Inhibition of DNA synthesis in embryonic mouse retina as a result of gene interaction.

It has been shown by autoradiography using ³H-thymidine that 11-day mouse embryos doubly homozygous for the autosomal recessive genes fidget (gene symbol fi) and ocular retardation (or), have three to five times fewer labelled nuclei in their retina anlages as do normal (genotype +/+ +/+) embryos singly homozygous for fidget (+/+ $\text{fi}\text{fi}$) or ocular retardation (+/+ $\text{or}\text{or}$). In 11-day embryos of +/+ +/+, +/+ $\text{fi}\text{fi}$ and +/+ $\text{or}\text{or}$ genotypes the labelled nuclei are localized mainly in the inner zone of the retina anlage. However, in double homozygotes the indices of labelled nuclei were not significantly different in the inner and outer zones of the retina anlage. The retina anlage of 12-day double homozygote, $\text{fi}\text{fi}\text{or}\text{or}$, has practically no nuclei synthesizing DNA. Consequently, the mutant genes fi and or which prolong the G₁ period of the cell cycle in single homozygotes, act synergetically to stop DNA synthesis in the retina anlage cells of 12-day $\text{fi}\text{fi}\text{or}\text{or}$ embryos.     

DNA synthesis during the division cycle of three substrains of Escherichia coliBr

The relationship between chromosome replication and the bacterial division cycle has been examined in three substrains of Escherichia coli$\text{B}\text{r}$ obtained from different sources and designated $\text{B}\text{r}$ A, $\text{B}\text{r}$ F and $\text{B}\text{r}$ K. At growth rates greater than 1.0 doubling per hour (μ > 1.0), the time for a round of chromosome replication (C) was 42 minutes in all three substrains, but the time between the end of a round and cell division (D) was 22 minutes in $\text{B}\text{r}$ A, 16 minutes in $\text{B}\text{r}$ F and 14 minutes in $\text{B}\text{r}$ K. At slower growth rates C and D increased, but to significantly different extents in the three substrains. When μ = 0.5, C and D were approximately 80 and 40 minutes in $\text{B}\text{r}$ A, 60 and 20 minutes in $\text{B}\text{r}$ F, and 70 and 20 minutes in $\text{B}\text{r}$ K.As a consequence of the lengths of the C and D periods in the three stocks of E. coli$\text{B}\text{r}$, the patterns of chromosome replication during the division cycle differed. The most obvious difference was that E. coli$\text{B}\text{r}$ F and E. coli$\text{B}\text{r}$ K possessed periods devoid of DNA synthesis at both the beginning and the end of the division cycle during slow growth, whereas E. coli$\text{B}\text{r}$ A contained only one period devoid of DNA synthesis at the end of the cycle.     

The enzyme "aldehyde oxidase" is an iminium oxidase. Reaction with nicotine delta 1'(5') iminium ion.

The second of the two reaction steps involved in the metabolic transformation of (?)-nicotine to (?)-cotinine $\text{(}\text{3}\text{) (}\text{i.}\text{e.}$, the oxidation of the intermediate $\text{2}\text{)}$ is mediated mainly, if not solely, by the enzyme aldehyde oxidase (EC 1.2.3.1). Of the molecular species that constitute $\text{2}$, nicotine Δ^1′(5′) iminium ion $\text{(}\text{2a}\text{)}$ appears to serve as the substrate. The enzyme has a strong affinity for $\text{2a}$, as shown in a study on the inhibition of the oxidation of 3-(aminocarbonyl)-1-methylpyridinium chloride. This study gave a value of K_i = 6 μM; K_m = 2 μM (pH 7.4). Mainly in view of this finding, “iminium oxidase” seems to be a more adequate name than “aldehyde oxidase” for this enzyme.     

Ontogeny of the retina and optic nerve of Xenopus laevis: IV. Ultrastructural evidence of early ganglion cell differentiation

Ultrastructural evidence indicates that Xenopus retinal ganglion cell axons differentiate early, between stages 28 and 32. Light microscope studies indicated the presence of argryophilic material in the ventral retina and optic stalk of early embryos. Ultrastructural analysis of this region confirmed the presence of axons in the stalk and interstices of ventral retinal cells. Axons containing aligned microtubules and neurofilaments and elongated mitochondria with a paucity of other cell inclusions are found with increasing frequency in the ventral retina from stages 28 through $\text{33}\text{34}$. Central and dorsal regions of the retinas examined show little or no evidence of axons. A discrete, small bundle of axons is found in the optic stalk of stage 28 embryos and by stage $\text{30}\text{31}$ the number of axons in bundles has increased, suggesting early fasciculation. Between stages 28 and $\text{33}\text{34}$ (± 12 hr) extracellular space surrounding early axons diminishes and processes from neuroretinal cells in contact with axons surround developing axon bundles. The evidence presented suggests that axon initiation occurs in stages much earlier than previously reported. Other investigators have failed to detect ganglion cell differentiation prior to stage 32 possibly because they examined regions of the retina with few axons. Thus, experiments which rotate the retina in the orbit may have to be reevaluated since regenerating axons may use previously established pathways to organize and “home in” on tectal target cells.     

