Development of the siphonous green alga Penicillus and the Espera state*

The thallus of Penicillus is composed of two filament types: axial filaments of indeterminate growth and laterals of determinate growth. In vegetative reproduction new plants arise from horizontal rhizoids. Four stages can be distinguished in development. In the primordium stage the tip of a rhizoid swells and forms a primordium. In the germling stage ascending and descending axial filaments arise from the primordium, the former grow into a fascicle and give rise to lateral saccate branches, each of which forms an ascending and a descending arm and branches further into rhizoid-like branchlets. Together these structures constitute the foundation of the stipe. At the same time the descending axial filaments elongate and become main rhizoidal filaments with lateral rhizoidal branchlets. In the early juvenile stage the stipe is formed. The elongating ascending axial filaments form a medulla while their laterals produce a cortex. In the late juvenile stage the axial filaments form the capitulum. The Espera state of Penicillus lacks a stipe since the ascending axial filaments do not join in a fascicle. Espera has been grown in laboratory cultures from Penicillus plants collected in the Caribbean region and also been found uncommonly in nature in this area. This state may be a response to environmental stress. The flattening of thalli and their orientation perpendicular to the direction of waves are discussed. A comparison of Penicillus and Codium indicates that at least two types of development exist in multiaxial Eusiphoniidae.     

The history of cereals in the region of the former Duchy of Swabia (Herzogtum Schwaben) from the Roman to the Post-medieval period: results of archaeobotanical research

Archaeobotanical results from the investigations of cereal finds in southwestern Germany and northern Switzerland have been mapped. Seven phases are distinguished, from Roman to early modern (Post-medieval). Methodological problems are discussed concerning sampling, identification, preservation, type of site, feature and assemblage, which influence the representation of the results. The main results are as follows. In the Roman period, Triticum spelta was the main crop, except in the upper Rhine valley (Oberrheinebene) where T. aestivum was more abundant. In the Migration period and Early Medieval period several crops are of similar importance. The reason was a rather simple economic system, a subsistence economy for each village, and perhaps cereal and grassland rotation (Feld-Gras-Wirtschaft). In the High Medieval period, Secale cereale was the dominant grain in the northern part of the region up to the Danube (Donau). In Switzerland, T. spelta dominated. In the landscape in between, from Lake Constance (Bodensee) to the upper Neckar valley, there was a mixture of both. These rather clear spectra, commonly dominated by one cereal species, express the changed economic system: the three field system (Dreifelderwirtschaft) and an increasing role of the market economy. Even in the Late Medieval and Post-medieval periods S. cereale and T. spelta remained the main crops. The present dominance of T. aestivum and Hordeum vulgare is a very recent development, less than a century old. The less important cereals, T. monococcum and Panicum miliaceum, occur regularly until Post-medieval times. T. dicoccum was very rare in this region from the Roman period onwards.     

Morphology and function of the reproductive system of representatives of the genus Uca

The morphology of the reproductive organs of three species of fiddler crabs, Uca ecuadoriensis, Uca c.f. forcipata, and Uca tangeri were investigated to subsequently produce a model of their mode of operation. Vulva, vagina, and spermatheca in females, and the first and second gonopods in males were examined by applying histological techniques and electron microscopy. In all three species, vulva and vagina conform to the concave type, and the spermatheca complies with the ventral type. The tissue of the oviduct orifice is enlarged and bulges into the lumen of the spermatheca. Differences between the three species are apparent in the organization of the spermatheca, especially in the distribution and structure of glandular epithelium: In U. ecuadoriensis and U. c.f. forcipata the largest proportion of the spermathecal wall is lined with cuticle and only a small area consists of glandular epithelium, while in U. tangeri almost all of the lining is glandular. Furthermore, the glandular epithelia of the species differ in their histology and ultrastructure: In U. ecuadoriensis it is tubular and multilayered, while in U. c.f. forcipata it is mono‐layered. U. tangeri finally has both forms of this tissue. In the males, the terminal segments of the first gonopod exhibit a tight fit to female organs and narrow, tightly sealed sperm channels. These features suggest a tendency towards minimizing loss of fluids, which can be interpreted as an adaptation to mating on land. The tight fit of male gonopod and female opening seem to be protection from interbreeding, which points toward a strong sexual selection. In the terrestrial environment, these originally aquatic organisms experience serious competition for resources; therefore there is pressure on successful reproduction. According to the current results a model of the process of fertilization and egg‐laying involving the investigated organs was generated. J. Morphol., 2010. © 2010 Wiley‐Liss, Inc.     

