Effect of Nitrogen Source on Growth and Trichloroethylene Degradation by Methane-Oxidizing Bacteria

The effect of nitrogen source on methane-oxidizing bacteria with respect to cellular growth and trichloroethylene (TCE) degradation ability were examined. One mixed chemostat culture and two pure type II methane-oxidizing strains, Methylosinus trichosporium OB3b and strain CAC-2, which was isolated from the chemostat culture, were used in this study. All cultures were able to grow with each of three different nitrogen sources: ammonia, nitrate, and molecular nitrogen. Both M. trichosporium OB3b and strain CAC-2 showed slightly lower net cellular growth rates and cell yields but exhibited higher methane uptake rates, levels of poly-β-hydroxybutyrate (PHB) production, and naphthalene oxidation rates when grown under nitrogen-fixing conditions. The TCE-degrading ability of each culture was measured in terms of initial TCE oxidation rates and TCE transformation capacities (mass of TCE degraded/biomass inactivated), measured both with and without external energy sources. Higher initial TCE oxidation rates and TCE transformation capacities were observed in nitrogen-fixing mixed, M. trichosporium OB3b, and CAC-2 cultures than in nitrate- or ammonia-supplied cells. TCE transformation capacities were found to correlate with cellular PHB content in all three cultures. The results of this study suggest that the nitrogen-fixing capabilities of methane-oxidizing bacteria can be used to select for high-activity TCE degraders for the enhancement of bioremediation in fixed-nitrogen-limited environments.     

Effect of Nitrogen Source on Growth and Trichloroethylene Degradation by Methane-Oxidizing Bacteria

The effect of nitrogen source on methane-oxidizing bacteria with respect to cellular growth and trichloroethylene (TCE) degradation ability were examined. One mixed chemostat culture and two pure type II methane-oxidizing strains, Methylosinus trichosporium OB3b and strain CAC-2, which was isolated from the chemostat culture, were used in this study. All cultures were able to grow with each of three different nitrogen sources: ammonia, nitrate, and molecular nitrogen. Both M. trichosporium OB3b and strain CAC-2 showed slightly lower net cellular growth rates and cell yields but exhibited higher methane uptake rates, levels of poly-β-hydroxybutyrate (PHB) production, and naphthalene oxidation rates when grown under nitrogen-fixing conditions. The TCE-degrading ability of each culture was measured in terms of initial TCE oxidation rates and TCE transformation capacities (mass of TCE degraded/biomass inactivated), measured both with and without external energy sources. Higher initial TCE oxidation rates and TCE transformation capacities were observed in nitrogen-fixing mixed, M. trichosporium OB3b, and CAC-2 cultures than in nitrate- or ammonia-supplied cells. TCE transformation capacities were found to correlate with cellular PHB content in all three cultures. The results of this study suggest that the nitrogen-fixing capabilities of methane-oxidizing bacteria can be used to select for high-activity TCE degraders for the enhancement of bioremediation in fixed-nitrogen-limited environments.

