Spatio-temporal variation in coral recruitment at different scales on Heron Reef, southern Great Barrier Reef

 Recruitment of scleractinian corals on settlement plates at Heron Island, Great Barrier Reef, was examined over four years (September 1991–September 1995) to quantify spatio-temporal patterns at different scales and to assess post settlement mortality. Recruitment was dominated by pocilloporid corals which accounted for 80.1% of the 8627 spat counted, whereas non-isoporan acroporids represented only 16.4%. Poritids, faviids and isoporan acroporids rarely recruited to the plates (3.5%), despite their obvious abundance as adults on the reef. Recruitment patterns on the plates indicate strong space-time interactions as evidenced by patchy recruitment of both pocilloporid and acroporid spat. Interactions were found between space (on the scale of 10² m, i.e. sites within zones, and 10¹ m, i.e. racks within sites) and time (on the scale of years) for pocilloporids and between space (on the scale of 10³ m, i.e. zones, and 10² m) and time (on the scale of years) for acroporids. Post-recruitment mortality of acroporid spat in the period 3–10 months after their major spawning was dependent on their initial recruitment density, but pocilloporid mortality was either independent of initial recruitment density or, more likely, obscured by additional recruitment of pocilloporids to plates between late February and September. High rates of recruitment and growth by other sessile organisms, particularly bryozoans and oysters, appear to result in increased post-recruitment mortality and limit recruitment of scleractinian corals on settlement plates. The work reinforces an emerging picture that coral recruitment patterns are determined by mechanisms that manifest over a large range of spatial scales. Accepted: 1 September 1997     

Effects of artificial settlement plate materials and methods of deployment on the sessile epibenthic community development in a tropical environment

The choice of substrata and the methods of deployment in analyses of settlement in benthic communities are often driven by the cost of materials and their local availability, and comparisons are often made between studies using different methodologies. The effects of varying artificial substratum, size of replicates and method of deployment were determined on a shallow reef in Eilat, Israel, while the effect of size of replicates was also investigated on a shallow reef in Sharm El Sheikh, Egypt. When statistical power was high enough, that is, when sufficient numbers of settlers were recorded, significant differences were found between materials used, tile size and methods of deployment. Significant differences were detected in total coral settlement rates and for the two dominant taxonomic groups, acroporids and pocilloporids. Standardisation of tile materials, dimensions, and method of deployment is needed for comparison between coral and other epibiont settlement studies. However, a greater understanding of the effects of these experimental variables on settlement processes may enable retrospective comparisons between studies utilising a range of materials and methods.     

Poor Performance of Corals Transplanted onto Substrates of Short Durability

Worldwide, coral reefs are degrading due to increasing anthropogenic pressures. Yet, management of reefs still falls short of effectively addressing these threats, and active restoration methods are increasingly being called for. Coral transplantation is frequently advocated as a possible means of coral reef rehabilitation. Fragments produced in coral nurseries or farms have been proposed as a potential source for transplantation, and culture media (inexpensive but non‐durable materials such as wood or bamboo) may serve as transplantation substrate if placed directly in the reef. However, the performance of coral transplants attached to such substrates has not been examined yet. Here, the long‐term survival of transplants attached to bamboo substrates is reported. A total of 6,164 fragments of 4 coral species (Acroporids and Pocilloporids) were monitored for up to 20 months at three sites in North Sulawesi/Indonesia. Bamboo failed as a suitable inexpensive substrate in at least two of the three sites examined. Mortality of transplants 2 years after transplantation was high in three of the four species (67–95%) and was partially linked to substrate disintegration. The results show that, in places were currents or waves threaten to dislocate transplants, a higher effort needs to be directed at a strong and durable attachment of transplanted corals.     