Endopolyploidy and structures of the nuclei in the endosperm of theCucurbitaceae

Summary In the endosperm ofEchinocystis lobata the endopolyploid nuclei show structural changes of chromocentres typical of the process of endomitosis in Angiosperms.The cytological differentiation of the endosperm proper and the chalazal haustorium in three further representatives of theCucurbitaceae: Sicyos angulata, Cyclanthera pedata andCitrullus colocynthis is also connected with endomitotic polyploidisation. The nuclei of the endosperm proper attain in the different species different levels of polyploidy, 384n, as a maximum. In the nuclei of the chalazal haustorium the degree of polyploidy is lower (as a maximum 24n).The structure of polyploid nuclei which did not undergo postendomitotic mitoses shows some differences in the species studied in the course of the present work.Sicyos angulata has prochromosomic diploid nuclei, whereas those ofCitrullus colocynthis andCyclanthera pedata can be assigned to chromomeric nuclei with a dense structure. Endopolyploid nuclei of all three species studied are characterized by the occurence of compact chromocentres of different size; besides in some nuclei ofSicyos angulata andCyclanthera pedata the chromocentres within the resting nucleus reveal their chromomere structure. In addition, inCitrullus colocynthis nuclei with numerous thin threads of various degrees of spiralisation have been observed. — In all three species the endopolyploid nuclei after mitotic divisions have notably higher numbers of nucleoli and small chromocentres.Dedicated to Professor L.Geitler on the occasion of his 70th birthday.     

Nutrient content of the aquatic macrophytesElodea canadensis andCeratophyllum in the course of the year

Summary In Lake Vechten, a sandpit near the city of Utrecht (The Netherlands), the submerged macrophyte vegetation is dominated by two species, namelyCeratophyllum demersum andElodea canadensis. In the course of the year both species are able to develop two distinct forms: the normal vegetative form in summer, the dormant form in winter.Elodea is anchored to the substrate by roots,Ceratophyllum by modified leaves, called rhizoids by GLÜCK (1906, 1911). Both species form distinct zones. The depth at which the plants occur abundantly is 0 to 3 m in the case ofElodea and from 3 to 5 forCeratophyllum.     

Characterisation of the laccase-encoding gene abr2 of the dihydroxynaphthalene-like melanin gene cluster of Aspergillus fumigatus

Aspergillus fumigatus is an important pathogen of the immunocompromised host. Previously, it was shown that the polyketide synthase encoded by the pksP (alb1) gene represents a virulence determinant. pksP is part of a gene cluster involved in dihydroxynaphthalene (DHN)-like melanin biosynthesis. Because a putative laccase-encoding gene (abr2) is also part of the cluster and a laccase was found to represent a virulence factor in Cryptococcus neoformans, here, the Abr2 laccase was characterised. Deletion of the abr2 gene changed the gray-green conidial pigment to a brown color and the ornamentation of conidia was reduced compared with wild-type conidia. In contrast to the white pksP mutant, the susceptibility of the Δabr2 mutant against reactive oxygen species (ROS) was not increased, suggesting that the intermediate of DHN-like melanin produced up to the step catalysed by Abr2 already possesses ROS scavenging activity. In an intranasal mouse infection model, the Δabr2 mutant strain showed no reduction in virulence compared with the wild type. In the Δabr2 mutant, overall laccase activity was reduced only during sporulation, but not during vegetative growth. An abr2p-lacZ gene fusion was expressed during sporulation, but not during vegetative growth confirming the pattern of laccase activity due to Abr2.     

