Factors linked to interannual variation in the metazoan parasite communities of black skipjack,Euthynnus lineatus (Pisces: Scombridae)

Marine parasite communities can exhibit temporal and spatial changes in response to seasonal and local variations in several biotic and abiotic environmental factors. Limited attention has been given to the influence of abiotic factors, so their effects on parasite community structure remain unclear. A total of 496 specimens of Euthynnus lineatus were collected over a 7‐year period (2012–2018) from Acapulco Bay, Mexico. Their parasite communities were analyzed to determine if they experience interannual variations due to local biotic and abiotic factors. Thirty‐three metazoan parasite species were recovered and identified: four species of Monogenea (adults); 16 of Digenea (one larvae and 15 adults); two of Acanthocephala (adults); two of Cestoda (larvae); three of Nematoda (two larvae and one adult); and six of Crustacea (three Copepoda, and three Isopoda). Species richness was greatest among the digeneans, which represented 48% of the total species recovered, followed by the crustaceans (19% of total species). Species richness at the component community level (14–24 species) was similar to reported richness in other small tuna species. The component communities and infracommunities of E. lineatus exhibited a similar pattern: high species richness and diversity, and numerical dominance by a single species, mainly by one of the didymozoids Allopseudocolocyntotrema claviforme or Pseudocolocyntotrema yaito. Parasite community structure and species composition varied among sampling years. Variations were possibly caused by a combination of abiotic and biotic factors which generated notable changes in the infection levels of several component species during the study period. These communities may therefore be unpredictable in terms of structure and species composition, as has been suggested for other communities of marine parasites.     

Habitat modeling with single- and multi-target trees and ensembles

Habitat modeling studies the influence of abiotic factors on the abundance of a given taxonomic group of organisms. In this work, we investigate the effect of environmental conditions on communities of organisms in three different ecosystems. Namely, we consider the diatom community in Lake Prespa, Macedonia, the Collembola community in the soils of Denmark and 14 organisms living in Slovenian rivers. The data for these case studies consist of physical and chemical properties of the environment as well as the relative abundances or presence of the organisms under investigation.The multi-species data are analyzed by constructing habitat models for each species separately (single-target decision trees) or by constructing a single habitat model for all the species (multi-target predictive clustering trees). Typically, habitat models are constructed for each species individually and thus do not exploit the interactions between/among species. While approaches for building a single habitat model of a group of organisms exist, they typically construct models that are not readily interpretable and, thus, are seldom used by the research community. In this work, we explore in detail the construction of interpretable models of both types. Furthermore, we construct ensembles of decision trees and ensembles of predictive clustering trees to increase the predictive performance of the models.The key outcomes of the interpretation and discussion of the obtained models for each case study are as follows. First, we show that multi-target predictive clustering trees are a very useful method for the analysis of multi-species data and that they are more efficient and produce more concise models than single-target decision trees. The obtained multi-target habitat models are readily interpretable and identify the environmental conditions that influence the composition and structure of a given community of organisms. Second, we conclude that the temperature and magnesium are the most important factors influencing the complete diatom community in Lake Prespa, while the nitrates and the temperature influence more the most abundant species. Third, the biological oxygen demand is the most influential factor for the abundance of river dwelling species, while the river community structure is mostly influenced by the NO₂ concentration. Finally, the structure of the community of soil microarthropods is mostly influenced by the soil type and the crop history.     

