OLFML3 expression is decreased during prenatal muscle development and regulated by microRNA-155 in pigs

The Olfactomedin-like 3 (OLFML3) gene has matrix-related function involved in embryonic development. MicroRNA-155 (miR-155), 21- to 23-nucleotides (nt) noncoding RNA, regulated myogenesis by target mRNA. Our LongSAGE analysis suggested that OLFML3 gene was differently expressed during muscle development in pig. In this study, we cloned the porcine OLFML3 gene and detected its tissues distribution in adult Tongcheng pigs and dynamical expression in developmental skeletal muscle (12 prenatal and 10 postnatal stages) from Landrace (lean-type) and Tongcheng (obese-type) pigs. Subsequently, we analyzed the interaction between OLFML3 and miR-155. The OLFML3 was abundantly expressed in liver and pancreas, moderately in lung, small intestine and placenta, and weakly in other tissues and postnatal muscle. There were different dynamical expression patterns between Landrace and Tongcheng pigs during prenatal skeletal muscle development. The OLFML3 was down-regulated (33-50 days post coitus, dpc), subsequently up-regulated (50-70 dpc), and then down-regulated (70-100 dpc) in Landrace pigs, while in Tongcheng pigs, it was down-regulated (33-50 dpc), subsequently up-regulated (50-55 dpc) and then down-regulated (55-100 dpc). There was higher expression in Tongcheng than Landrace in prenatal muscle from 33 to 60 dpc, and opposite situation from 65 to 100 dpc. Dual luciferase assay and real time PCR documented that OLFML3 expression was regulated by miR-155 at mRNA level. Our research indicated that OLFML3 gene may affect prenatal skeletal muscle development and was regulated by miR-155. These finding will help understanding biological function and expression regulation of OLFML3 gene in mammal animals.     

SMAD7, an antagonist of TGF-beta signaling,is a candidate of prenatal skeletal muscle development and weaning weight in pigs

SMAD7 promotes and enhances skeletal muscle differentiation by inhibiting transforming growth factor beta (TGF-β)/activin signaling and bone morphogenetic protein (BMP) pathways. However, its function, the mechanism regulating its translation, and its association with production meat traits remain unclear in pigs. In this study, we explored SMAD7 gene spatio-temporal and tissue distribution, conducted a single nucleotide polymorphism association analysis, and examined regulation of its expression during skeletal muscle development. We found that SMAD7 was positively related to TGF-β pathway genes and mainly expressed in prenatal developing muscle, and dual luciferase and western blot assays demonstrated that SMAD7 expression was regulated by miRNA-21 at the protein level via inhibition of mRNA translation. Finally, the association analysis showed that a single nucleotide mutation (Exon 4_28816;C/A) was significantly associated with the weaning weight of piglets among Yorkshire pigs. These data indicate that SMAD7 plays a potentially important role in mammalian prenatal skeletal muscle development and is a candidate gene for promoting greater weaning weight in pig breeding.     

MicroRNA-323-3p promotes myogenesis by targeting Smad2

Skeletal muscle is an important and complex organ with multiple biological functions in humans and animals. Proliferation and differentiation of myoblasts are the key steps during the development of skeletal muscle. MicroRNA (miRNA) is a class of 21-nucleotide noncoding RNAs regulating gene expression by combining with the 3′-untranslated region of target messenger RNA. Many studies in recent years have suggested that miRNAs play a critical role in myogenesis. Through high-throughput sequencing, we found that miR-323-3p showed significant changes in the longissimus dorsi muscle of Rongchang pigs in different age groups. In this study, we discovered that overexpression of miR-323-3p repressed myoblast proliferation and promoted differentiation, whereas the inhibitor of miR-323-3p displayed the opposite results. Furthermore, we predicted Smad2 as the target gene of miR-323-3p and found that miR-323-3p directly modulated the expression level of Smad2. Then luciferase reporter assays verified that Smad2 was a target gene of miR-323-3p during the differentiation of myoblasts. These findings reveal that miR-323-3p is a positive regulator of myogenesis by targeting Smad2. This provides a novel mechanism of miRNAs in myogenesis.     

MicroRNA-21 Regulates PI3K/Akt/mTOR Signaling by Targeting TGFβI during Skeletal Muscle Development in Pigs

MicroRNAs (miRNAs), which are short (22–24 base pairs), non-coding RNAs, play critical roles in myogenesis. Using Solexa deep sequencing, we detected the expression levels of 229 and 209 miRNAs in swine skeletal muscle at 90 days post-coitus (E90) and 100 days postnatal (D100), respectively. A total of 138 miRNAs were up-regulated on E90, and 31 were up-regulated on D100. Of these, 9 miRNAs were selected for the validation of the small RNA libraries by quantitative RT-PCR (RT-qPCR). We found that miRNA-21 was down-regulated by 17-fold on D100 (P<0.001). Bioinformatics analysis suggested that the transforming growth factor beta-induced (TGFβI) gene was a potential target of miRNA-21. Both dual luciferase reporter assays and western blotting demonstrated that the TGFβI gene was regulated by miRNA-21. Co-expression analysis revealed that the mRNA expression levels of miRNA-21 and TGFβI were negatively correlated (r = -0.421, P = 0.026) in skeletal muscle during the 28 developmental stages. Our results revealed that more miRNAs are expressed in prenatal than in postnatal skeletal muscle. The miRNA-21 is a novel myogenic miRNA that is involved in skeletal muscle development and regulates PI3K/Akt/mTOR signaling by targeting the TGFβI gene.     