Histological study and immunohistochemical location of cytoskeletal proteins in the testis and epididymis of the three species of lizards of the family Leiosauridae (Reptilia: Squamata)

The objective of the study was to histologically describe the structure of the testis and epididymis, identifying the GAGs in them. Furthermore, the distribution of smooth muscle alpha-actin, desmin, and vimentin is described of E. bilineatus, E. perditus, and U. vautieri, through immunohistochemical method. Two adult males of each species of the lizards were collected in southeastern Brazil. In the testicular albuginea, the presence of neutral glycoproteins was detected. In E. bilineatus, the epididymal duct epithelium is simple, composed of secretory cells, cylindrical in shape and acidophilic cytoplasm. In the testis of the three lizards there was a positive immunolocation accentuated for α-SMA in the dense connective tissue of the tunica albuginea. A moderate reaction was observed in the connective tissue albuginous and in the layer of smooth muscle fibers in a circumferential arrangement of the epididymal duct. The immunolocation for desmin was accentuated in the fibers of the testicular albuginea of E. bilineatus, while in U. vautier and E. perditus was moderate. In the epididymis, only in E. perditus and E. bilineatus positive immunoreaction was verified. In the three lizards there were no observations of immunostaining for vimentin with the antibody utilized.     

On the diploid state of the fish order Ostariophysi

Our previous study on the order Ostariophysi was limited to members of the family Cyprinidae, suborder Cyprinidea. It was shown that the carp and the goldfish with 104 chromosomes and a DNA value of 50% that of mammals are tetraploid, as the diploid species of this family has 50–52 chromosomes and a 25% DNA value. In order to obtain some idea as to how many changes in DNA values and chromosome complements have occurred among diploid members of Ostariophysi, the study was expanded to cover members of the families Cobitidae and Characinidae of the suborder Cyprinidea as well as members of the families Ictarulidae and Loricaridae of the suborder Siluroidea. Diploid chromosome numbers varied from 50 to 98 and DNA values from 27–51% that of mammals. Apparently, diploid members of Ostariophysi underwent extensive chromosomal rearrangements as well as steady increases in DNA contents by regional duplication of chromosomal segments.In Duarte, this work was supported by a grant CA-05138 from the Nationa Cancer Institute, U.S. Public Health Service, and in part by a research fund established in honor of General James H. Doolittle. Contribution No. 21-67, Department of Biology. In Northwood, this project was supported by the British Empire Cancer Campaign.Fellow of the Institute for Advanced Learning of the City of Hope Medical Center.     

Preying at the edge of the sea: the nemertine Tetrastemma melanocephalum and its amphipod prey on high intertidal sandflats

In the European Wadden Sea, the nemertine Tetrastemma melanocephalumoccurs together with its prey, the amphipod Corophium arenarium, in the upper intertidal zone. T. melanocephalumleaves the sediment when the tide has receded and captures C. arenarium in its U-shaped burrow. Highest abundances of T. melanocephalumon the sediment surface were found on summer evenings, 2–4 h after high tide, when just a thin film of water was left on the flats. Laboratory Y-maze experiments indicated that gradients of substances produced by C. arenarium in this film of water play a role in tracking the prey. In the field, T. melanocephalum appeared in significantly higher numbers on experimental high density patches of C. arenarium. The amphipod in turn is able to recognize the nemertine. In aquarium experiments, significantly more amphipods escaped from the sediment into the water column when the predator was present. In the field, both predator and prey showed a high mobility by drifting in tidal waters. Benthic abundance maxima of T. melanocephalum and C. arenariumusually did not coincide spatially. It is assumed that the nemertines avoid tidal flats that dry out quickly leaving too little time for prey capture. T. melanocephalum is not able to dig into the sediment, but lives in burrows of Nereis diversicolor. The abundance of this polychaete was inversely related to C. arenarium, presenting a dilemma for T. melanocephalum: the spatial overlap of food and accommodation was rather small.     