Optimal bioremediation conditions within contaminated aquifers are often found to be limited by the availability of nutrients, including nitrogen. Consequently, microorganisms that are capable of degrading contaminants as well as fixing molecular nitrogen as their sole nitrogen source could have a growth advantage in fixed-nitrogen-deficient environments that would be favorable for promoting in situ bioremediation.Trichloroethylene (TCE) is a major groundwater contaminant of concern in the United States due to its suspected carcinogenity and persistence in subsurface environments (31). However, a number of laboratory (1, 4, 13, 16, 18, 19, 22, 23, 26–28, 34) and field studies (3, 15, 24, 25) have shown that TCE can be cometabolically transformed into nontoxic end products (CO₂ and Cl⁻) by methane-oxidizing bacteria at the expense of reducing energy in the form of NADH. Many studies have also reported that some methane-oxidizing cultures (type II) are able to utilize different sources of nitrogen (N) for cellular growth (32, 33), including molecular nitrogen at reduced oxygen partial pressures (11, 12, 20, 33). The types of methanotrophs that are capable of nitrogen fixation also produce a type of oxygenase (i.e., soluble methane monooxygenase [sMMO]) which exhibits high activity with respect to the oxidation of TCE.Poly-β-hydroxybutyrate (PHB) is an internal reducing-energy storage polymer that can be used as an alternative reducing-energy source by a number of methane-oxidizing cultures under starvation conditions (9). Recently, a number of studies observed a correlation between TCE transformation capacities (T_c; mass of TCE transformed per mass of cells inactivated) and microbial PHB content (7, 16, 17), suggesting that PHB might be used as an alternative NADH source for TCE oxidation by methane-oxidizing bacteria in the absence of growth substrate. It has also been shown that the synthesis of PHB is stimulated in cells grown under nutrient-limited conditions, including nitrogen-fixing conditions (2, 9, 10, 21). As a result of the characteristics of methane-oxidizing microorganisms described above, it may be possible to select for nitrogen-fixing methane oxidizers in fixed-nitrogen-limited subsurface environments such that the burden of nutrient addition to the subsurface for the sustained growth of these contaminant degraders is diminished while contaminant degradation is enhanced during in situ bioremediation.A recent study conducted by us (7) explored the feasibility of using the nitrogen-fixing capabilities of methane oxidizers for the enhancement of bioremediation. Our results suggested that nitrogen-fixing mixed cultures were able to degrade TCE as effectively as nitrate-supplied cultures. Further, higher T_c and higher cellular PHB contents were observed in nitrogen-fixing cultures. Of particular interest were observations of lower TCE product toxicity, measured in terms of methane uptake rates following TCE exposure, for nitrogen-fixing cultures than for nitrate- or ammonia-supplied cultures. Since that study was conducted with mixed cultures, it was difficult to elucidate the reasons for the enhanced degradation performance of the nitrogen-fixing methane oxidizers. An understanding of the effects of nitrogen source on cell growth and TCE degradation ability will be particularly beneficial for designing, operating, and implementing in situ- or ex situ-engineered bioremediation systems. This study evaluates nitrogen source effects on methane-oxidizing bacteria, using two pure strains and one mixed chemostat culture. Nitrogen source effects are examined with regard to cellular growth, specific methane uptake rates, specific naphthalene oxidation rates, and TCE degradation ability.     

Effect of Zytron and Its Degradation Products on Soil Microorganisms

There was no adverse effect of Zytron, o-2,4-dichlorophenyl o-methyl isopropyl phosphoramidothioate, a herbicide, upon molds, actinomycetes, and soil bacteria in field plots, or upon selected soil microorganisms in model systems. 2,4-Dichlorophenol, a degradation product, was found to be toxic at levels above 10 ppm to molds, but levels this high were not found in soil from treated plots. Aspergillus clavatus degraded both Zytron and 2,4-dichlorophenol. Sodium o-methyl isopropyl phosphoramidothioate, another degradation product of Zytron, stimulated the growth of a species of Penicillium.     

Anaerobic Naphthalene Degradation by a Sulfate-Reducing Enrichment Culture

Anaerobic naphthalene degradation by a sulfate-reducing enrichment culture was studied by substrate utilization tests and identification of metabolites by gas chromatography-mass spectrometry. In substrate utilization tests, the culture was able to oxidize naphthalene, 2-methylnaphthalene, 1- and 2-naphthoic acids, phenylacetic acid, benzoic acid, cyclohexanecarboxylic acid, and cyclohex-1-ene-carboxylic acid with sulfate as the electron acceptor. Neither hydroxylated 1- or 2-naphthoic acid derivatives and 1- or 2-naphthol nor the monoaromatic compounds ortho-phthalic acid, 2-carboxy-1-phenylacetic acid, and salicylic acid were utilized by the culture within 100 days. 2-Naphthoic acid accumulated in all naphthalene-grown cultures. Reduced 2-naphthoic acid derivatives could be identified by comparison of mass spectra and coelution with commercial reference compounds such as 1,2,3,4-tetrahydro-2-naphthoic acid and chemically synthesized decahydro-2-naphthoic acid. 5,6,7,8-Tetrahydro-2-naphthoic acid and octahydro-2-naphthoic acid were tentatively identified by their mass spectra. The metabolites identified suggest a stepwise reduction of the aromatic ring system before ring cleavage. In degradation experiments with [1-¹³C]naphthalene or deuterated D₈-naphthalene, all metabolites mentioned derived from the introduced labeled naphthalene. When a [¹³C]bicarbonate-buffered growth medium was used in conjunction with unlabeled naphthalene, ¹³C incorporation into the carboxylic group of 2-naphthoic acid was shown, indicating that activation of naphthalene by carboxylation was the initial degradation step. No ring fission products were identified.     