Paleoecology of the Greater Phyllopod Bed community,Burgess Shale

To better understand temporal variations in species diversity and composition, ecological attributes, and environmental influences for the Middle Cambrian Burgess Shale community, we studied 50,900 fossil specimens belonging to 158 genera (mostly monospecific and non-biomineralized) representing 17 major taxonomic groups and 17 ecological categories. Fossils were collected in situ from within 26 massive siliciclastic mudstone beds of the Greater Phyllopod Bed (Walcott Quarry — Fossil Ridge). Previous taphonomic studies have demonstrated that each bed represents a single obrution event capturing a predominantly benthic community represented by census- and time-averaged assemblages, preserved within habitat. The Greater Phyllopod Bed (GPB) corresponds to an estimated depositional interval of 10 to 100 KA and thus potentially preserves community patterns in ecological and short-term evolutionary time.The community is dominated by epibenthic vagile deposit feeders and sessile suspension feeders, represented primarily by arthropods and sponges. Most species are characterized by low abundance and short stratigraphic range and usually do not recur through the section. It is likely that these are stenotopic forms (i.e., tolerant of a narrow range of habitats, or having a narrow geographical distribution). The few recurrent species tend to be numerically abundant and may represent eurytopic organisms (i.e., tolerant of a wide range of habitats, or having a wide geographical distribution). Rarefaction curves demonstrate variation in species richness through the GPB and suggest that more stenotopic species could still be discovered with additional sampling. Comparisons between richness and evenness trends suggest that the community is relatively stable overall, despite gradual species turnover through time, especially in assemblages from younger beds. Less diverse assemblages with low species evenness possibly represent the onset of less favourable environmental conditions.Fossil occurrences in individual beds were analysed using a range of statistical techniques (Correspondence Analysis, Canonical Correspondence Analysis, Minimum Spanning Tree, Indicator Species Analysis, Mantel Test) to extract community patterns. Results suggest the presence of four fossil assemblages based on distinct species associations. The different assemblages presumably reflect variations in environmental and ecological conditions, some acting through time, leading to species turnover. “Disturbances” (e.g., changes in paleo-redox conditions), differences in substrate firmness, and limited taphonomic biases are probably the main factors contributing to community structure. The influence of ecological factors, however, is also predicted from non-random patterns of species recurrences in successive events. Preliminary comparisons with Lower Cambrian Chengjiang-type assemblages of southern China suggest that the overall structure and ecology of Cambrian communities remained relatively stable until at least the Middle Cambrian in subtidal siliciclastic soft substrate environments.Comparisons with modern marine benthic ecosystems further suggest the Burgess Shale community was probably highly dependent on immigration from a regional pool of species after each burial event. This could support the view that species availability, habitat characteristics, and recolonisation processes were more important in structuring the community in the long-term than species interactions or environmental variations at a local scale.     

Community structure of macrobenthos in homestead ponds of Noakhali coast,Bangladesh

The integrity of the homestead pond supply depends on how various macrobenthic communities make their living more diversified and contribute to complex food webs. In addition, the macrobenthic community are significantly used as indicator organisms to detect the pollution impacts in aquatic ecosystems. In this study, we show the data about the diversity and community structure of macrobenthos and their relationship with environmental variables in homestead ponds of Noakhali coast from January 2019 to August 2019. The current study yielded 17 species belonging to seven taxonomic groups with a mean density of 3630 ind./m². The Nematode community, comprising 48.86% of the total taxonomic groups with Prionchulus sp. as the dominant macrobenthic species represented more than 31% of the total macrobenthic taxa, and showed a significant negative correlation with the value of salinity, DO, pH. The environmental variables and diversity indices were detected significant variations (P < 0.05) among stations by the Kruskal-Wallis ANOVA, whereas Shannon-Wiener Diversity Index (H´) assessed moderate pollution, Evenness index (J) assessed uniform distributions of macrobenthic community, and environmental variables showed acceptable condition for the productivity of ponds. Cluster analysis (CA) and Non-metric multidimensional scaling (nMDS) demonstrate demarcations in the community structure of macrobenthos between samples. Within macrobenthic communities, Canonical Correspondence Analysis (CCA) provided insights and interpretations of the relationships between species and environmental gradients. Macrobenthic community reached the most abundance at a lower temperature, transparency and a higher DO, pH and salinity.     

The effects of flood pulse on multiple aquatic organisms in a seasonal shallow lake

Different aquatic organisms have different reactions to environmental variations due to their different ways of reaction traits. Understanding the effect of hydrological disturbance on lake from the perspective of multiple aquatic organisms is important for lake management. Poyang Lake (PYL) experiences severe hydrological disturbance under the effects of flood pulse during the rainy season. In this study, we analyzed the responses of phytoplankton, zooplankton, and macroinvertebrates to hydrological disturbance during the rainy season in PYL. Flood pulse determined the spatial variation in turbidity (Turb), transparency (Trans), dissolved oxygen (DO), total phosphorus (TP), and soluble reactive phosphorus. Physical factors (Turb, Trans, conductivity) explained phytoplankton (9.6%) and zooplankton (15%) community variation, and the combination of physical and nutrient factors explained macroinvertebrate (3.8%) community variation. Cyclotella sp., Attheya zachariasi, and Melosira ambigua were the keystone taxa of phytoplankton, and these taxa were driven by Turb and Trans. Brachionus angularia, Polyarthra vulgaris, Filinia longiseta, and Diffugia globulosa were the keystone taxa of zooplankton and entire aquatic organisms, which contributed a lot to maintain the biological community stability possibly through the food web. These keystone taxa were stimulated by high Trans, DO, dissolved organic carbon (DOC) and nitrate (NO₃^?). We found habitat conditions (Turb, Trans and DO) were the prominent factors influencing the aquatic organism structure in strong hydrological disturbance environment. For the keystone taxa, both habitat conditions (i.e., DO) and exogenous nutrient inputs (i.e., DOC and NO₃^?) caused significant effect. This study provides new insights into the holistic response of multiple aquatic communities to flood pulse as well as the role of keystone species in maintaining community stability, which could guide the conservation and management of seasonal lake ecosystems.