Control of pattern duplication in the retinotectal system of Xenopus. Induction of duplication in eye fragments by secondary cuts.

Following surgical ablation of the temporal (posterior) region of the eye-bud in stage 32 Xenopus frog embryos, the surviving nasal (anterior) fragment gradually rounds up to form a functional eye and orderly retinotectal map. Large nasal fragments ($\text{N}\text{-}\text{2}\text{3}$) assemble topographically normal maps, as does the majority of nasal “half-eye” fragments; small nasal fragments ($\text{N}\text{-}\text{1}\text{3}$), and a minority of nasal half-eye fragments, give a characteristic, mirror-symmetrical duplication map, similar (but not identical) to the “double-nasal” maps which develop when two nasal half-eyes are fused to form a frank NN double-eye. Ventral fragments and temporal fragments show similar size-dependent behavior, although their characteristic duplicate maps are topographically different from those of nasal fragments and more similar to the “double-ventral” and “double-temporal” maps of VV and TT recombinant eyes. Here we show that a simple surgical transection, applied either dorsally or ventrally to large nasal ($\text{N}\text{-}\text{2}\text{3}$) fragments so as to isolate a subregion of the tissue at the dorsum or venturm of the fragment, induces full or partial duplication of the nasal type in the majority of cases. The results refute the hypothesis that special properties at the eye-bud center, by their presence or absence in the fragment, control pattern duplication, and point instead toward interactions around the circumference of the eye-bud as a crucial parameter in determining positional information in the retina.     

Theory of biological similarity revisited

A unified theory of biological similarity is proposed, based on dimensional analysis (mass M, length L, diameter D, time T) and on three postulates: (1) the constancy of body density in terrestrial mammals; (2) the elastic similarity criterion (Rashevsky and McMahon) where $\text{L ∝ D}{}^{\mathrm{<mtext>2</mtext><mtext>3</mtext>}}$; and (3) the proportionality between length (L) and time (T), which is valid for relaxation oscillators. The postulated theoretical model provides a satisfactory correlation (r = 0·9937) between the predicted reduced exponent (b) and 96 allometric exponents (b) obtained from experimental data concerning a number of morphologic and physiologic parameters in animals of different size.The reformulation of a theory of biological similarity is posited mainly for the “internal” organization of organisms, whereas a “mechanical” similarity should be applied when inertial forces are present during animal locomotion (kinematics).Since biological rhythmicity is based on relaxation oscillators (T ∝ L), while in “mechanical” similarity the pendulum ($\text{T ∝ L}{}^{\mathrm{<mtext>1</mtext><mtext>2</mtext>}}$) is the paradigm of a self-sustained oscillation, these two are the limits of a continuous spectrum of similarity criteria, where the exponent of the time dimension (T) is the essential factor.The four-dimensional nature of biological space is discussed (W ∝ L⁴), and due to the postulated isometry of length (L) and time (T), periodic phenomena conform to $\text{T ∝ W}{}^{\mathrm{<mtext>1</mtext><mtext>4</mtext>}}$.     

The cell cycle and retinal histogenesis fidget mutant mice.

The autoradiographic method using [³H]thymidine has shown that the autosomal recessive mutant gene fidget (gene symbol fi) prolonging the presynthetic period of the cell cycle in the retinal anlage in homozygotes retards the transition of retinal cells to the differentiated state. Some retinal cells of normal embryos (+/+) start their transition to the differentiated state on the 11th day of embryogenesis, while in $\text{fi}\text{fi}$ embryos this process starts only on the 12th day. An active transition of retinal cells to the differentiated state especially in the peripheral zone of the mutant retina takes place 2 days later as compared to normal embryos. The number of differentiating cells in the retina of mutants at the stages of development studied is considerably lower as compared to the norm. The analysis of the cell cycle parameters in 15-day embryos has shown that in the mutants the retina is less mature as compared to +/+ embryos. The sequence of transition of various cell types to the differentiated state in the retina of $\text{fi}\text{fi}$ embryos is the same as in the norm. Gene fidget seems to interfere with proliferative rather than critical (quantal) cell cycles in the developing mouse retina.     