Screening of bacteria of the genus Bacillus for the control of the plant-pathogenic fungus Macrophomina phaseolina

This study evaluated the efficiency of 19 Bacillus isolates, obtained from the rhizosphere and rhizoplane of wild and cultivated castor bean plants, to control the pathogenic fungus Macrophomina phaseolina. Using in vitro assays, we examined the antifungal effects of volatile and non-volatile compounds, the production of siderophores and the activity of chitinase in these isolates. In vivo experiments were conducted to determine the potential of the Bacillus isolates to colonise castor bean plant roots and to control the fungus. In general, results showed that isolates from wild castor bean, compared with isolates from cultivated castor bean, were more efficient producers of antifungal compounds, better colonisers of plant roots and more effective protectors of plant seedlings against infection with M. phaseolina. Altogether, isolate RP 5, originating from the rhizoplane of wild castor bean, was the most promising candidate for future evaluation as a biological control agent of M. phaseolina.     

Glutamine synthetase gene expression during the regeneration of the annelid Enchytraeus japonensis

Enchytraeus japonensis is a highly regenerative oligochaete annelid that can regenerate a complete individual from a small body fragment in 4–5 days. In our previous study, we performed complementary deoxyribonucleic acid subtraction cloning to isolate genes that are upregulated during E. japonensis regeneration and identified glutamine synthetase (gs) as one of the most abundantly expressed genes during this process. In the present study, we show that the full-length sequence of E. japonensis glutamine synthetase (EjGS), which is the first reported annelid glutamine synthetase, is highly similar to other known class II glutamine synthetases. EjGS shows a 61–71% overall amino acid sequence identity with its counterparts in various other animal species, including Drosophila and mouse. We performed detailed expression analysis by in situ hybridization and reveal that strong gs expression occurs in the blastemal regions of regenerating E. japonensis soon after amputation. gs expression was detectable at the cell layer covering the wound and was found to persist in the epidermal cells during the formation and elongation of the blastema. Furthermore, in the elongated blastema, gs expression was detectable also in the presumptive regions of the brain, ventral nerve cord, and stomodeum. In the fully formed intact head, gs expression was also evident in the prostomium, brain, the anterior end of the ventral nerve cord, the epithelium of buccal and pharyngeal cavities, the pharyngeal pad, and in the esophageal appendages. In intact E. japonensis tails, gs expression was found in the growth zone in actively growing worms but not in full-grown individuals. In the nonblastemal regions of regenerating fragments and in intact worms, gs expression was also detected in the nephridia, chloragocytes, gut epithelium, epidermis, spermatids, and oocytes. These results suggest that EjGS may play roles in regeneration, nerve function, cell proliferation, nitrogenous waste excretion, macromolecule synthesis, and gametogenesis.     

A new Illumina MiSeq high-throughput sequencing-based method for evaluating the composition of the Bacteroides community in the intestine using the rpsD gene sequence

Bacteroides is a bacterial genus that is known to closely interact with the host. The potential role of this genus is associated with its ecological status and distribution in the intestine. However, the current 16S V3–V4 region sequencing method can only detect the abundance of this genus, revealing a need for a novel sequencing method that can elucidate the composition of Bacteroides in the human gut microbiota. In this study, a core gene, rpsD, was selected as a template for the design of a Bacteroides-specific primer set. We used this primer set to develop a novel assay based on the Illumina MiSeq sequencing platform that enabled an accurate assessment of the Bacteroides compositions in complex samples. Known amounts of genomic DNA from 10 Bacteroides species were mixed with a complex sample and used to evaluate the performance and detection limit of our assay. The results were highly consistent with those of direct sequencing with a low Bacteroides DNA detection threshold (0.01 ng), supporting the reliability of our assay. In addition, the assay could detect all the known Bacteroides species within the faecal sample. In summary, we provide a sensitive and specific approach to determining the Bacteroides species in complex samples.     

