Bayesian phylogeography of the Arawak expansion in lowland South America

Phylogenetic inference based on language is a vital tool for tracing the dynamics of human population expansions. The timescale of agriculture-based expansions around the world provides an informative amount of linguistic change ideal for reconstructing phylogeographies. Here we investigate the expansion of Arawak, one of the most widely dispersed language families in the Americas, scattered from the Antilles to Argentina. It has been suggested that Northwest Amazonia is the Arawak homeland based on the large number of diverse languages in the region. We generate language trees by coding cognates of basic vocabulary words for 60 Arawak languages and dialects to estimate the phylogenetic relationships among Arawak societies, while simultaneously implementing a relaxed random walk model to infer phylogeographic history. Estimates of the Arawak homeland exclude Northwest Amazonia and are bi-modal, with one potential homeland on the Atlantic seaboard and another more likely origin in Western Amazonia. Bayesian phylogeography better supports a Western Amazonian origin, and consequent dispersal to the Caribbean and across the lowlands. Importantly, the Arawak expansion carried with it not only language but also a number of cultural traits that contrast Arawak societies with other lowland cultures.     

Phylogeny of the mayfly family Leptohyphidae (Insecta: Ephemeroptera) in South America

Abstract.  A cladistic analysis of the South American members of the Ephemeropteran family Leptohyphidae is presented. A matrix of 73 taxa and 124 morphological characters was analysed under two distinct weighting criteria (implied weighting, which weights characters as a whole, and self-weighted optimization, which differentially weights character state transformations). To assess the monophyly of the Leptohyphidae, representatives of Ephemerellidae, Ephemerythidae, Machadorythidae, Teloganodidae, Tricorythidae, Coryphoridae and Melanemerellidae were also included. Trees were rooted in Ephemerellidae. Conspicuous differences in consensus topology occur when transformation costs among character states are weighted (including asymmetries). The differences in the assessments of character reliability in the two weighting criteria used are discussed. In many cases, self-weighting, in allowing for asymmetries in transformation costs, considered many of the character state transformations as more reliable (= informative) than implied weights (which needlessly down-weighted the whole character). The results confirm the monophyly of Leptohyphidae and support its sister-group relationship with Coryphoridae. The shortest trees do not support the recently proposed division of Leptohyphidae into two subfamilies. Ephemerelloidea higher classification is discussed briefly.     

Body counts in lowland South American violence

Violence was likely often a strong selective pressure in many traditional lowland South American societies. A compilation of 11 anthropological studies reporting cause of death shows that violence led to about 30% of adult deaths, of which about 70% were males. Here violent deaths are further itemized at the level of ethnographically-reported death events (particular duels, homicides, and raids) to provide more detailed insight into the causes and consequences of within- and between-group violence. Data for 238 death events (totaling 1145 deaths) from 44 lowland South American societies show that attacks are more deadly when treachery is used, when avenging a previous killing, and on external warfare raids between ethnolinguistic groups. That revenge raids kill more people on average than the original grievance, at least when conflicts are between ethnolinguistic groups, indicates a tendency towards increasingly vicious cycles of revenge killings. Motives of killings as noted in ethnographic sources, in order of importance, reportedly include revenge for previous killings and other wrong-doings like sorcery, jealousy over women, gain of captive women and children, fear or deterrence of impending attack, and occasionally the theft of material goods. Results may have implications for understanding the potential for multi-level selection by delineating the force of competition at varying scales of analysis within and between lowland South American societies.     

Patterns of endemism in the limestone flora of South African lowland fynbos

Taxonomie and biological aspects of endemism and Red Data Book status were studied amongst the limestone endemics of the lowland fynbos in the Cape Floristic Region, South Africa. Of the 110 limestone endemics, 1.8% are widely distributed in the Cape Floristic Region and 56.4% are regional endemics. Relative to flora of non-limestone lowland fynbos (n=538 species), the families which were overrepresented in terms of limestone endemics included the Ericaceae, Fabaceae, Polygalaceae, Rutaceae and Sterculiaceae. The Restionaceae was the only underrepresented family. The local limestone endemics were not significantly different from regional endemics in terms of their biological attributes. An analysis of the frequency of the biological traits associated with the limestone-endemic flora established a biological profile for a limestone endemic: a dwarf-to-low shrub with soil-stored seeds which are ant or wind dispersed. In terms of the species richness of limestone endemics, the De Hoop Nature Reserve was the hotspot within the region. Relative to the total species richness, the Hagelkraal and Stilbaai areas contained higher-than-predicted numbers of rare species. These areas require urgent attention if the unique floral diversity associated with limestone substrata within the Bredasdorp-Riversdale centre of endemism is to be conserved.     