Identical Ring Cleavage Products during Anaerobic Degradation of Naphthalene, 2-Methylnaphthalene, and Tetralin Indicate a New Metabolic Pathway

Anaerobic degradation of naphthalene, 2-methylnaphthalene, and tetralin (1,2,3,4-tetrahydronaphthalene) was investigated with a sulfate-reducing enrichment culture obtained from a contaminated aquifer. Degradation studies with tetralin revealed 5,6,7,8-tetrahydro-2-naphthoic acid as a major metabolite indicating activation by addition of a C₁ unit to tetralin, comparable to the formation of 2-naphthoic acid in anaerobic naphthalene degradation. The activation reaction was specific for the aromatic ring of tetralin; 1,2,3,4-tetrahydro-2-naphthoic acid was not detected. The reduced 2-naphthoic acid derivatives tetrahydro-, octahydro-, and decahydro-2-naphthoic acid were identified consistently in supernatants of cultures grown with either naphthalene, 2-methylnaphthalene, or tetralin. In addition, two common ring cleavage products were identified. Gas chromatography-mass spectrometry (GC-MS) and high-resolution GC-MS analyses revealed a compound with a cyclohexane ring and two carboxylic acid side chains as one of the first ring cleavage products. The elemental composition was C₁₁H₁₆O₄ (C₁₁H₁₆O₄-diacid), indicating that all carbon atoms of the precursor 2-naphthoic acid structure were preserved in this ring cleavage product. According to the mass spectrum, the side chains could be either an acetic acid and a propenic acid, or a carboxy group and a butenic acid side chain. A further ring cleavage product was identified as 2-carboxycyclohexylacetic acid and was assumed to be formed by β-oxidation of one of the side chains of the C₁₁H₁₆O₄-diacid. Stable isotope-labeling growth experiments with either ¹³C-labeled naphthalene, per-deuterated naphthalene-d₈, or a ¹³C-bicarbonate-buffered medium showed that the ring cleavage products derived from the introduced carbon source naphthalene. The series of identified metabolites suggests that anaerobic degradation of naphthalenes proceeds via reduction of the aromatic ring system of 2-naphthoic acid to initiate ring cleavage in analogy to the benzoyl-coenzyme A pathway for monoaromatic hydrocarbons. Our findings provide strong indications that further degradation goes through saturated compounds with a cyclohexane ring structure and not through monoaromatic compounds. A metabolic pathway for anaerobic degradation of bicyclic aromatic hydrocarbons with 2-naphthoic acid as the central intermediate is proposed.     

Effect of Photosynthetic Bacteria and Compost on Degradation of Petroleum Products in Soil

Addition of diesel fuel and waste engine oil to soil was found to stimulate hydrocarbon-oxidizing microorganisms. Corynebacteria constitute a large group of hydrocarbon-oxidizing microorganisms. Addition of a liquid culture of photosynthetic bacteria to soil facilitates degradation of petroleum products and also stimulates growth of hydrocarbon-oxidizing microorganisms. Combined addition of photosynthetic bacteria and compost to soil polluted with petroleum products produces a greater increase in the number of hydrocarbon-oxidizing bacteria and substantially augments the rate of pollutant degradation.     