Density-associated recruitment mediates coral population dynamics on a coral reef

Theory suggests that density-associated processes can modulate community resilience following declines in population size. Here, we demonstrate density-associated processes in two scleractinian populations on the outer reef of Moorea, French Polynesia, that are rapidly increasing in size following the effects of two catastrophic disturbances. Between 2006 and 2010, predation by the corallivorous crown-of-thorns sea star reduced coral cover by 93 %; in 2010, the dead coral skeletons were removed by a cyclone, and in 2011 and 2012, high coral recruitment initiated population recovery. Coral recruitment was associated with coral cover, but the relationship differed between two coral genera that are almost exclusively broadcast spawners in Moorea. Acroporids recruited at low densities, and the density of recruits was positively associated with cover of Acropora, whereas pocilloporids recruited at high densities, and densities of their recruits were negatively associated with cover of Pocillopora. Together, our results suggest that associations between adult cover and density of both juveniles and recruits can mediate rapid coral community recovery after large disturbances. The difference between taxa in sign of the relationships between recruit density and coral cover indicate that they reflect contrasting mechanisms with the potential to mediate temporal shifts in taxonomic composition of coral communities.     

Macroalgae Inhibits Larval Settlement and Increases Recruit Mortality at Ningaloo Reef,Western Australia

Globally, many coral reefs are degraded and demonstrate reduced coral cover and increased macroalgal abundance. While negative correlations between macroalgae and coral recruitment have commonly been documented, the mechanisms by which macroalgae affects recruitment have received little attention. Here we examined the effect of macroalgae on larval settlement and the growth and survival of coral recruits, in a field experiment over nine months. Exclusion treatments were used to manipulate herbivory and macroalgal biomass, while settlement tiles measured coral settlement and survival. After nine months the volume of macroalgae was up to 40 times greater in the caged treatments than in controls and the settlement of coral larvae on the undersides of tiles within caged plots was 93% lower than in the uncaged treatments. The growth and survival of coral recruits was also severely reduced in the presence of macroalgae: survival was 79% lower in caged treatments and corals were up to 58% smaller with 75% fewer polyps. These data indicate that macroalgae has an additive effect on coral recruitment by reducing larval settlement and increasing recruit mortality. This research demonstrates that macroalgae can not only inhibit coral recruitment, but also potentially maintain dominance through a positive feedback system.     

Gametogenesis and reproductive pattern of the reef-building coral Acropora millepora in northwestern Philippines

ABSTRACT

Coral populations continue to decline in many regions because of natural and anthropogenic disturbances; and the persistence of coral populations mainly relies on natural recruitment through coral reproduction. However, studies on the reproduction of many important reef-building coral species in one of the most biodiverse region, the Coral Triangle, are very limited. Here, we investigated the reproductive biology of the coral Acropora millepora in Bolinao-Anda Reef Complex, northwestern Philippines from February 2014 to March 2015, through in situ assessment of gamete maturity, histological examination of gamete development and ex situ spawning observations. Results showed that A. millepora exhibited an annual gametogenic cycle. Formation of oocytes took place within 8 months, whereas spermatocytes developed in 3 months before the gamete release. Abundance and size of eggs in A. millepora were greatest during the months nearest to the spawning period, which coincides with the rapid increase in sea surface temperature. Ex situ broadcast spawning occurred around the months of February–March, which suggests an extended spawning pattern. Results provide additional information on coral reproduction in the region and reveal the potential of A. millepora in providing coral propagules for the replenishment and recovery of degraded coral populations.     

Shedding new light on scleractinian coral recruitment

Studies of the distribution of scleractinian coral recruits within stacks of settlement plates at Orpheus Island and Lizard Island revealed that corals are recruited almost exclusively on the lower surfaces of the settlement plates. The absence of recruitment on the upper surfaces of the plates is attributed to the observed high levels of sediment on these surfaces. All hermatypic coral spat were found near the edge of the settlement plates, whereas ahermatypic corals were located towards the center. Growth and survivorship of hermatypic corals were dependent on the position of attachment, decreasing with distance from the edges of the plates. Survivorship of ahermatypic corals was uniformly high. Light levels on the lower surfaces of the plates within the stacks were shown to decay asymptotically as a function of distance from the plate edge. There was a highly significant non-linear relationship between relative light intensity on the settlement plates and the positions of coral spat. In the absence of evidence for selective hydrodynamic deposition of spat, these results suggest that light intensity is the most important factor in determining the position of attachment of coral spat on the underside of these plates.     