MiR-27b promotes sheep skeletal muscle satellite cell proliferation by targeting <Emphasis Type="Italic">myostatin</Emphasis> gene

To investigate the role of miR-27b in sheep skeletal muscle development, here we first cloned the sequence of sheep pre-miR-27b, then further investigated its expression pattern in sheep skeletal muscle in vivo, the relationship of miR-27b expression and sheep skeletal muscle satellite cell proliferation and differentiation in vitro, and then finally confirmed its target gene during this development process. MiR-27b sequence, especially its mature sequence, was conservative among different species. MiR-27b highly expressed in sheep skeletal muscle than other tissues. In skeletal muscle of Suffolk and Bashbay sheep, miR-27b was upregulated during foetal period and downregulated during postnatal period significantly (\(P{<}0.01\)), but it still kept a relatively higher expression level in skeletal muscle of postnatal Suffolk sheep than Bashbay. There is a potential target site of miR-27b on \(3^\prime \)-UTR of sheep myostatin (MSTN) mRNA, and the double luciferase reporter assay proved that miR-27b could successfully bind on this site. When sheep satellite cells were in the proliferation status, miR-27b was upregulated and MSTN was downregulated significantly (\(P{<}0.01\)). When miR-27b mimics was transfected into sheep satellite cells, the cell proliferation was promoted and the protein level of MSTN was significantly downregulated (\(P{<}0.01\)). Moreover, miR-27b regulated its target gene MSTN by translation repression at an early step, and followed by inducing mRNA degradation in sheep satellite cells. Based on these results, we confirm that miR-27b could promote sheep skeletal muscle satellite cell proliferation by targeting MSTN and suppressing its expression.     

MiR-27靶基因的分析及鉴定

MicroRNAs(miRNAs)是一类约20～25nt的小分子核苷酸,在细胞内的多种生物学过程,如细胞增殖、凋亡、生长、分化和代谢等过程中具有重要的功能。已知miR-27在脂肪细胞和肌肉细胞的发育过程中起了重要作用,其在神经细胞中的表达调节至今仍不清楚。在本研究中,通过miRBase和TargetScan数据库分析了miR-27的靶基因,构建了miR-27的真核表达载体,改造了萤火虫荧光素酶和海肾荧光素酶报告载体,将miR-27的靶基因Bmi1的3′-UTR融合到报告载体中,转染神经胶质瘤细胞,利用双荧光素酶检测系统分析荧光素酶的活性。研究发现miR-27a和miR-27b共同的靶基因主要调节发育过程。MiR-27真核表达载体能产生成熟态的miR-27。MiR-27a、miR-27b或miR-27a和miR-27b联合与Bmi1的3′-UTR的正义序列共转染U343细胞能明显降低萤火虫荧光素酶的活性(分别P0.05,P0.05,P0.01),这提示了Bmi1可能为miR-27的靶基因。     

MiR-34a通过抑制Pgc-1β和线粒体生成促进小鼠骨骼肌脂肪异位沉积

过氧化物酶体增殖物激活受体γ辅激活因子-1β（peroxisome proliferative activated receptor γ coactivator 1 β,Pgc-1β）与线粒体生成相关。已有研究证明,miR-34a在肝组织脂肪异位沉积中发挥重要作用,但是否与骨骼肌的脂肪异位沉积相关尚不清楚。本研究以C57Bl/6J小鼠为研究对象,通过尾静脉注射miR-34a模拟物,探讨miR-34a过表达对小鼠骨骼肌脂肪沉积的影响。组织切片进行油红O染色及甘油三酯含量测定揭示,miR-34a过表达的小鼠骨骼肌组织中脂滴积累及甘油三酯含量显著增加。实时荧光定量PCR（qRT-PCR）显示,与对照鼠比较,miR-34a处理的小鼠骨骼肌组织中的脂肪酸合成酶(Fas）表达显著上调,而脂肪酸氧化分解相关基因产物肉毒碱棕榈酰基转移酶1α（Cpt 1α）表达显著下调,提示miR-34a调控骨骼肌内脂肪的沉积机制可能是通过促进脂肪酸生成和抑制脂肪酸分解实现的。qRT-PCR和Western印迹证明,miR-34a可抑制Pgc-1β蛋白的表达。CoxⅡ/28S比例（线粒体定量指标）测定提示,注射miR-34a模拟物导致小鼠骨骼肌线粒体数目显著下调。生物信息分析显示,Pgc-1β mRNA的3′-UTR存在 miR-34a的潜在识别位点,因此miR-34a可能通过靶向识别Pgc-1β的3′-UTR抑制Pgc-1β表达,从而抑制线粒体生成。上述结果证明,miR-34a能通过靶向抑制PGC-1β表达,抑制线粒体生成,继而减少脂肪酸氧化分解,导致骨骼肌脂肪沉积增加。此外,上调脂肪酸合成酶也可能是miR-34a导致骨骼肌脂肪沉积增加的另一原因,其作用机制需进一步研究。     