Anaerobic Naphthalene Degradation by Microbial Pure Cultures under Nitrate-Reducing Conditions

Pure bacterial cultures were isolated from a highly enriched denitrifying consortium previously shown to anaerobically biodegrade naphthalene. The isolates were screened for the ability to grow anaerobically in liquid culture with naphthalene as the sole source of carbon and energy in the presence of nitrate. Three naphthalene-degrading pure cultures were obtained, designated NAP-3-1, NAP-3-2, and NAP-4. Isolate NAP-3-1 tested positive for denitrification using a standard denitrification assay. Neither isolate NAP-3-2 nor isolate NAP-4 produced gas in the assay, but both consumed nitrate and NAP-4 produced significant amounts of nitrite. Isolates NAP-4 and NAP-3-1 transformed 70 to 90% of added naphthalene, and the transformation was nitrate dependent. No significant removal of naphthalene occurred under nitrate-limited conditions or in cell-free controls. Both cultures exhibited partial mineralization of naphthalene, representing 7 to 20% of the initial added ¹⁴C-labeled naphthalene. After 57 days of incubation, the largest fraction of the radiolabel in both cultures was recovered in the cell mass (30 to 50%), with minor amounts recovered as unknown soluble metabolites. Nitrate consumption, along with the results from the ¹⁴C radiolabel study, are consistent with the oxidation of naphthalene coupled to denitrification for NAP-3-1 and nitrate reduction to nitrite for NAP-4. Phylogenetic analyses based on 16S ribosomal DNA sequences of NAP-3-1 showed that it was closely related to Pseudomonas stutzeri and that NAP-4 was closely related to Vibrio pelagius. This is the first report we know of that demonstrates nitrate-dependent anaerobic degradation and mineralization of naphthalene by pure cultures.     

糖基化终产物对原代培养乳鼠肾脏细胞损伤的影响

糖基化终产物(AGEs)在糖尿病肾病的发生发展过程中起着重要的作用.但目前其作用机制还不太清楚.通过体外乳鼠肾脏细胞的原代培养,探讨AGEs对肾细胞的损伤作用及可能的作用机制.取出生3天的SD大鼠的乳鼠肾脏进行体外原代细胞培养,并取传代到4-6代的细胞进行实验研究.分别用不同浓度的AGEs(0、1.2、2.5、5、10、20 mg/ml),不同的作用时间(6、12、18、24 h)作用于体外培养的肾细胞,用MTT法检测AGEs对肾细胞的增殖情况,用酶试剂盒法检测AGEs对肾细胞培养液中乳酸脱氢酶(LDH)、β-N-乙酰氨基葡萄糖苷酶(NAG)的含量,以及肾细胞内还原型谷胱甘肽(GSH)和超氧化物歧化酶(SOD)的含量.实验结果表明随着AGEs作用肾细胞时间的延长和浓度的增加,细胞存活率、细胞内GSH含量和SOD活性均逐渐下降,而细胞培养液中LDH和NAG的含量则逐渐升高,与正常培养的对照组细胞相比差异非常显著(P＜0.001),并且AGEs对细胞的作用与其浓度和作用时间呈显著的量效关系.实验结果说明AGEs对原代培养的肾细胞有明显的损伤作用,并随着AGEs作用浓度的增加和作用时间的延长对肾细胞的损伤越来越严重,实验结果也表明.肾细胞对AGEs的作用很敏感,其损伤细胞的途径和作用机制可能是由于改变了肾细胞膜的通透性和降低肾细胞抗氧化能力,该实验研究也进一步提示了AGEs是导致糖尿病肾脏并发症发生的重要原因之一.     