Coral recruitment: patterns and processes determining the dynamics of coral populations

Coral recruitment describes the addition of new individuals to populations, and it is one of the most fundamental demographic processes contributing to population size. As many coral reefs around the world have experienced large declines in coral cover and abundance, there has been great interest in understanding the factors causing coral recruitment to vary and the conditions under which it can support community resilience. While progress in these areas is being facilitated by technological and scientific advances, one of the best tools to quantify recruitment remains the humble settlement tile, variants of which have been in use for over a century. Here I review the biology and ecology of coral recruits and the recruitment process, largely as resolved through the use of settlement tiles, by: (i) defining how the terms ‘recruit’ and ‘recruitment’ have been used, and explaining why loose terminology has impeded scientific advancement; (ii) describing how coral recruitment is measured and why settlement tiles have value for this purpose; (iii) summarizing previous efforts to review quantitative analyses of coral recruitment; (iv) describing advances from hypothesis-driven studies in determining how refuges, seawater flow, and grazers can modulate coral recruitment; (v) reviewing the biology of small corals (i.e. recruits) to understand better how they respond to environmental conditions; and (vi) updating a quantitative compilation of coral recruitment studies extending from 1974 to present, thus revealing long-term global declines in density of recruits, juxtaposed with apparent resilience to coral bleaching. Finally, I review future directions in the study of coral recruitment, and highlight the need to expand studies to deliver taxonomic resolution, and explain why time series of settlement tile deployments are likely to remain pivotal in quantifying coral recruitment.     

Biogeography and Change among Regional Coral Communities across the Western Indian Ocean

Coral reefs are biodiverse ecosystems structured by abiotic and biotic factors operating across many spatial scales. Regional-scale interactions between climate change, biogeography and fisheries management remain poorly understood. Here, we evaluated large-scale patterns of coral communities in the western Indian Ocean after a major coral bleaching event in 1998. We surveyed 291 coral reef sites in 11 countries and over 30° of latitude between 2004 and 2011 to evaluate variations in coral communities post 1998 across gradients in latitude, mainland-island geography and fisheries management. We used linear mixed-effect hierarchical models to assess total coral cover, the abundance of four major coral families (acroporids, faviids, pocilloporids and poritiids), coral genus richness and diversity, and the bleaching susceptibility of the coral communities. We found strong latitudinal and geographic gradients in coral community structure and composition that supports the presence of a high coral cover and diversity area that harbours temperature-sensitive taxa in the northern Mozambique Channel between Tanzania, northern Mozambique and northern Madagascar. Coral communities in the more northern latitudes of Kenya, Seychelles and the Maldives were generally composed of fewer bleaching-tolerant coral taxa and with reduced richness and diversity. There was also evidence for continued declines in the abundance of temperature-sensitive taxa and community change after 2004. While there are limitations of our regional dataset in terms of spatial and temporal replication, these patterns suggest that large-scale interactions between biogeographic factors and strong temperature anomalies influence coral communities while smaller-scale factors, such as the effect of fisheries closures, were weak. The northern Mozambique Channel, while not immune to temperature disturbances, shows continued signs of resistance to climate disturbances and remains a priority for future regional conservation and management actions.     

