Bag-of-words representation for biomedical time series classification

Automatic analysis of biomedical time series such as electroencephalogram (EEG) and electrocardiographic (ECG) signals has attracted great interest in the community of biomedical engineering due to its important applications in medicine. In this work, a simple yet effective bag-of-words representation that is originally developed for text document analysis is extended for biomedical time series representation. In particular, similar to the bag-of-words model used in text document domain, the proposed method treats a time series as a text document and extracts local segments from the time series as words. The biomedical time series is then represented as a histogram of codewords, each entry of which is the count of a codeword appeared in the time series. Although the temporal order of the local segments is ignored, the bag-of-words representation is able to capture high-level structural information because both local and global structural information are well utilized. The performance of the bag-of-words model is validated on three datasets extracted from real EEG and ECG signals. The experimental results demonstrate that the proposed method is not only insensitive to parameters of the bag-of-words model such as local segment length and codebook size, but also robust to noise.     

Malleability and Pliability of Silk‐Derived Electrodes for Efficient Deformable Perovskite Solar Cells

For the fabrication of deformable electronic devices, electrodes that are robust against repeated bending, twisting, stretching, folding, reversible plasticizing, and that maintain electrical conductivity, and so on, are required. Malleable and pliable silk‐derived electrodes are fabricated to enable the shape deformation of perovskite solar cells. Moisture‐driven silk‐derived electrodes show reversible plasticization with malleability and pliability, realizing diverse deformation from simple operations (including bending, folding, stretching, etc.) to complicated structures (including flower, bowknot, and paper crane). It is worth noting that the silk‐derived electrodes maintain electrical conductivity (15.8 Ω sq^?1) compared to their initial value (15 Ω sq^?1) even after suffering from reversible mechanical plasticization of complicated structures. Deformable perovskite solar cells are fabricated with the silk‐derived electrodes and achieve a power conversion efficiency of 10.40%. The devices maintain 92% of the initial efficiency after 1000 bends at a curvature radius of 2.5 mm. The power does not decline at 50% strain and keeps more than 60% of the initial value after stretching for 50 cycles. Malleability and pliability of silk‐derived electrodes benefit the realization of stretchable perovskite solar cells and deformable electronic devices.     

Analysis of the introduction and removal of glycerol in rabbit kidneys using a Krogh cylinder model

In 1982, Rubinsky and Cravalho described a Krogh cylinder model for the analysis of cryoprotectant transport in a perfused organ. By application of the Kedem-Katchalsky equations, changes in tissue volume caused by movements of water and solute were used to predict changes in capillary radius (Cryobiology 19, 70-82, 1982). We have now measured the changes in vascular resistance that are produced when sucrose or glycerol is introduced into the perfusate flowing through rabbit kidneys at 10 degrees C, and have analyzed these data by means of the Rubinsky-Cravalho semiempirical model. The sucrose data provided an estimate of hydraulic conductivity and the dimensions of the Krogh tissue units. Three rates of addition of glycerol, 10, 30, and 90 mM/min to a final concentration of 3 M, were studied. The vascular resistance fell to approximately 40% of its initial value (radius approximately 128% of initial value) with all three rates of addition, and then returned toward its normal value while the glycerol concentration was still increasing. This behavior could be explained either by a sudden change in solute permeability at that capillary radius, or by an inverse dependence of reflection coefficient upon solute concentration. Evidence is presented that favors the latter interpretation. The best fits for the apparent hydraulic conductivity and apparent solute permeability for glycerol are 1 X 10(-6) cm/sec atm and 6 X 10(-8) cm/sec, respectively, with the reflection coefficient falling from 1.0 when the glycerol concentration is zero to 0.1 when it is 3 M. The model is used to predict tissue concentrations of glycerol throughout each experiment.     

Spectral turbulence measuring as feature extraction method from EEG on affective computing

In biomedical and psychological applications dealing with EEG, a suitable selection of the most relevant electrodes is useful for lightening the data acquisition and facilitating the signal processing. Therefore, an efficient method for extracting and selecting features from EEG channels is desirable. Classification methods are more and more applied for obtaining important conclusions from diverse psychological processes, and specifically for emotional processing. In this work, an original and straightforward method, inspired by the spectral turbulence (ST) measure from electrocardiogram and the support vector machine-recursive feature elimination (SVM-RFE) algorithm, is proposed for classifying EEG signals. The goal of this study is to introduce the ST concept in applications of artificial intelligence related to cognitive processes and to determine the best EEG channels for distinguishing between two different experimental conditions. By means of this method, the left temporal region of the brain has revealed to be greatly involved in the affective valence processing elicited by visual stimuli.     

