptomyces rimosus MY02 was isolated from a soil sample which was collected from the northeast of China. The effect of medium components (i.e. carbon and nitrogen sources) and other culture requirements (i.e. initial pH and temperature) on production of antifungal antibiotics by S. rimosus MY02 was investigated in our work. The best conditions for the strain MY02 in 250-ml Erlenmeyer flask, for example, initial pH, temperature, medium capacity, agitation rate, seed age, inoculum size and growth period, were 6.0, 28 degrees C, 50 ml, 180 rpm, 4 days, 10% (v/v) and 120 h, respectively. Components and dosage of the medium, which effect antibiotic production, were determined by uniform design combined with regression analysis; meanwhile, a regression model was established. The components and dosage of the best medium were starch, 53.313 g; defatted peanut powder, 9.376 g; (NH(4))(2)SO(4), 6.244 g; and NaCl, 5.836 g; in 1l of distilled water. Residual values obtained between the observed values by experiments and predicted values by the model are very low, and this result showed that the experimental results were well in consistence with the calculation results via the model. The antifungal antibiotic production by S. rimosus MY02 was improved by optimization of the components and culture requirements. The diameter of inhibition zone of the culture supernatant from S. rimosus MY02 against Fusarium oxysporium f sp. cucumarinum was 33.19 mm.     

Optimum conditions for L-glutaminase production by actinomycete strain isolated from estuarine fish, Chanos chanos (Forskal, 1775)

Actinomycetes were isolated from skin, gills and gut contents of estuarine fish. Chanos chanos using Kuster's agar medium. Out of 20 strains tested, the strain LG-10 which was tentatively identified as Streptomyces rimosus showed L-glutaminase activity. Optimum production of L-glutaminase enzyme (17.51 IU/ml) was observed after 96 h of incubation at 27 degrees C, pH 9 and glucose and malt extract as carbon and nitrogen sources, respectively. The present study indicated scope for the use of S. rimosus as an ideal organism for the industrial production of extracellular L-glutaminase.     

Isolation and pure culture of a freshwater magnetic spirillum in chemically defined medium.

A bipolarly flagellated magnetotactic spirillum containing intracellular chains of single domain-sized magnetite crystals was isolated by applying a magnetic field to sediments from a freshwater swamp. The organism was cultured in a chemically defined medium containing ferric quinate and succinate as sources of iron and carbon, respectively. Nonmagnetic variants of this isolate were maintained in chemically defined medium lacking ferric quinate. In contrast to magnetic cells, these had less iron and lacked measurable magnetic remanence and the intracytoplasmic crystals. In other respects, including moles percent guanine plus cytosine content, growth characteristics, nutrition, and physiology, the two types were similar. The isolate reduced nitrate without accumulating nitrite and produced ammonia during growth. Nitrate or ammonium ions served as a nitrogen source. The organism was microaerophilic and did not grow anaerobically with nitrate in the medium. In chemically defined medium, cells synthesized magnetite only if the initial O2 concentration in the atmosphere of sealed cultures was 6% (vol/vol) or less.     

Factors affecting aflatoxin production by Aspergillus parasiticus in a chemically defined medium

The optimum levels of sucrose, (NH4)2SO4, MgSO4, KH2PO4 and ZnSO4 for aflatoxin production in a chemically defined medium have been established. The last two were found to be essential for fungal growth and aflatoxin production. The effect of various carbon sources on aflatoxin production was tested using the defined medium. Asparagine was found to be essential for aflatoxin production. Very little aflatoxin was produced in the absence of asparagine with any of the other inorganic nitrogen sources tested. Supplementation with yeast extract, Casamino acids, Casitone and peptone increased the aflatoxin yield, but omission of asparagine led to decreased aflatoxin yields even when complex nitrogen sources were present. Asparagine could be replaced by aspartic acid or alanine.