Effect of Gap Width and Turf Type on the Establishment of the Australian Forb Bulbine bulbosa

This study investigates the influence of gap width and turf type on the growth of planted seedlings of the Australian forb Bulbine bulbosa (bulbine lily) and subsequent recruitment of this species from self-sown seed. In a low-productivity turf of Danthonia setacea (bristly wallaby grass), planted Bulbine seedlings established satisfactorily in all gaps 50 mm wide or larger. In highly productive turfs of Festuca arundinacea (tall fescue) successful, establishment and growth of planted seedlings required a competition-free gap more than 200 mm wide. Successful recruitment of self-sown Bulbine seedlings was observed in all gap widths in Danthonia turfs. In Festuca, however, seedling recruitment was low, irrespective of gap width. The results are related to establishing Bulbine bulbosa in habitat reconstruction programs in southeastern Australia.     

Identification of the human homolog of the imprinted mouse Air non-coding RNA

Genomic imprinting is widely conserved amongst placental mammals. Imprinted expression of IGF2R, however, differs between mice and humans. In mice, Igf2r imprinted expression is seen in all fetal and adult tissues. In humans, adult tissues lack IGF2R imprinted expression, but it is found in fetal tissues and Wilms' tumors where it is polymorphic and only seen in a small proportion of tested samples. Mouse Igf2r imprinted expression is controlled by the Air (Airn) ncRNA whose promoter lies in an intronic maternally-methylated CpG island. The human IGF2R gene carries a homologous intronic maternally-methylated CpG island of unknown function. Here, we use transfection and transgenic studies to show that the human IGF2R intronic CpG island is a ncRNA promoter. We also identify the same ncRNA at the endogenous human locus in 16–40% of Wilms' tumors. Thus, the human IGF2R gene shows evolutionary conservation of key features that control imprinted expression in the mouse.     

Comparative ultrastructure of the terminal portions of the male copulatory apparatus in Planorbidae (Gastropoda: Pulmonata)

Terminal portions of the male copulatory apparatus of Planorbis planorbis, Segmentina oelandica, and Anisus vortex were studied using whole-mount preparations, serial semi-thin sections, and transmission electron microscopy. In the latter species, stylet formation was investigated at several stages of postembryonic development. Organization of the penial distal portion in the species studied varies greatly. In P. planorbis, the distal end of the penis lacks developed papillae and is armed with a stylet built up of the covering epithelial cells of the penis proper. In A. vortex, the stylet is formed by the secretory activity of the middle cells of the distal portion of the penis. To the time of maturation, the cells encompassing the stylet are broken down exposing its solid chitinous structure and characteristic shape. In S. oelandica, the distal end of the penis bears the long probably flexible papilla with the characteristics of an internal ‘skeleton,’ organized as a line of connective tissue cells and a system of hydrocoelic cavities.     