Effect of glycerol on the capacity and conductivity of lipid bilayer membranes

It is shown that glycerol addition to one side of BLM containing cholesterol leads to a significant decrease of its capacity, and the decrease rate is in indirect proportion to glycerol concentration. Washing out or addition of glycerol to another side results in a full or partial reconstitution of the capacity. The effect of glycerol on the BLM conductivity is manifested in its increase for membranes having specific conductivity above 2.10(-7) Om-1 X cm2. The peculiarity of glycerol is manifested in the fact that during definite period of time (20 +/- 30 min) the membrane is under "stress" condition with the characteristic current fluctuations, which may be compared with its medium meaning. Such condition is preserved up to the moment of BLM rupture. It is supposed that such effects are due to the big-scale reconstructions of membrane structure under the influence of glycerol.     

神经工程与脑-机接口

神经工程是近年来在生物医学工程领域备受关注的学科发展新方向。它运用神经科学和工程学的方法来分析神经功能并为神经功能缺失与紊乱的修复提供新的解决问题的方案;而脑-机接口则是当前神经工程领域中最活跃的研究方向之一。脑-机接口是在脑与计算机或其他外部设备之间建立的直接的通信和交流通道。在脑-机接口系统中,具有特定模式的脑信号携带着受试者希望表达的意愿,计算机将接收到的脑信号转换成相应的控制命令,于是那些有运动障碍的残疾人就可以利用脑-机接口系统来实现与外界的交流与对外部设备的控制。在基于脑电信号的脑-机接口系统中,受试者产生的脑信号大致可以分为内源性（endogenous）和外源性（exogenous）两类。其中外源性的成分主要取决于外部物理刺激（视觉、听觉或触觉）的参数而与认知行为无关;而内源性成分则主要由认知行为产生而与外部的物理刺激无关。在许多情况下,脑－机接口中的瞬态诱发电位通常都同时包含着内源性和外源性两种成分。寻找新的脑－机接口模式使之能显著提升记录脑电信号中的内源性与外源性成分在脑－机接口研究中具有重要意义。本文中将介绍一种基于运动起始时刻（motion—onset）的新的脑-机接口实验范式。本文的最后还探讨了脑－机接口未来发展的趋势与展望。     

Role of Caterpillar Silk Thread in Location of Host Pupae by the Parasitoid <Emphasis Type="Italic">Diadromus pulchellus</Emphasis>

Diadromus pulchellus is a solitary ichneumonid parasitoid. Its only known host is the pupa of Acrolepiopsis assectella, a specialist herbivore of Allium species. D. pulchellus females parasitize A. assectella pupae within 48 h after the caterpillars spin their cocoon and begin to pupate. Having observed that the cocoon produced by the leek moth caterpillar stimulates parasitoid egg-laying and that caterpillar leaves a silk thread, we studied the hypothesis that silk thread might be involved in host-finding by the parasitoid. Behavioral tests showed that when D. pulchellus females encounter a host silk thread, they change directions, follow the thread, and quickly locate the host. These findings show that pupal parasitoids can use signals produced by their hosts at the developmental instar preceding the one that they parasitize.     

Analyis of structure/property relationships in silkworm (Bombyx mori) and spider dragline (Nephila edulis) silks using Raman spectroscopy

The molecular deformation of both silkworm (Bombyx mori) and spider dragline (Nephila edulis) silks has been studied using a combination of mechanical deformation and Raman spectroscopy. The stress/strain curves for both kinds of silk showed elastic behavior followed by plastic deformation. It was found that both materials have well-defined Raman spectra and that some of the bands in the spectra shift to lower frequency under the action of tensile stress or strain. The band shift was linearly dependent upon stress for both types of silk fiber. This observation provides a unique insight into the effect of tensile deformation upon molecular structure and the relationship between structure and mechanical properties. Two similar bands in the Raman spectra of both types of silk in the region of 1000-1300 cm(-1) had significant identical rates of Raman band shift of about 7 cm(-1)/GPa and 14 cm(-1)/GPa demonstrating the similarity between the silk fibers from two different animals.     