卡立泊来德对AGEs所致新内膜形成的抑制作用及相关机制

为了观察Na⁺/H⁺ 交换蛋白1(NHE1)选择性抑制剂卡立泊来德(cariporide)对糖基化终末产物( advanced glycation end products,AGEs)所致大鼠颈动脉球囊损伤后新内膜形成的作用,以球囊损伤大鼠颈总动脉,取标本HE染色后进行形态学观察并计算内膜、中膜面积及内膜/中膜面积比．为探讨相关机制,原代培养大鼠主动脉平滑肌细胞( vascular smooth muscle cell,VSMC),[³H] thymidine 检测 VSMC增殖; RT-PCR及实时RT-PCR检测VSMC基质金属蛋白酶2( matrix metalloproteinases-2,MMP-2)、基质金属蛋白酶9(matrixmetalloproteinases-9,MMP-9)及环氧酶2(cyclooxygenase-2,COX-2) mRNA水平;Western blot检测核因子κB(NF-κB)的表达及抑制蛋白κBα(I-κBα)的降解．大鼠颈动脉球囊损伤后,cariporide(0.1,10 mg/kg)能显著抑制AGEs所致新内膜增生(P < 0.01)．细胞实验结果显示,cariporide 可以浓度依赖性地抑制AGEs 诱导VSMC中COX-2、MMP-2及MMP-9 mRNA 表达,同时显著抑制I-κBα降解及NF-κB表达．结果表明,cariporide 能显著抑制血管损伤后AGEs所致新内膜的形成,其机制与抑制NHE1活性从而抑制NF-κB活化,下调MMP-2、MMP-9及COX-2 mRNA有关．提示NHE1可能是AGEs致血管损伤信号通路中的重要组成部分．     

End Products of Anaerobic Chitin Degradation by Salt Marsh Bacteria as Substrates for Dissimilatory Sulfate Reduction and Methanogenesis

The anaerobic pathway of chitin decomposition by chitinoclastic bacteria was examined with an emphasis on end product coupling to other salt marsh bacteria. Actively growing chitinoclastic bacterial isolates produced primarily acetate, H₂, and CO₂ in broth culture. No sulfate-reducing or methanogenic isolates grew on chitin as sole carbon source or produced any measurable degradation products. Mixed cultures of chitin degraders with sulfate reducers resulted in positive sulfide production. Mixed cultures of chitin-degrading isolates with methanogens resulted in the production of CH₄ with reductions in headspace CO₂ and H₂. The combination of all three metabolic types resulted in the simultaneous production of methane and sulfide, with more methane being produced in mixed cultures containing CO₂-reducing methanogens and acetoclastic sulfate reducers because of less interspecific H₂ competition.     

晚期糖化终产物受体

晚期糖化终产物受体 (ｒｅｃｅｐｔｏｒｆｏｒａｄ ｖａｎｃｅｄｇｌｙｃａｔｉｏｎｅｎｄｐｒｏｄｕｃｔｓ,ＲＡＧＥ)是一种表达于多种细胞表面的生物分子 ,属免疫球收稿日期 :2 0 0 1 2 2 6作者简介 :朱波 (1974— ) ,男 ,博士生 ;陈正堂(195 7— ) ,男 ,主任医师 ,教授 ,博士生导师 ,博士。蛋白超家族成员之一。以往的研究表明 ,晚期糖化终产物受体与其配体的结合在糖尿病并发的肾病发病机制及神经系统的发育中起着十分重要的作用。 2 0 0 0年 5月份Ｎａｔｕｒｅ杂志报道了ＲＡＧＥ在肿瘤生长、肿瘤转移等多种生物学行为中起着重要的作…     

蒸汽爆破对油菜秸秆降解产物的影响

采用DNS法、离子色谱法和气质联用(GC-MS)技术对油菜秸秆蒸汽爆破降解产物进行了分析。结果表明,经蒸汽爆破处理后的油菜秸秆酶解产糖量有明显的提高,为未处理样品直接酶解含量的3.4倍,各种水溶性糖化合物的含量也大大提高,其中葡萄糖和木糖含量分别为未处理样品直接酶解含量的3.5倍和4.7倍之多。水提液乙酸乙酯萃取物中分别检测到脂肪酸类、芳香类和呋喃类物质40、12和1种。通过扫描电镜观察处理后油菜秸秆的表面形貌结构,发现处理后的秸秆表面结构松散,比表面积增大,酶对纤维素的可及性增加。     

硫代葡萄糖苷的降解途径及其产物的研究进展

硫代葡萄糖苷(GS)是一类广泛存在于植物界的次生代谢产物,其降解产物具有多种活跃的化学和生物活性.GS种类繁多,根据其侧链R基团来源不同可以分为脂肪族、芳香族和吲哚族3大类.GS降解过程受多种因素影响而难以控制:不同种类的GS在硫苷酶作用下产生异硫氰酸酯类、腈类、硫氰酸酯类、环腈类、恶唑烷酮类化合物等,在较高温度下能发生自降解,在强酸、强碱以及某些化学物质的作用下也不稳定,也能在微生物作用下有效降解.该文从影响GS降解的内源和外源因素入手,系统阐述了GS的酶降解、热降解、化学降解、微生物降解等途径及其产物,为理论研究和生产实践中GS降解的控制提供信息.     