Diminished inhibition of succinate-cytochrome c reductase activity of resolved reductase complex by thenoyltrifluoroacetone in the presence of antimycin.

Antimycin, when added to resolved succinate-cytochrome $\text{c}$ reductase complex in amounts sufficient to partially inhibit succinate-cytochrome $\text{c}$ reductase activity, causes a decrease in inhibition of the residual succinate-cytochrome $\text{c}$ reductase activity by 2-thenoyltrifluoroacetone. Antimycin has no effect on the inhibition of succinate-ubiquinone reductase activity by 2-thenoyltrifluoroacetone. We propose that antimycin increases the steady state concentration of ubisemiquinone in the reductase complex, and that 2-thenoyltrifluoracetone is competitive with ubisemiquinone.     

Transient state isoelectric focusing: effects of zone load and carrier ampholyte concentration on the kinetics of defocusing and refocusing in sucrose density gradients

The kinetics of focusing, defocusing, and refocusing of l-histidyl-l-tyrosine in a sucrose density gradient have been studied utilizing a special apparatus for repetitive scanning of the isoelectric focusing column, employing uv absorption optics and a digital data acquisition system. Starting from a uniform or triangular concentration profile, the band is “focused” and a nearly linear pH gradient is formed during initial focusing. The electrical field is then abolished and free diffusion occurs. The electrical field is then reapplied (“refocusing”) and the band is allowed to sharpen, presumably reapproaching a steady state. The band width was measured quantitatively as the second moment about the mean (square of the standard deviation, σ²). In theory, measurements of σ² versus time permit the estimation of the apparent diffusion coefficient (D) and the isoelectric focusing parameter (pE). If the electrical field strength E and the pH gradient, $\text{d(}\text{pH}\text{)}\text{dx}$, were also measured, then one could calculate the slope of the pH mobility curve of the protein $\text{dM}\text{d(}\text{pH}\text{)}$ evaluated at the isoelectric point. D can be measured during the defocusing stage, and $\text{pE,}\text{D}\text{pE}\text{,}\text{or}\text{D}$ can be measured during focusing or refocusing. Several limitations and difficulties in the verification of this theory have been encountered: First, the apparent diffusion coefficient depends on zone load in approximately a linear fashion. Accordingly, it is necessary to measure D at several zone loads, and then extrapolate to zero load by linear regression techniques. Second, the ampholyte concentration has a marked effect on both D and pE. Here we have no a priori reason to extrapolate to zero ampholyte concentration. Also, at present we have no satisfactory method for measurement of E. These preliminary studies should be helpful in indicating further directions for experimental refinement and for generalization of theory.     

An ultrastructural examination of everted rat jejunum

Male, albino, Sprague-Dawley rats were sacrificed by cervical separation. Segments of jejunum were excised, everted and examined with the electron microscope. Examination of tissue fixed immediately after eversion revealed the following changes as compared to non-everted segments fixed $\text{in}$$\text{situ}$ and $\text{in}$$\text{vitro}$: 1) an increase in the length of microvilli from (mean ± S. E.) 0.991 ± 0.011μ for normal tissue to 1.389 ± 0.023μ for everted tissue, 2) an increase in width of microvilli from (mean ± S. E.) 0.089 ± 0.001μ for normal tissue to 0.097 ± 0.001μ for everted tissue, 3) an increase in length and number of lateral membrane interdigitations, and 4) the appearance of intercellular “lakes” in the lateral spaces. The above changes are in those structures hypothesized to be involved with salt and water transport across epithelia and may reflect altered transport rates $\text{in}$$\text{vitro}$ as compared to $\text{in}$$\text{vivo}$.     