     

Impact of plant functional group, plant species, and sampling time on the composition of nirK-type denitrifier communities in soil

We studied the influence of eight nonleguminous grassland plant species belonging to two functional groups (grasses and forbs) on the composition of soil denitrifier communities in experimental microcosms over two consecutive years. Denitrifier community composition was analyzed by terminal restriction fragment length polymorphism (T-RFLP) of PCR-amplified nirK gene fragments coding for the copper-containing nitrite reductase. The impact of experimental factors (plant functional group, plant species, sampling time, and interactions between them) on the structure of soil denitrifier communities (i.e., T-RFLP patterns) was analyzed by canonical correspondence analysis. While the functional group of a plant did not affect nirK-type denitrifier communities, plant species identity did influence their composition. This effect changed with sampling time, indicating community changes due to seasonal conditions and a development of the plants in the microcosms. Differences in total soil nitrogen and carbon, soil pH, and root biomass were observed at the end of the experiment. However, statistical analysis revealed that the plants affected the nirK-type denitrifier community composition directly, e.g., through root exudates. Assignment of abundant T-RFs to cloned nirK sequences from the soil and subsequent phylogenetic analysis indicated a dominance of yet-unknown nirK genotypes and of genes related to nirK from denitrifiers of the order Rhizobiales. In conclusion, individual species of nonleguminous plants directly influenced the composition of denitrifier communities in soil, but environmental conditions had additional significant effects.     

Disentangling the relative importance of species occurrence,abundance and intraspecific variability in community assembly: a trait‐based approach at the whole‐plant level in Mediterranean forests

Understanding which factors and rules govern the process of assembly in communities constitutes one of the main challenges of plant community ecology. The presence of certain functional strategies along broad environmental gradients can help to understand the patterns observed in community assembly and the filtering mechanisms that take place. We used a trait‐based approach, quantifying variations in aboveground (leaf and stem) and belowground (root) functional traits along environmental gradients in Mediterranean forest communities (south Spain). We proposed a new practical method to quantify the relative importance of species turnover (distinguishing between species occurrence and abundance) versus intraspecific variation, which allowed us to better understand the assemblage rules of these plant communities along environmental gradients. Our results showed that the functional structure of the studied plant communities was highly determined by soil environment. Results from our modelling approach based on maximum likelihood estimators showed a predominant influence of soil water storage on most of the community functional traits. We found that changes in community functional structure along environmental gradients were mainly promoted by species turnover rather than by intraspecific variability. Specifically, our new method of variance decomposition demonstrated that between‐site trait variation was the result of changes in species occurrence rather than in the abundance of certain dominant species. In conclusion, this study showed that water availability promoted the predominance of specific trait values (both in above and belowground fractions) associated to a resource acquisition or conservation strategy. In addition, we provided evidence that changes on community functional structure along the environmental gradient were mainly promoted by a process of species replacement, which represent a crucial step towards a more general understanding of the relative importance of intraspecific versus interspecific trait variation in these woody Mediterranean communities.     

Impact of Plant Functional Group, Plant Species, and Sampling Time on the Composition of nirK-Type Denitrifier Communities in Soil

We studied the influence of eight nonleguminous grassland plant species belonging to two functional groups (grasses and forbs) on the composition of soil denitrifier communities in experimental microcosms over two consecutive years. Denitrifier community composition was analyzed by terminal restriction fragment length polymorphism (T-RFLP) of PCR-amplified nirK gene fragments coding for the copper-containing nitrite reductase. The impact of experimental factors (plant functional group, plant species, sampling time, and interactions between them) on the structure of soil denitrifier communities (i.e., T-RFLP patterns) was analyzed by canonical correspondence analysis. While the functional group of a plant did not affect nirK-type denitrifier communities, plant species identity did influence their composition. This effect changed with sampling time, indicating community changes due to seasonal conditions and a development of the plants in the microcosms. Differences in total soil nitrogen and carbon, soil pH, and root biomass were observed at the end of the experiment. However, statistical analysis revealed that the plants affected the nirK-type denitrifier community composition directly, e.g., through root exudates. Assignment of abundant T-RFs to cloned nirK sequences from the soil and subsequent phylogenetic analysis indicated a dominance of yet-unknown nirK genotypes and of genes related to nirK from denitrifiers of the order Rhizobiales. In conclusion, individual species of nonleguminous plants directly influenced the composition of denitrifier communities in soil, but environmental conditions had additional significant effects.     