Biosynthesis and cocoon-export of a recombinant globular protein in transgenic silkworms

A gene construct was made by fusing the coding sequence of the red fluorescent protein (DsRed) to the exon 2 of the fibrohexamerin gene (fhx), that encodes a subunit of fibroin, the major silk protein of the silkworm Bombyx mori. The fusion gene was inserted into a piggyBac vector to establish a series of transgenic lines. The expression of the transgene was monitored during the course of larval life and was found restricted to the posterior silk gland cells as the endogenous fhx gene, in all the selected transgenic lines. The exogenous polypeptide was secreted into the lumen of the posterior silk gland together with fibroin, and further exported with the silk proteins as a foreign constituent of the cocoon fiber. The capacity of DsRed to emit fluorescence in the air-dried silk thread led to show that the recombinant protein was distributed over the whole length of the fiber. A remarkable property of the system lies in the localization of the globular protein at the periphery of the silk thread, allowing its rapid and easy recovery in aqueous solutions, without dissolving fibroin. The procedure represents a novel and promising strategy for the production of massive recombinant proteins of biomedical and pharmaceutical interest, with reduced cost.     

Combined EEG/MEG Can Outperform Single Modality EEG or MEG Source Reconstruction in Presurgical Epilepsy Diagnosis

We investigated two important means for improving source reconstruction in presurgical epilepsy diagnosis. The first investigation is about the optimal choice of the number of epileptic spikes in averaging to (1) sufficiently reduce the noise bias for an accurate determination of the center of gravity of the epileptic activity and (2) still get an estimation of the extent of the irritative zone. The second study focuses on the differences in single modality EEG (80-electrodes) or MEG (275-gradiometers) and especially on the benefits of combined EEG/MEG (EMEG) source analysis. Both investigations were validated with simultaneous stereo-EEG (sEEG) (167-contacts) and low-density EEG (ldEEG) (21-electrodes). To account for the different sensitivity profiles of EEG and MEG, we constructed a six-compartment finite element head model with anisotropic white matter conductivity, and calibrated the skull conductivity via somatosensory evoked responses. Our results show that, unlike single modality EEG or MEG, combined EMEG uses the complementary information of both modalities and thereby allows accurate source reconstructions also at early instants in time (epileptic spike onset), i.e., time points with low SNR, which are not yet subject to propagation and thus supposed to be closer to the origin of the epileptic activity. EMEG is furthermore able to reveal the propagation pathway at later time points in agreement with sEEG, while EEG or MEG alone reconstructed only parts of it. Subaveraging provides important and accurate information about both the center of gravity and the extent of the epileptogenic tissue that neither single nor grand-averaged spike localizations can supply.     

Canonical bicoherence analysis of dynamic EEG data

Bicoherence has been used in quantifying quadratic phase coupling (QPC) in electroencephalography (EEG) signals. However, for high-dimensional EEG signals, the calculations of traditional auto– and cross–bicoherences of signals from multiple electrodes are computationally very expensive. This has been compounded by the recognition of the non-stationary character of EEG signals. This paper introduces a new approach, the time-varying canonical bicoherence (CBC) by short-time weighted Fourier transforms, for analyzing QPC nonlinearities of dynamic EEG signals. This new method shows both computational efficiency and simple interpretation of estimated canonical bicoherences. The canonical bicoherence analysis of EEG records, during a human visual stimulus-driven cognitive process, put into evidence of quadratic phase couplings of Beta waves and Delta waves in the frontal regions.     

Design and development of low cost polyurethane biopolymer based on castor oil and glycerol for biomedical applications

In the current study, we present the synthesis of novel low cost bio‐polyurethane compositions with variable mechanical properties based on castor oil and glycerol for biomedical applications. A detailed investigation of the physicochemical properties of the polymer was carried out by using mechanical testing, ATR‐FTIR, and X‐ray photoelectron spectroscopy (XPS). Polymers were also tested in short term in‐vitro cell culture with human mesenchymal stem cells to evaluate their biocompatibility for potential applications as biomaterial. FTIR analysis confirmed the synthesis of castor oil and glycerol based PU polymers. FTIR also showed that the addition of glycerol as co‐polyol increases crosslinking within the polymer backbone hence enhancing the bulk mechanical properties of the polymer. XPS data showed that glycerol incorporation leads to an enrichment of oxidized organic species on the surface of the polymers. Preliminary investigation into in vitro biocompatibility showed that serum protein adsorption can be controlled by varying the glycerol content with polymer backbone. An alamar blue assay looking at the metabolic activity of the cells indicated that castor oil based PU and its variants containing glycerol are non‐toxic to the cells. This study opens an avenue for using low cost bio‐polyurethane based on castor oil and glycerol for biomedical applications.     