Ribosome Degradation and the Degradation Products in Starved Escherichia coli

The properties of the abnormal ribonucleoprotein particles produced by Escherichia coli Q-13 starved for glucose were studied. Smaller species of these partially deproteinized particles separable to six distinct sizes contained partially degraded ribonucleic acids. The mode of ribosome degradation under this condition is discussed in terms of differential appearance of these intermediate particles.     

A Targeted Real-Time PCR Assay for Studying Naphthalene Degradation in the Environment

A quantitative real-time polymerase chain reaction (PCR) assay was developed for monitoring naphthalene degradation during bioremediation processes. The phylogenetic affiliations of known naphthalene-hydroxylating dioxygenase genes were determined to target functionally related bacteria, and degenerate primers were designed on the basis of the close relationships among dioxygenase genes identified from naphthalene-degrading Proteobacteria. Evaluation of the amplification specificity demonstrated that the developed real-time PCR assay represents a rapid, precise means for the group-specific enumeration of naphthalene-degrading bacteria. According to validation with bacterial pure cultures, the assay discriminated between the targeted group of naphthalene dioxygenase sequences and genes in other naphthalene or aromatic hydrocarbon-degrading bacterial strains. Specific amplification of gene fragments sharing a high sequence similarity with the genes included in the assay design was also observed in soil samples recovered from large-scale remediation processes. The target genes could be quantified reproducibly at over five orders of magnitude down to 3 × 10² gene copies. To investigate the suitability of the assay in monitoring naphthalene biodegradation, the assay was applied in enumerating the naphthalene dioxygenase genes in a soil slurry microcosm. The results were in good agreement with contaminant mineralization and dot blot quantification of nahAc gene copies. Furthermore, the real-time PCR assay was found to be more sensitive than hybridization-based analysis.     

End Products of Glucose Fermentation by Brochothrix thermosphacta

Anaerobically, Brochothrix thermosphacta fermented glucose primarily to l-lactate, acetate, formate, and ethanol. The ratio of these end products varied with growth conditions. Both the presence of acetate and formate and a pH below about 6 increased l-lactate production from glucose. Small amounts of butane-2,3-diol were also produced when the pH of the culture was low (相似文献   

Fibrin Degradation Products and Ovarian Tumours

Fibrin degradation products (F.D.P.) were determined in the serum of 163 women in whom ovarian tumours had been suspected on palpation at gynaecological examination and who were afterwards examined by laparoscopy or subjected to laparotomy. F.D.P. were found in the serum (0·5-30 mg/100 ml) of 23 (72%) out of 32 patients with malignant tumours. Of 131 patients with benign findings F.D.P. (traces to 2 mg/100 ml) were found in six (4·5%), and in most of these the occurrence of F.D.P. could be explained on other clinical grounds. The findings suggest that the examination of F.D.P. in suspected malignant ovarian tumour may be of diagnostic value.Determination of F.D.P. in malignant ascitic fluid showed very high values, ranging between 40 and 350 mg/ 100 ml. This argues for the occurrence of F.D.P. in the blood being due to an extravascular breakdown of fibrin caused by tumour cells, but they may also be due to thromboplastic and fibrinolytic agents from the tumour entering the blood stream.     

Bacterial Degradation Products of the lxodicide Amitraz

The nature and order of appearance of the degradation products of amitraz by mixed bacterial cultures were investigated. The primary pathway involves the conversion of amitraz to 2,4-dimethylaniline. A slower secondary pathway involves the conversion of amitraz to 2,4-dimethylaniline via the intermediates N -2, 4-dimethylphenyl- N '-methylformamidine and 2, 4-dimethylformanilide. The bacterial degradation pathway of amitraz differs from that found in plants and animals.