Relocation,high‐latitude warming and host genetic identity shape the foliar fungal microbiome of poplars

Micro‐organisms associated with plants and animals affect host fitness, shape community structure and influence ecosystem properties. Climate change is expected to influence microbial communities, but their reactions are not well understood. Host‐associated micro‐organisms are influenced by the climate reactions of their hosts, which may undergo range shifts due to climatic niche tracking, or may be actively relocated to mitigate the effects of climate change. We used a common‐garden experiment and rDNA metabarcoding to examine the effect of host relocation and high‐latitude warming on the complex fungal endophytic microbiome associated with leaves of an ecologically dominant boreal forest tree (Populus balsamifera L.). We also considered the potential effects of poplar genetic identity in defining the reactions of the microbiome to the treatments. The relocation of hosts to the north increased the diversity of the microbiome and influenced its structure, with results indicating enemy release from plausible pathogens. High‐latitude warming decreased microbiome diversity in comparison with natural northern conditions. The warming also caused structural changes, which made the fungal communities distinct in comparison with both low‐latitude and high‐latitude natural communities, and increased the abundance of plausible pathogens. The reactions of the microbiome to relocation and warming were strongly dependent on host genetic identity. This suggests that climate change effects on host–microbiome systems may be mediated by the interaction of environmental factors and the population genetic processes of the hosts.     

Neutral mechanisms and niche differentiation in steady-state insular microbial communities revealed by single cell analysis

In completely insular microbial communities, evolution of community structure cannot be shaped by the immigration of new members. In addition, when those communities are run in steady state, the influence of environmental factors on their assembly is reduced. Therefore, one would expect similar community structures under steady-state conditions. Yet, in parallel setups, variability does occur. To reveal ecological mechanisms behind this phenomenon, five parallel reactors were studied at the single-cell level for about 100 generations and community structure variations were quantified by ecological measures. Whether community variability can be controlled was tested by implementing soft temperature stressors as potential synchronizers. The low slope of the lognormal rank-order abundance curves indicated a predominance of neutral mechanisms, i.e., where species identity plays no role. Variations in abundance ranks of subcommunities and increase in inter-community pairwise β-diversity over time support this. Niche differentiation was also observed, as indicated by steeper geometric-like rank-order abundance curves and increased numbers of correlations between abiotic and biotic parameters during initial adaptation and after disturbances. Still, neutral forces dominated community assembly. Our findings suggest that complex microbial communities in insular steady-state environments can be difficult to synchronize and maintained in their original or desired structure, as they are non-equilibrium systems.     

Effect of Environmental and Temporal Factors on Patterns of Rarity of Ephemeroptera in Stream of the Brazilian Cerrado

Patterns of species’ abundance and occurrence over time and space allow division of species into (i) common species, which are abundant, but have a low diversity, and (ii) rare species, which are far more diverse and less abundant. Understanding the relationships among these two species groups and how they are affected by environmental conditions is a major challenge for ecologists, especially considering the distinction between local environmental factors and regional factors and variations in abundance over the course of the year. In this study, we focused on the long-term relationship between the abundance of rare and common ephemeropterans and abiotic factors on local and regional scales. Our hypotheses are that common species will be affected primarily by regional environmental variables (i), whereas rare species will be influenced more by temporal variation (ii). Together, both local and regional abiotic variables, plus temporal variation, best explained the abundance of the common species, whereas temporal variation was the best predictor of rare species. Considering the theoretical aspects and the empirical evidence, we discuss the results based on the plasticity of the common species and the life cycle of the rare ones. We believe that our findings reinforce the need for the deconstruction of communities for a deeper understanding of their relationships with abiotic variables and, in particular, the specific aspects of these relationships in the context of the different guilds of the community.     