Coral transplantation as an aid to reef rehabilitation: evaluation of a case study in the Maldive Islands

As part of a study of reef rehabilitation, whole coral colonies (primarily Acropora, Pocillopora, Porites, Eavia and Favites) were transplanted and cemented in place onto three approximately 20 m² areas of Armorflex concrete mats on a 0.8–1.5 m deep reef-flat in the Maldives which had been severely degraded by coral mining. Growth, in situ mortality, and losses from mats due to wave action of a total of 530 transplants were monitored over 28 months. Natural recruitment of corals to both the transplanted Armorflex areas and concrete mats without transplants was also studied. Overall survivorship of corals 28 moths after transplantation was 51%. Most losses of transplants due to wave action occurred during the first 7 months when 25% were lost, with only a further 5% of colonies being lost subsequently. Within 16 months most colonies had accreted naturally to the concretemats. Thirty-two percent of transplants which remained attached died with Acropora hyacinthus and Pocillopora perrucosa having the highest mortality rates (approx. 50% nortality over two years) and Porites lobata and P. lutea the lowest (2.8 and 8.1% mortality respectively over two years). Growth rates were very variable with a quarter to a third of transplants showing negative growth during each inter-survey period. Acropora hyacinthus, A. cytherea and A. divaricata transplants had the highest growth rates (colony mean linear radial extension 4.15–5.81 cm y^-1), followed by Pocillopora verrucosa (mean 2.51 cm y^-1). Faviids and poritids had lowest growth rates. Favia and Favites showed the poorest response to transplantation whilst Acropora divaricata, which combined a high growth rate with relatively low mortality, appeared particularly amenable to transplantation. Natural recruitment did not differ significantly between concrete mats with and without transplanted corals. Visible recruits wer first recorded 10 months after emplacement of the mats and were predominantly Acropora and Pocillopora. On near vertical surfaces their density was almost 18 m^-2. Recruits grew fast producing many 20–30 cm diameter colonies on the mats within 3.5 years. Growth and survival of transplants are compared with results of transplantation studies in other locations. We conclude: (1) species transplanted should be selected with care as certain species are significantly more amenable than others to transplantation, (2) the choice of whether fragments or whole colonies are transplanted may profoundly influence survival, (3) considerable loss of transplants is likely from higher energy sites whatever method of attachment, (4) transplantation should, in general, be undertaken only if recovery following natural recruitment is unlikely.     

Effects of monsoon-driven wave action on coral reefs of Guam and implications for coral recruitment

Benthic cyanobacteria can respond rapidly to favorable environmental conditions, overgrow a variety of reef organisms, and dominate benthic marine communities; however, little is known about the dynamics and consequences of such cyanobacterial blooms in coral reef ecosystems. In this study, the benthic community was quantified at the time of coral spawnings in Guam to assess the substrate that coral larvae would encounter when attempting settlement. Transects at 9, 18, and 25-m depths were surveyed at two reef sites before and after heavy wave action driven by westerly monsoon winds. Communities differed significantly between sites and depths, but major changes in benthic community structure were associated with wave action driven by monsoon winds. A shift from cyanobacteria to crustose coralline algae (CCA) accounted for 44% of this change. Coral recruitment on Guam may be limited by substrate availability if cyanobacteria cover large areas of the reef at the time of settlement, and consequently recruitment may in part depend upon wave action from annual monsoon winds and tropical storms which remove cyanobacteria, thereby exposing underlying CCA and other substrate suitable for coral settlement.     

Indirect consequences of fishing: reduction of coralline algae suppresses juvenile coral abundance