Aspects of the study of the life cycles of Antarctic copepods

Different approaches to the study of life cycle strategies of Antarctic copepods are described in an attempt to shed new light on our present knowledge. To date, most studies were carried out on abundance, horizontal and vertical distribution and stage composition during different seasons and in various regions. Hence, the seasonal pictures had to be compiled from different years and sampling regions. The physiological method includes measurements on e.g. egg production, feeding, respiration and excretion rates, C:N and O:N ratios, lipid and protein contents. However, both physiological and biochemical data are still rare. Results of field observations are given in this paper for investigations conducted within the last 15 years in the eastern Weddell Sea, while data of physiological parameters are based on a broader geographical region. In the eastern Weddell Sea, eight copepod species account for about 95% of copepod abundance and for more than 80% of copepod biomass. Within the calanoids, the small species Microcalanus pygmaeus dominates by numbers with 66%, while the large species Calanoides acutus and Calanus propinquus comprise together 52% of the biomass. Species abundance is lowest in winter and highest in summer/autumn, however, seasonal changes in the abundance of M. pygmaeus are small and this species occurs in similar quantities throughout the year. All copepod species show a distinct seasonal vertical distribution pattern and they occur in upper water layers in summer, in contrast to the other seasons. However, the depth layers of maximum concentration differ between species. The ontogenetic vertical migration is most pronounced in C. acutus and relatively weak in C. propinquus. The age structure also shows seasonal differences with the youngest population observed in summer for C. acutus, C. propinquus, Ctenocalanus citer or autumn for Metridia gerlachei, whereas the M. pygmaeus population is oldest during summer. The youngest copepodite stage and the males are not always present in C. acutus and C. propinquus. In contrast, all developmental stages and both sexes occur throughout the year in M. gerlachei, M. pygmaeus and C. citer. Gonad maturation in the dominant calanoid species proceeds well before the onset of phytoplankton production in the eastern Weddell Sea. However, the highest portion of females with ripe gonads and hence highest egg production rates coincide with the productive period in spring and summer. In autumn, ovaries of the three larger species C. acutus, C. propinquus and M. gerlacheiare all spent. In contrast, the percentage of ripe females of the two smaller species, C. citer and M. pygmaeus, stays high in autumn. Egg production rates are highly variable within one region and species. Many copepods accumulate large depots of lipid, mainly wax esters. In contrast, five species (C. propinquus, C. simillimus, Euchirella rostromagna, Stephos longipes and Paralabidocera antarctica) almost exclusively synthesise triacylglycerols and not wax esters. The lipid content exhibits distinct seasonal patterns, and is highest in autumn. A seasonal difference is also obvious in metabolic activities with lowest rates during the dark season. The adaptation to the pronounced seasonality in the Southern Ocean differs greatly between copepod species, and most Antarctic copepods stay active during the dark season. Calanoides acutus seems to be the only true diapause species. Calculations of summer developmental rates and winter mortality rates of the large species C. acutus and C. propinquus suggest that both species have a 1-year life cycle with few females overwintering and probably spawning a second time. In contrast, a 2-year life cycle is more likely in R. gigas. However, life cycle durations of all species studied are still uncertain and regional differences are very probable.     

Organization of the variable region of the immunoglobulin heavy-chain gene locus of the rat

We have mapped and annotated the variable region of the immunoglobulin heavy (IGH) gene locus of the Brown Norway (BN) rat (assembly V3.4; Rat Genomic Sequence Consortium). In addition to known variable region genes, we found 12 novel previously unidentified functional IGHV genes and 1 novel functional IGHD gene. In total, the variable region of the rat IGH locus is composed of at least 353 unique IGHV genes, 21 IGHD genes, and 5 IGHJ genes, of which 131, 14, and 4 are potentially functional genes, respectively. Of all species studied so far, the rat seems to have the highest number of functional IGHV genes in the genome. Rat IGHV genes can be classified into 13 IGHV families based on nucleotide sequence identity. The variable region of the BN rat spans a total length of approximately 4.9 Mb and is organized in a typical translocon organization. Like the mouse, members of the various IGHV gene families are more or less grouped together on the genome, albeit some members of IGHV gene families are found intermingled with each other. In the rat, the largest IGHV gene families are IGHV1, IGHV2, and IGHV5. The overall conclusion is that the genomic organization of the variable region of the rat IGH locus is strikingly similar to that of the mouse, illustrating the close evolutionary relationship between these two species.     

Comparative embryology of threeGentianaceae species from the Central Caucasus and the European Alps

A comparative investigation was carried out on the ovule and seed development of three mountain species ofGentianaceae, the perennial speciesGentiana pyrenaica, and the two short-lived monocarpic speciesGentianella caucasea andG. germanica. In all three species most embryological characters conform to those generally found in the family of theGentianaceae. In some features, however,G. pyrenaica and the twoGentianella species differ from each other. InG. pyrenaica the ovule is anatropous, the integument 8–10 layered and the three reduced antipodals degenerate soon after fertilization. In contrast,G. caucasea andG. germanica form a hemitropous ovule, a 4–5 layered integument and up to 16 antipodal cells by secondary multiplication. All three species exhibit differences in synchronization between embryogenesis and endosperm development. Functional relations between the antipodal structure and the dynamics of seed development of the investigated species are postulated.