Hidden pattern discovery on event related potential EEG signals

EEG signals are important to capture brain disorders. They are useful for analyzing the cognitive activity of the brain and diagnosing types of seizure and potential mental health problems. The Event Related Potential can be measured through the EEG signal. However, it is always difficult to interpret due to its low amplitude and sensitivity to changes of the mental activity. In this paper, we propose a novel approach to incrementally detect the pattern of this kind of EEG signal. This approach successfully summarizes the whole stream of the EEG signal by finding the correlations across the electrodes and discriminates the signals corresponding to various tasks into different patterns. It is also able to detect the transition period between different EEG signals and identify the electrodes which contribute the most to these signals. The experimental results show that the proposed method allows the significant meaning of the EEG signal to be obtained from the extracted pattern.     

Biomimetic repeat protein derived from Xenopus tropicalis for fibrous scaffold fabrication

Collagen, silk, and elastin are the fibrous proteins consist of representative amino acid repeats. Because these proteins exhibited distinguishing mechanical properties, they have been utilized in diverse applications, such as fiber‐based sensors, filtration membranes, supporting materials, and tissue engineering scaffolds. Despite their infinite prevalence and potential, most studies have only focused on a few repeat proteins. In this work, the hypothetical protein with a repeat motif derived from the frog Xenopus tropicalis was obtained and characterized for its potential as a novel protein‐based material. The codon‐optimized recombinant frog repeat protein, referred to as ‘xetro’, was produced at a high rate in a bacterial system, and an acid extraction‐based purified xetro protein was successfully fabricated into microfibers and nanofibers using wet spinning and electrospinning, respectively. Specifically, the wet‐spun xetro microfibers demonstrated about 2‐ and 1.5‐fold higher tensile strength compared with synthetic polymer polylactic acid and cross‐linked collagen, respectively. In addition, the wet‐spun xetro microfibers showed about sevenfold greater stiffness than collagen. Therefore, the mass production potential and greater mechanical properties of the xetro fiber may result in these fibers becoming a new promising fiber‐based material for biomedical engineering. © 2015 Wiley Periodicals, Inc. Biopolymers 103: 659–664, 2015.     

Effects of modulated RF energy on the EEG of mammalian brains

The effects of modulated radio frequency fields on mammalian EEGs were investigated using acute and chronic irradiations at non-thermal level. The EEG signals were computer processed to obtain power spectra. Rabbits were exposed to the field for 2 h a day for 6 weeks at 1-10 MHz (15 Hz modulation) at the level of 0.5-1 kV/M. Silver electrodes placed on the skull surface were used for recording of the EEG. Usually they were removed immediately after initial recordings of the EEG and reinserted before the final and intermediate EEG recordings. With this arrangement, modulated RF fields produced a change in EEG patterns by enhancing the low frequency components and decreasing high frequency activities. On the other hand, acute irradiations did not produce noticeable changes in the EEG at the level of 0.5-1 kV/M (1-30 MHz, 60 Hz modulation) as long as the use of intracranial electrodes was avoided.     

Biomedical Implementation of Liquid Metal Ink as Drawable ECG Electrode and Skin Circuit

Background

Conventional ways of making bio-electrodes are generally complicated, expensive and unconformable. Here we describe for the first time the method of applying Ga-based liquid metal ink as drawable electrocardiogram (ECG) electrodes. Such material owns unique merits in both liquid phase conformability and high electrical conductivity, which provides flexible ways for making electrical circuits on skin surface and a prospective substitution of conventional rigid printed circuit boards (PCBs).

Methods

Fundamental measurements of impedance and polarization voltage of the liquid metal ink were carried out to evaluate its basic electrical properties. Conceptual experiments were performed to draw the alloy as bio-electrodes to acquire ECG signals from both rabbit and human via a wireless module developed on the mobile phone. Further, a typical electrical circuit was drawn in the palm with the ink to demonstrate its potential of implementing more sophisticated skin circuits.