Removing predatory fishes has effects that cascade through ecosystems via interactions between species and functional groups. In Kenyan reef lagoons, fishing-induced trophic cascades produce sea urchin-dominated grazing communities that greatly reduce the overall cover of crustose coralline algae (CCA). Certain species of CCA enhance coral recruitment by chemically inducing coral settlement. If sea urchin grazing reduces cover of settlement-inducing CCA, coral recruitment and hence juvenile coral abundance may also decline on fished reefs. To determine whether fishing-induced changes in CCA influence coral recruitment and abundance, we compared (1) CCA taxonomic compositions and (2) taxon-specific associations between CCA and juvenile corals under three fisheries management systems: closed, gear-restricted, and open-access. On fished reefs (gear-restricted and open-access), abundances of two species of settlement-inducing CCA, Hydrolithon reinboldii and H. onkodes, were half those on closed reefs. On both closed and fished reefs, juveniles of four common coral families (Poritidae, Pocilloporidae, Agariciidae, and Faviidae) were more abundant on Hydrolithon than on any other settlement substrate. Coral densities were positively correlated with Hydrolithon spp. cover and were significantly lower on fished than on closed reefs, suggesting that fishing indirectly reduces coral recruitment or juvenile success over large spatial scales via reduction in settlement-inducing CCA. Therefore, managing reefs for higher cover of settlement-inducing CCA may enhance coral recruitment or juvenile survival and help to maintain the ecological and structural stability of reefs.     

Habitat selection and the colonization of new territories by Chromis viridis

The settlement and recruitment patterns of Chromis viridis were followed during three consecutive seasons along the reefs of Eilat, Red Sea. The findings, based on intensive field surveys and a translocation experiment, indicated a strong and repeatable preference for some, but not other, colonies of the branching coral Acropora eurystoma; with significantly more larvae settling onto preferred colonies that house conspecific adults and juveniles. Furthermore, these findings showed that, given high recruitment rates, settlement‐site selection could drive migration by adults and older juveniles. As only some C. viridis schools received direct settlement, it was suggested that settlement‐driven migration is responsible for the replenishment of those schools that do not receive settlement and to the colonization of previously unoccupied coral colonies.     

Paris Agreement could prevent regional mass extinctions of coral species

Coral reef ecosystems are expected to undergo significant declines over the coming decades as oceans become warmer and more acidic. We investigate the environmental tolerances of over 650 Scleractinian coral species based on the conditions found within their present-day ranges and in areas where they are currently absent but could potentially reach via larval dispersal. These “environmental envelopes” and connectivity constraints are then used to develop global forecasts for potential coral species richness under two emission scenarios, representing the Paris Agreement target (“SSP1-2.6”) and high levels of emissions (“SSP5-8.5”). Although we do not directly predict coral mortality or adaptation, the projected changes to environmental suitability suggest considerable declines in coral species richness for the majority of the world's tropical coral reefs, with a net loss in average local richness of 73% (Paris Agreement) to 91% (High Emissions) by 2080–2090 and particularly large declines across sites in the Great Barrier Reef, Coral Sea, Western Indian Ocean, and Caribbean. However, at the regional scale, we find that environmental suitability for the majority of coral species can be largely maintained under the Paris Agreement target, with 0%–30% potential net species lost in most regions (increasing to 50% for the Great Barrier Reef) as opposed to 80%–90% losses under High Emissions. Projections for subtropical areas suggest that range expansion will give rise to coral reefs with low species richness (typically 10–20 coral species per region) and will not meaningfully offset declines in the tropics. This work represents the first global projection of coral species richness under oceanic warming and acidification. Our results highlight the critical importance of mitigating climate change to avoid potentially massive extinctions of coral species.     

An appraisal of methods used in coral recruitment studies

 A new method for attaching individual artificial settlement plates directly to the reef surface using small stainless steel base plates is described. Recruitment of corals to settlement plates attached to the reef substratum and to steel mesh racks is compared. The effects of differences in depth, settlement plate angle, and local topography on recruitment of corals were also investigated. No significant difference in mean recruit density was found between settlement plates deployed using the two attachment methods. Small differences in depth and plate angle among replicate plates explained less than 6% of the variability in coral recruitment on replicate settlement plates. The direct-attachment method is less obtrusive, more cost and time efficient, and settlement plates can be deployed at precise locations. Additionally, because settlement plates are deployed individually rather than grouped on racks or frames, the direct-attachment method avoids complications associated with assumptions of independence implicit in most statistical procedures. Accepted: 24 November 1999     