The consequences of contact pressure in phyllotaxis

To determine the consequences of contact pressure in phyllotaxis, a mathematical model is constructed in which a leaf distribution is represented by a point lattice of n + 1 lattice points at equal intervals on a helix wound around a cylinder. The model is normalized by taking the girth of the cylinder as 1 and by measuring time T in plastochrones, so that n = [T]. r stands for the normalized internode distance (component of the distance between two consecutive lattice points that is parallel to the axis of the cylinder). d stands for the divergence (fraction of a turn between consecutive lattice points). It is assumed that r is a monotonic decreasing function of T such that r(T) → 0 as T → ∞. Contact pressure is represented by the assumption that the minimum geodesic distance between lattice points is maximized. It is shown that if (p, q), with p < q, is the contact phyllotaxis determined when contact pressure first becomes effective, then the continuation of contact pressure requires that the advance to higher phyllotaxis as r decreases must proceed via successive pairs of consecutive terms of the Fibonacci sequence generated by the numbers p and q, namely, p, q, p + q, p + 2q, 2p + 3q, …. The divergence, starting from some value $\text{d =}\text{1}\text{t}\text{+}\text{1}\text{a}{}_2\text{+ … +}\text{1}\text{(a}{}_{\mathrm{n}}\text{+ x)}$ determined by p and q converges to an ideal angle $\text{1}\text{t}\text{+}\text{1}\text{a}{}_2\text{+ … +}\text{1}\text{a}{}_{\mathrm{n}}\text{+}\text{1}\text{τ}$, where τ is the golden section. A necessary and sufficient condition for the ideal angle to be $\text{1}\text{2}\text{+}\text{1}\text{τ}\text{= τ}{}^{\mathrm{?2}}$ is that the p and q of the initial contact phyllotaxis be consecutive Fibonacci numbers of the sequence 1, 2, 3, 5, 8, …. It is proved that a sufficient condition for convergence to the ideal angle τ^?2 of normal phyllotaxis is that contact pressure begin before T = 5 or before $\text{r <}\text{3}\text{38}\text{1}\text{2}$ with d initially between $\text{1}\text{3}$ and $\text{1}\text{2}$.     

Carbohydrate structure and serological behaviour of "antifreeze" glycoproteins from an Antarctic fish.

The carbohydrate moiety of the “antifreeze” glycoprotein from $\text{Trematomus borchgrevinki}$ was found to be β-D-galactosyl 1–3 N-acetyl galactosamine by gasliquid chromatography. The glycoprotein inhibited anti-T antibody from human serum and $\text{Arachis hypogoea}$ lectin, but was inactive against $\text{Vicia graminea}$. Native “antifreeze” glycoprotein did not inhibit the agglutinins from $\text{Helix pomatia}$ or $\text{Cepaea hortensis}$, although after Smith degradation showed a strong inhibition towards them. Inhibition of the latter agglutinin demonstrates the carbohydrate-protein linkage to be α-linked. The presence of the Thomsen-Friedenreich antigen (T-antigen) on the “antifreeze” glycoprotein and its relation to tumour cell surfaces is briefly discussed.     

X-ray diffraction analysis of crystals of bovine platelet factor 4

Bovine platelet factor 4 has been crystallized by “vapor dilution” in space group P2₁2₁2₁, $\text{a = 63.7}\text{A}\text{?}\text{, b = 66.7}\text{A}\text{?}\text{, c = 80.5}\text{A}\text{?}$, with four molecules, each 9505 M_r, in the asymmetric unit. The crystals diffract X-rays to better than 2.8 Å resolution.     

Effect of E. coli endotoxin on the structure-function of fatty acid synthetase lipoprotein

The lipoprotein structure of the fatty acid synthetase complex from Ceratitis capitata has been used as a model to $\text{val}\text{i}$ date the claim that phospholipids from membranes assume a $\text{signif}\text{i}$ cant role in the cell-endotoxin interactions. The enzyme-complex was exposed to a ¹⁴C-lipopolysaccharide preparation and the $\text{inte}\text{r}$ action was followed by a) circular dichroism spectra, b) enzyme activity and c) gel filtration chromatography. It should be $\text{emph}\text{a}$ sized that the E. coli endotoxin modifies all these properties of the enzyme complex and that a model involving phospholipids and phase transitions has been proposed to account for these $\text{intera}\text{c}$ tions.     

Crystals of glutamine synthetase from Escherichia coli.

Further details are given of crystals of glutamine synthetase prepared from Escherichia coli. Crystals of two kinds have been observed: (1) rhombic dodecahedra which correspond to the morphology of the crystals studied by Eisenberg et al. (1971) (and which were found by them to contain dodecamers), and (2) rhombohedra, reported here. Cell dimensions and packing considerations led to the consideration of two possible structures for the rhombohedral crystals. These we have called the “T = 7 structure” and the “B.C.C. structure”. The T = 7 structure would be related to that derived by Eisenberg and would contain dodecamers, but is inconsistent with our X-ray intensity data. The B.C.C. structure is considered more probable. It is built of cubic octomers or square tetramers. Electron micrographs of our glutamine synthetase preparations show a wide variety of aggregates, including dodecamers and tetramers. The unit cell dimensions of our crystals are $\text{a = 140 ± 2}\text{A}\text{̊}$, and $\text{c = 148 ± 2}\text{A}\text{̊}$. The Laue symmetry group is $\text{3}\text{̄}$m P3₁.     