Results

With an oxide concentration of 0.34%, the resistivity of the liquid metal ink was measured as 44.1 µΩ·cm with quite low reactance in the form of straight line. Its peak polarization voltage with the physiological saline was detected as −0.73 V. The quality of ECG wave detected from the liquid metal electrodes was found as good as that of conventional electrodes, from both rabbit and human experiments. In addition, the circuit drawn with the liquid metal ink in the palm also runs efficiently. When the loop was switched on, all the light emitting diodes (LEDs) were lit and emitted colorful lights.

Conclusions

The liquid metal ink promises unique printable electrical properties as both bio-electrodes and electrical wires. The implemented ECG measurement on biological surface and the successfully run skin circuit demonstrated the conformability and attachment of the liquid metal. The present method is expected to innovate future physiological measurement and biological circuit manufacturing technique in a large extent.     

Resilience of aquatic net‐spinning caddisfly silk structures to common global stressors

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Chest conduction properties and ECG equalization

In common practice of detecting and recording biomedical signals, it is often implicitly assumed that the propagation, through the whole circuit human body-electrodes recording devices, is frequency and voltage independent. As a consequence, clinicians are not aware that recorded signals do not correspond faithfully to the original electrical activity of organs under investigation. We have studied the transmission of electrical signals in human body at various voltages and frequencies to understand if and to which extent the most diffused stimulating and recording techniques used in medicine are affected by global body conduction properties. Our results show that, in order to obtain a more faithful detection of electrical activity produced or evoked by human organs (e.g. EGG, electromyography, etc.), it is convenient to 'equalize' recorded signals. To this purpose, two equalization techniques are proposed, based, respectively, on a simple hardware filtering during acquisition, or FFT post-processing of the acquired signals. As an application, we have studied the transmission of electrical signal in human chest and have compared equalized high frequency ECG signals with raw (original) recordings.     

Characterizations of glycerol plasticized-starch (GPS)/carbon black (CB) membranes prepared by melt extrusion and microwave radiation

As electrically conductive polymer composites, glycerol plasticized-starch (GPS)/carbon black (CB) membranes are respectively prepared by melt extrusion and microwave radiation. Scanning electron microscopy shows that the electrical conductance network of CB is formed in GPS/CB membranes, prepared by microwave radiation (GPS/CB-MR). However, the agglomerates of CB particles are isolated in GPS/CB membranes, prepared by melt extrusion (GPS/CB-ME). Fourier Transform Infrared (FTIR) spectroscopy reveals that CB and GPS matrix can form the interaction in GPS/CB membranes. According to Nicholais–Narkis models, the reinforcing effect of CB is more obvious in GPS/CB-MR membranes than in GPS/CB-ME membranes. GPS/CB-MR membranes exhibit a low electrical percolation threshold of 2.398 vol% CB loading and the conductivity of the membrane containing 4.236 vol% CB reaches 7.08 S/cm, while GPS/CB-ME membranes shows a very low conductivity of 10⁻⁸ S/cm at the high CB content. In addition, GPS/CB-MR membranes have better water vapor barrier than GPS/CB-ME membranes.     

Structure and I2/I redox catalytic behaviour of PEDOT-PSS films electropolymerized in aqueous medium: Implications for convenient counter electrodes in DSSC

The present paper focuses on the impact of different electro-synthesis processes, used to produce poly(3,4-ethylenedioxythiophene)-poly(styrenesulfonate) (PEDOT-PSS) systems in aqueous medium, on the polymer backbone and its electro-catalytic activity.FE-SEM and micro-Raman spectroscopy were used to analyze the samples obtained by varying the conditions of the electro-polymerization processes. The I₂/I⁻ redox behaviour of various PEDOT-PSS layers has been comparatively examined in relation to the surface morphology and structural characteristics of the polymer. A response similar to that of a conventional Pt electrode has been revealed for the films produced by chronoamperometric technique.The study has demonstrated that the polymer structure plays an important role in the electro-activity, providing a possibility to improve the redox performance of PEDOT-PSS films by a proper choice of the synthesis methods. Moreover, the use of aqueous solution as a reaction medium can be welcomed as a sustainable chemistry way involving the use of environmentally friendly chemicals.