Effects of eutrophication, seasonality and macrofouling on the diversity of bacterial biofilms in equatorial coral reefs

Biofilms play an important role as a settlement cue for invertebrate larvae and significantly contribute to the nutrient turnover in aquatic ecosystems. Nevertheless, little is known about how biofilm community structure generally responds to environmental changes. This study aimed to identify patterns of bacterial dynamics in coral reef biofilms in response to associated macrofouling community structure, microhabitat (exposed vs. sheltered), seasonality, and eutrophication. Settlement tiles were deployed at four reefs along a cross-shelf eutrophication gradient and were exchanged every 4 months over 20 months. The fouling community composition on the tiles was recorded and the bacterial community structure was assessed with the community fingerprinting technique Automated Ribosomal Intergenic Spacer Analysis (ARISA). Bacterial operational taxonomic unit (OTU) number was higher on exposed tiles, where the fouling community was homogenous and algae-dominated, than in sheltered habitats, which were occupied by a variety of filter feeders. Furthermore, OTU number was also highest in eutrophied near-shore reefs, while seasonal variations in community structure were most pronounced in the oligotrophic mid-shelf reef. In contrast, the macrofouling community structure did not change significantly with seasons. Changes in bacterial community patterns were mostly affected by microhabitat, seasonal and anthropogenically derived changes in nutrient availability, and to a lesser extent by changes in the macrofouling community structure. Path analysis revealed a complex interplay of various environmental and biological factors explaining the spatial and temporal variations in bacterial biofilm communities under natural conditions.     

Local factors determine plant community structure on closely neighbored islands

Despite the recent popularity of the metacommunity concept, ecologists have not evaluated the applicability of different metacommunity frameworks to insular organisms. We surveyed 50 closely spaced islands in the Thousand-Island Lake of China to examine the role of local (environmental) and regional (dispersal) factors in structuring woody plant assemblages (tree and shrub species) on these islands. By partitioning the variation in plant community structure into local and regional causes, we showed that local environmental conditions, specifically island morphometric characteristics, accounted for the majority of the variation in plant community structure among the studied islands. Spatial variables, representing the potential importance of species dispersal, explained little variation. We conclude that one metacommunity framework-species sorting-best characterizes these plant communities. This result reinforces the idea that the traditional approach of emphasizing the local perspective when studying ecological communities continues to hold its value.     

Geographic variations of seasonality and coexistence in communities: The role of diversity and climate

One of the most conspicuous and widely analyzed patterns in ecology is the latitudinal gradient in species richness. Over the 200 years since its recognition, several hypotheses have accumulated in order to account for spatial variations in diversity. Geographic variations in seasonality have been repeatedly proposed as a determinant of community richness. However, the geographic structure of community seasonality has not yet been analyzed. In the present work we evaluated three hypotheses that account for variations in the temporal structuring of communities: first, environmental seasonality determines community seasonality; second, community richness determines its degree of structuring; and third, the presence of an increase in species segregation with latitude, reflected in a pattern of species negative co‐occurrence. The hypotheses were evaluated using path analysis on 29 amphibian communities from South America, connecting latitude, environmental conditions, diversity, seasonality, and coexistence structure – nestedness and negative co‐occurrence – within communities. Latitude positively affects community seasonality through an increase in temperature seasonality, but a weak negative direct effect suggests that other variables not considered in the model – such as the strength of biotic interactions – could also be involved. Both latitude and diversity (directly and indirectly) determine an increase in negative co‐occurrence and nestedness. This suggests that groups of species that are mutually nested in time are internally segregated. Further, the strength of this structure is determined by community diversity and latitude. Temporal structuring of a community is associated with latitude and diversity, pointing to the existence of a systematic change in community organization far beyond, but probably interrelated, with the recognized latitudinal trend in richness. The available information and analysis supported the three hypotheses evaluated.     

Additive effects of functionally dissimilar above- and belowground organisms on a grassland plant community

Aims In nature, plant communities are affected simultaneously by a variety of functionally dissimilar organisms both above and below the ground. However, there is a gap of knowledge on interactive effects of functionally dissimilar organisms on plant communities that is needed to be filled to better understand and predict the general impact of biotic factors on plant communities.Methods We conducted a full-factorial mesocosm study to investigate the individual and combined impacts of above- and belowground functionally dissimilar organisms on a grassland plant community. We studied the effects of aboveground herbivores (Helix aspersa, Gastropoda), arbuscular mycorrhizal fungi (AMF; Glomus spp., Glomeromycota) and endogeic earthworms (Aporrectodea spp., Lumbricidae) on the diversity, structure and productivity of an experimental grassland plant community and each other.Important findings Aboveground herbivory by snails decreased, AMF increased and earthworms had no effects on the diversity of the grassland plant community, while their combined effects were additive. The biomass of the plant community was negatively affected by snails and AMF, while no effects of earthworms or interaction effects were found. The plant species were differently affected by snails and AMF. No effects of the above- and belowground organisms on each other's performance were detected. Since the effects of the functionally dissimilar organisms on the grassland plant community were mainly independent, the results indicate that their combined effects may be predicted by knowing the individual effects, at least under the conditions used in the present mesocosm study.     