Palm Management in South America

We reviewed information on management of useful palms in South America. We documented management for 96 species, from incidental activities intended to increase populations of wild palms to the inclusion of palms in complex agroforestry systems. Two species, Bactris gasipaes and Parajubaea cocoides, are domesticated. Managed species are remarkably fewer than species used in the region, which suggests that harvesters often disregard the fate of the species they use. The best way of managing palms is to employ harvest methods that do not decimate the populations. Although a variety of harvesting techniques have been documented, overharvest is common, and mismanagement prevails – unnecessary felling of palms in order to harvest leaves or fruits is a widespread practice. Research should focus on assessing production in response to management practices, but eradicating the habit of destructive harvest is an obvious priority. Research on palm management must be combined with actions addressed to all stakeholders of the palm/humans system.     

Cryptic speciation on the high seas; global phylogenetics of the copepod family Eucalanidae

Few genetic data are currently available to assess patterns of population differentiation and speciation in planktonic taxa that inhabit the open ocean. A phylogenetic study of the oceanic copepod family Eucalanidae was undertaken to develop a model zooplankton taxon in which speciation events can be confidently identified. A global survey of 20 described species (526 individuals) sampled from 88 locations worldwide found high levels of cryptic diversity at the species level. Mitochondrial (16S rRNA, CO1) and nuclear (ITS2) DNA sequence data support 12 new genetic lineages as highly distinct from other populations with which they are currently considered conspecific. Out of these 12, at least four are new species. The circumglobal, boundary current species Rhincalanus nasutus was found to be a cryptic species complex, with genetic divergence between populations unrelated to geographic distance. 'Conspecific' populations of seven species exhibited varying levels of genetic differentiation between Atlantic and Pacific basins, suggesting that continental landmasses form barriers to dispersal for a subset of circumglobal species. A molecular phylogeny of the family based on both mitochondrial (16S rRNA) and nuclear (ITS2, 18S rRNA) gene loci supports monophyly of the family Eucalanidae, all four eucalanid genera and the 'pileatus' and 'subtenuis' species groups.     

Peopling of Andean South America

Archeological, craniometrical, and genetic information is utilized to reconstruct possible migration routes used in the peopling of Andean South America. Special emphasis is given to the elaboration of craniometrical isoline maps and its application in testing models of population displacement based on archeological data. A genetic distance analysis among linguistic groupings complements the conclusions based on archeological and craniometrical information.     

Desiccation tolerant plants in South America

Summary Numerous Velloziaceae species concentrated in Minas Gerais, Brazil, constitute most of the desiccation tolerant flora of S. America. In the grasses, two Microchloa spp and Tripogon spicatus are desiccation tolerant. Though widespread, they are low growing and appear unimportant. With the exception of Anemia, desiccation tolerant ferns in dry land areas are related to the resurrection fern flora reported for N. America. The likely possibility of a desiccation tolerant flora of epiphytic ferns in rain forest areas was not investigated.     

Chagas' disease in pre-Columbian South America

The quest for the origin and dispersion of Chagas' disease, the second most important vector-borne disease in Latin America, has epidemiological, immunological, and genetical implications. Conjectures based on accounts of chroniclers, reviews of the archaeological literature and the present distribution of triatomine bugs, the vectors of the disease, held that the origin of the adaptation of Triatoma infestans (aspecies of the subfamily Triatominae) to human dwellings occurred in prehistoric times. The autopsy of 35 mummies exhumed in the Chilean desert, dated between 470 B.C. and 600 A.D., revealed the presence of clinical manifestations of Chagas' disease and put earlier speculations on a factual basis.     

Molecular phylogenetics of Australo-Papuan possums and gliders (family Petauridae)

Phylogenetic relationships within the possums of the family Petauridae, including their affinities with the family Pseudocheiridae, were inferred from DNA sequences obtained for the mitochondrial ND2 gene (1040 bp) combined with previously published partial 12S rDNA sequences. Short, deep internodes characterize some of the divergences obtained. The robustness of these nodes was assessed by several methods such as exclusion of taxa and partitioning of characters. In all analyses a monophyletic Pseudocheiridae was evident, whereas a monophyletic Petauridae was not as well supported. Within the Petauridae, Gymnobelideus was more closely related to Dactylopsila-Dactylonax than to Petaurus. This supports the results obtained from microcomplement fixation of albumin and DNA-DNA hybridization studies but conflicts with morphological data.     

Intestinal helminths in lowland South American Indians: some evolutionary interpretations

Data on intestinal parasite infections for South American Indians in prehistoric times as revealed by coprolite analysis are being used to support transoceanic migration routes from the Old World to the New World. These same findings on modern semi-isolated aborigines, considered persisting prehistoric patterns, are also of great importance as indicators of pre-Columbian peopling of South America. This is the case for the Lengua Indians from Paraguay, studied in the 1920s, and the Yanomami and the Salum? from Brazil, studied in the 1980s. The intestinal parasitic profile of these groups can be empirically associated with culture change, but no clear correlations with the population biology of their hosts can be made at present because of scarcity of data.