Survival and settlement success of coral planulae: independent and synergistic effects of macroalgae and microbes

Restoration of degraded coral reef communities is dependent on successful recruitment and survival of new coral planulae. Degraded reefs are often characterized by high cover of fleshy algae and high microbial densities, complemented by low abundance of coral and coral recruits. Here, we investigated how the presence and abundance of macroalgae and microbes affected recruitment success of a common Hawaiian coral. We found that the presence of algae reduced survivorship and settlement success of planulae. With the addition of the broad-spectrum antibiotic, ampicillin, these negative effects were reversed, suggesting that algae indirectly cause planular mortality by enhancing microbial concentrations or by weakening the coral’s resistance to microbial infections. Algae further reduced recruitment success of corals as planulae preferentially settled on algal surfaces, but later suffered 100% mortality. In contrast to survival, settlement was unsuccessful in treatments containing antibiotics, suggesting that benthic microbes may be necessary to induce settlement. These experiments highlight potential complex interactions that govern the relationships between microbes, algae and corals and emphasize the importance of microbial dynamics in coral reef ecology and restoration. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Recruitment,mortality, and resilience potential of scleractinian corals at Eilat,Red Sea

Events of mass coral bleaching and mortality have increased in recent decades worldwide, making coral recruitment more important than ever in sustaining coral-reef ecosystems and ensuring their resilience. During the last four decades, the coral reefs of Eilat have undergone severe deterioration due to both anthropogenic and natural causes. Recruitment failure has been frequently suggested as one of the main mechanisms underlying this deterioration. Here we assess the demographic replenishment and resilience potential of the local reefs, i.e., the potential for new sexually derived corals to recruit and exceed the community’s mortality rate. We present a detailed analysis of coral community demography, obtained by means of high-resolution photographic monitoring of permanently marked plots. Coral spats as small as 1 mm were documented and the detailed dynamics of coral recruitment and mortality were recorded, in addition to other common ecological measurements. The cumulative quantity of recruited individuals was twofold to fivefold higher than total mortality. The most significant predictor variable for coral recruitment among all ecological parameters measured was the available substrate for settlement, and the survival of recruited corals was correlated with reef structural complexity. Two consecutive annual reproductive seasons (June–September of each year) with high recruitment rates were monitored. Combined with the high survival of recruits and the increase in coral live cover and abundance, the findings from this study indicate an encouraging potential for recovery of these reefs.

     

Ocean acidification impacts multiple early life history processes of the Caribbean coral Porites astreoides

Ocean acidification (OA) refers to the increase in acidity (decrease in pH) of the ocean's surface waters resulting from oceanic uptake of atmospheric carbon dioxide (CO₂). Mounting experimental evidence suggests that OA threatens numerous marine organisms, including reef‐building corals. Coral recruitment is critical to the persistence and resilience of coral reefs and is regulated by several early life processes, including: larval availability (gamete production, fertilization, etc.), larval settlement, postsettlement growth, and survival. Environmental factors that disrupt these early life processes can result in compromised or failed recruitment and profoundly affect future population dynamics. To evaluate the effects of OA on the sexual recruitment of corals, we tested larval metabolism, larval settlement, and postsettlement growth of the common Caribbean coral Porites astreoides at three pCO₂ levels: ambient seawater (380 μatm) and two pCO₂ scenarios that are projected to occur by the middle (560 μatm) and end (800 μatm) of the century. Our results show that larval metabolism is depressed by 27% and 63% at 560 and 800 μatm, respectively, compared with controls. Settlement was reduced by 42–45% at 560 μatm and 55–60% at 800 μatm, relative to controls. Results indicate that OA primarily affects settlement via indirect pathways, whereby acidified seawater alters the substrate community composition, limiting the availability of settlement cues. Postsettlement growth decreased by 16% and 35% at 560 and 800 μatm, respectively, relative to controls. This study demonstrates that OA has the potential to negatively impact multiple early life history processes of P. astreoides and may contribute to substantial declines in sexual recruitment that are felt at the community and/or ecosystem scale.     