Energy transfer and molecular switching II. Muscle contraction and enzymatic reactions

In Part I (Barrett, 1981), the concept of chemical parametric excitation was reviewed and applied to the process of nerve action potential excitation and regeneration. In the present paper, the chemical reactions involved in muscle contraction and the enzymatic reaction are examined and shown to be examples of chemical parametric excitation.It is demonstrated that in a model biochemical scheme for an enzymatic reaction, the enzyme is activated from a state, X, to a state, $\text{X}{}^1$, and in this activated state pumps the reaction parametrically. The concept of enzyme is identified with an excited state or state of disequilibrium permitting a release of energy during the dissipation, $\text{X}{}^1\text{→X}$, in the enzymatic reaction, which is powered by the release of energy in the return to the unexcited state X. The demonstration of parametric excitation relations for chemical systems indicates an explanation for the directionality of energy flow and designates an energy pumping role for an enzyme.In muscle contraction, the role of $\text{X}{}^1$ is played by actomyosin and Ca²⁺, and the enzymatic reaction is the hydrolysis of ATP. The release of energy caused by this hydrolysis reaction brings about the conformational changes underlying muscle contraction.     

Effects of cations upon chloroplast membrane subunit interactions and excitation energy distribution

When isolated chloroplasts from mature pea (Pisum sativum) leaves were treated with digitonin under “low salt” conditions, the membranes were extensively solubilized into small subunits (as evidenced by analysis with small pore ultrafilters). From this solubilized preparation, a photochemically inactive chlorophyll · protein complex (chlorophyll $\text{a}\text{b}$ ratio, 1.3) was isolated. We suggest that the detergent-derived membrane fragment from mature membranes is a structural complex within the membrane which contains the light-harvesting chlorophyll $\text{a}\text{b}$ protein and which acts as a light-harvesting antenna primarily for Photosystem II.Cations dramatically alter the structural interaction of the light-harvesting complex with the photochemically active system II complex. This interaction has been measured by determining the amount of protein-bound chlorophyll b and Photosystem II activity which can be released into dispersed subunits by digitonin treatment of chloroplast lamellae. When cations are present to cause interaction between the Photosystem II complex and the light-harvesting pigment · protein, the combined complexes pellet as a “heavy” membranous fraction during differential centrifugation of detergent treated lamellae. In the absence of cations, the two complexes dissociate and can be isolated in a “light” submembrane preparation from which the light-harvesting complex can be purified by sucrose gradient centrifugation.Cation effects on excitation energy distribution between Photosystems I and II have been monitored by following Photosystem II fluorescence changes under chloroplast incubation conditions identical to those used for detergent treatment (with the exception of chlorophyll concentration differences and omission of detergents). The cation dependency of the pigment · protein complex and Photosystem II reaction center interactions measured by detergent fractionation, and regulation of excitation energy distribution as measured by fluorescence changes, were identical. We conclude that changes in substructural organization of intact membranes, involving cation induced changes in the interaction of intramembranous subunits, are the primary factors regulating the distribution of excitation energy between Photosystems II and I.     

The influence of phospholipid polar groups on gramicidin channels

The influence of well-defined changes in the polar part of phospholipid molecules on the properties of black lipid membranes was studied using a series of phospholipids with identical hydrocarbon chains, but systematically changed polar groups. The hydrocarbon tails of the lipids under study were composed of 1,2-dipentadecylmethylidene glycerol. The polar parts differed in the degree of $\text{N-}\text{methylation}$ and comprised phosphocholine, $\text{-N,N-}\text{dimethylethanolamine}$, $\text{-N-}\text{methylethanolamine}$ and ethanolamine. Stable black lipid membranes could be formed with the solvents octane, decane, dodecane, tetradecane and hexadecane. The properties of gramicidin-induced single ionic channels changed systematically in membranes from the phosphatidylcholine to the phosphatidylethanolamine analogue, as indicated by an increase in the amplitude A of the unit conductance step and a decrease in the average channel life-time or duration τ. The series of τ-values was opposite to that expected from hydrocarbon thickness (specific capacitance). It is suggested that the surface tension γ is a relevant parameter for the prediction of τ-values.