Environmental and spatial filters of zooplankton metacommunities in shallow pools in high‐elevation peatlands in the tropical Andes

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The arthropod,but not the vertebrate host or its environment,dictates bacterial community composition of fleas and ticks

Bacterial community composition in blood-sucking arthropods can shift dramatically across time and space. We used 16S rRNA gene amplification and pyrosequencing to investigate the relative impact of vertebrate host-related, arthropod-related and environmental factors on bacterial community composition in fleas and ticks collected from rodents in southern Indiana (USA). Bacterial community composition was largely affected by arthropod identity, but not by the rodent host or environmental conditions. Specifically, the arthropod group (fleas vs ticks) determined the community composition of bacteria, where bacterial communities of ticks were less diverse and more dependent on arthropod traits—especially tick species and life stage—than bacterial communities of fleas. Our data suggest that both arthropod life histories and the presence of arthropod-specific endosymbionts may mask the effects of the vertebrate host and its environment.     

Some rules of soil invertebrate community organization (by the example of Amur Basin mesofauna)

Some rules of organization of soil communities in the zone of mixed, Jeddo spruce, and larch taiga as well as forest-steppe in the Amur Basin have been formulated on the basis of the factual data. Abundant resources in the soil layer proved to decrease the competition in favor of neutralism, which allows sister species to occupy the same ecological niche. The stability of soil conditions allows considerable contraction of the realized niche volume, which increases species richness in soil. The biocenotic significance of soil organisms is determined by their biomass, productivity, and functional interchangeability. Ecological redundancy makes the mesofauna community much more resistant to environmental factors. The interaction type can change with environmental conditions. Competition prevails in soil communities outside their ecological optimum. Under these conditions, the community demonstrates the concentration of domination and decreased species richness due to the disappearance of closely related invertebrate species largely in biologically regressing groups.     

Structure of Littoral-zone Fish Communities in Relation to Habitat, Physical, and Chemical Gradients in a Southern Reservoir

How the distribution and abundance of organisms vary across environmental gradients can reveal factors important in structuring aquatic communities. We sampled the littoral-zone fish community in a large reservoir (Lake Texoma) on the Texas–Oklahoma (U.S.A.) border that has pronounced environmental gradients from up- to downlake and between major tributary arms. Our objective was to evaluate the predictability of the littoral-zone fish-community structure from a suite of environmental variables. A stepwise multiple-regression model, with environmental factors at independent variables, explained 64% of the variation in fish species richness across sample sites. The number of species was positively associated with water-column productivity and total Kjedahl nitrogen, and negatively associated with Secchi depth and benthic productivity. Canonical correspondence analysis, with environmental factors as independent variables, explained 63% of the variation in fish-community structure across sites. Equal proportions of the variation in community structure were explained by variables that have strong gradients within the reservoir (e.g., Secchi depth and water-column productivity) and those that represent local habitat variables (e.g., shoreline aspect and substrate type).     

Cell signals, cell contacts, and the organization of yeast communities

Even relatively simple species have evolved mechanisms to organize individual organisms into communities, such that the fitness of the group is greater than the fitness of isolated individuals. Within the fungal kingdom, the ability of many yeast species to organize into communities is crucial for their growth and survival, and this property has important impacts both on the economy and on human health. Over the last few years, studies of Saccharomyces cerevisiae have revealed several fundamental properties of yeast communities. First, strain-to-strain variation in the structures of these groups is attributable in part to variability in the expression and functions of adhesin proteins. Second, the extracellular matrix surrounding these communities can protect them from environmental stress and may also be important in cell signaling. Finally, diffusible signals between cells contribute to community organization so that different regions of a community express different genes and adopt different cell fates. These findings provide an arena in which to view fundamental mechanisms by which contacts and signals between individual organisms allow them to assemble into functional communities.