过表达miR-155抑制C2C12成肌分化

为明确miR-155在C2C12成肌分化中的作用及分子机制,本研究构建了miR-155过表达腺病毒载体,运用过表达miR-155的腺病毒感染C2C12,并诱导其成肌分化。通过形态学观察,成肌标志基因mRNA和蛋白表达水平的检测,以及双荧光素酶报告基因系统对预测的miR-155靶基因(TCF4)的验证,结果表明,C2C12细胞分化中,过表达miR-155明显降低了肌管的形成,成肌标志基因MyoG和MyHC的mRNA表达量极显著地下降(P0.01),而MyoD差异不显著(P0.05),成肌标志基因蛋白检测结果与mRNA检测结果一致;进一步研究显示miR-155与预测的TCF4基因的3'UTR 3个靶点(1487-1493,1516-1522,4532-4583)中的1个(4532-4538)结合,并发现过表达miR-155显著降低了TCF4的mRNA水平(P0.05)。表明miR-155可能通过靶向TCF4抑制C2C12成肌分化。     

Identification and profiling of microRNAs from skeletal muscle of the common carp

The common carp is one of the most important cultivated species in the world of freshwater aquaculture. The cultivation of this species is particularly productive due to its high skeletal muscle mass; however, the molecular mechanisms of skeletal muscle development in the common carp remain unknown. It has been shown that a class of non-coding ～22 nucleotide RNAs called microRNAs (miRNAs) play important roles in vertebrate development. They regulate gene expression through sequence-specific interactions with the 3' untranslated regions (UTRs) of target mRNAs and thereby cause translational repression or mRNA destabilization. Intriguingly, the role of miRNAs in the skeletal muscle development of the common carp remains unknown. In this study, a small-RNA cDNA library was constructed from the skeletal muscle of the common carp, and Solexa sequencing technology was used to perform high throughput sequencing of the library. Subsequent bioinformatics analysis identified 188 conserved miRNAs and 7 novel miRNAs in the carp skeletal muscle. The miRNA expression profiling showed that, miR-1, miR-133a-3p, and miR-206 were specifically expressed in muscle-containing organs, and that miR-1, miR-21, miR-26a, miR-27a, miR-133a-3p, miR-206, miR-214 and miR-222 were differentially expressed in the process of skeletal muscle development of the common carp. This study provides a first identification and profiling of miRNAs related to the muscle biology of the common carp. Their identification could provide clues leading towards a better understanding of the molecular mechanisms of carp skeletal muscle development.     

miRNA-183 Suppresses Apoptosis and Promotes Proliferation in Esophageal Cancer by Targeting PDCD4

In our previous study, miRNA-183, a miRNA in the miR-96-182-183 cluster, was significantly over-expressed in esophageal squamous cell carcinoma (ESCC). In the present study, we explored the oncogenic roles of miR-183 in ESCC by gain and loss of function analysis in an esophageal cancer cell line (EC9706). Genome-wide mRNA microarray was applied to determine the genes that were regulated directly or indirectly by miR-183. 3′UTR luciferase reporter assay, RT-PCR, and Western blot were conducted to verify the target gene of miR-183. Cell culture results showed that miR-183 inhibited apoptosis (p < 0.05), enhanced cell proliferation (p < 0.05), and accelerated G1/S transition (p < 0.05). Moreover, the inhibitory effect of miR-183 on apoptosis was rescued when miR-183 was suppressed via miR-183 inhibitor (p < 0.05). Western blot analysis showed that the expression of programmed cell death 4 (PDCD4), which was predicted as the target gene of miR-183 by microarray profiling and bioinformatics predictions, decreased when miR-183 was over-expressed. The 3′UTR luciferase reporter assay confirmed that miR-183 directly regulated PDCD4 by binding to sequences in the 3′UTR of PDCD4. Pearson correlation analysis further confirmed the significant negative correlation between miR-183 and PDCD4 in both cell lines and in ESCC patients. Our data suggest that miR-183 might play an oncogenic role in ESCC by regulating PDCD4 expression.