In situ observation of coral recruitment using fluorescence census techniques

A novel method for the observation of recruitment of fluorescent taxa was developed combining fluorescence census techniques with conventional microscopic examination. The new technique was used to observe coral recruitment on natural limestone plates over a period of 4 months on Meras reef, North Sulawesi, Indonesia. During this period, fluorescence photos were taken of each plate on a weekly basis. This allowed for the detailed observation of fluorescent coral recruitment in-situ. After specific time periods, the plates were sampled and the detected recruits were categorized to family level using their skeletal structure. The fluorescence census technique detected 97.6% of all coral recruits bigger than one millimetre in diameter. The diameter measurements of the recruit's skeletons were used to estimate growth rates at family level. Using the photo series method, the time of settlement of fluorescent recruits on the plates was determined. The results showed roughly linear diameter growth of recruits in the first two months. Acroporidae-polyps were 1.14 mm in diameter when they settled and grew at rate of approximately 0.18 mm in diameter per week. Pocilloporidae-polyps settled at approximately 1.14 mm and showed a growth rate of approximately 0.23 mm in diameter per week. Recruits of three families were observed in detail over time on the artificial plates using this method. While recruitment was fairly continuous, an increase in pocilloporid recruits was observed during the month of September. Similar increases were observed for acroporid recruits during the middle of November and the second quarter of December. This method identifies the limits of detection for the fluorescence census technique used and represents a useful method for the temporal fine scale observation of recruitment in situ.     

Coral recruitment and early benthic community development on several materials used in the construction of artificial reefs and breakwaters

Artificial reefs are increasingly being promoted as a means to mitigate impacts from human activities in coastal urban areas. Coastal defense structures such as breakwaters are becoming recognized as large-scale artificial reefs that support abundant and diverse marine communities and play important roles in coastal ecology and management. However, there is limited understanding of how substrate materials used to construct artificial reefs or breakwaters can influence the development of habitat-forming benthic organisms. To assess the influence of substrata on coral recruitment and overall benthic community development, we deployed standard-size tiles of materials used in the construction of breakwaters and artificial reefs (concrete, gabbro, granite, and sandstone), along with terra-cotta for comparative purposes, at two breakwaters (DDD, PRT) and two natural reef sites (NR1, NR2) in Dubai, United Arab Emirates, for one year. Kruskal-Wallis ANOVA with post-hoc Mann-Whitney U-tests were used to examine differences in coral recruitment among sites and materials. Coral recruitment was highest at the DDD (4.9 ± 0.5 recruits 100 cm^− 2), while recruitment was low and did not differ among other sites (PRT: 0.1 ± 0.04, NR1:0.3 ± 0.1, NR2: 0.1 ± 0.03 recruits 100 cm^− 2). There were significant differences in coral recruitment among materials at DDD, where gabbro had higher recruit densities than concrete and sandstone; sandstone also contained less coral recruits than terra-cotta. Variability associated with low coral recruit densities precluded significant differences among materials at other sites. Overall benthic community structure differed more as a result of differences among sites than among substrate materials. Higher community dissimilarity was observed among sites than among material in SIMPER analysis, and significant differences were only observed among sites in ANOSIM. Univariate comparison of the benthos correlated with community differences in NMS ordination also showed significant differences among sites but not material. Overall, these results indicate that site-specific differences in recruitment patterns are more important in determining early benthic community structure and coral recruitment than are differences among substrate material. However, where coral recruitment is high, these results suggest that gabbro should be used preferentially over concrete or sandstone where it is feasible, but that granite may be a suitable alternative where it is the dominant stone. Coral recruitment on terra-cotta was comparable to all materials but sandstone, supporting its continued use in recruitment studies. These results also indicate that using stone amenable to coral recruitment is unlikely to influence the wider benthic community.