Alternation between clear,high-vegetation and turbid,low-vegetation states in a shallow lake: the role of birds

External phosphorus load to a wetland with two shallow lakes in the Botshol Nature Reserve, the Netherlands, was reduced since 1989, resulting in a rapid reduction of phosphorus levels, phytoplankton biomass and turbidity, and after 4 years, explosive growth of Characeae. The clear water state was unstable, however, and the ecosystem subsequently alternated between clear, high-vegetation and turbid, low-vegetation states. The switch from clear to turbid states occurred at a higher phosphorus level than the switch from turbid to clear states and area covered by macrophytes was significantly correlated to Secchi disc depth (r = 0.86, p < 0.001). Beginning in 1997, phosphorus input from droppings of greylag geese and black-headed gulls increased. The hypothesis that grazing prevented the return of Characeae populations was tested during 1996–1997 using large-scale exclosure experiments. The biomass and cover of Characeae were monitored in 17 exclosures for 2 years. The experiments showed no significant increase in Characeae in the absence of grazers compared with the controls. During the course of the experiments, the entire lake switched from turbid water to clear water and high Chara biomass. These ecosystem developments suggest that light limitation was the main factor controlling the collapse and return of Characeae in Botshol.     

Precipitation-Induced Alternative Regime Switches in Shallow Lakes of the Boreal Plains (Alberta,Canada)

This study focused on unraveling the natural mechanism for the frequent shifts in alternative regimes in pristine shallow lakes of the Boreal Plains, Alberta, Canada. The lakes tend to be clear and dominated by submerged aquatic vegetation (SAV) or turbid and dominated by phytoplankton. We report on the inter-annual response of 23 lakes from 2001 to 2007. We explore the effect of fluctuations in annual precipitation on the lake response including water depth, total phosphorus (TP) concentration, turbidity, phytoplankton biomass, SAV biomass, and the proportion of clear and turbid lakes. The regime switches appear driven by the transient dynamics of phytoplankton, and dilution of nutrients, phytoplankton biomass, and turbidity during wet years, and evapoconcentration during dry years. Increased precipitation was correlated with decreased phytoplankton biomass, TP concentration, chloride concentration, and turbidity. In 2005, the wettest year, no phytoplankton-dominated lakes were observed. During the driest year (2002), the phytoplankton-dominant regime (>18 μg chl-a L^?1) occurred in 22% of lakes, which was higher than the study period average. SAV biomass was not directly affected by precipitation, but was negatively associated with phytoplankton biomass and positively associated with the previous year’s SAV growth. SAV biomass was carried over from year-to-year, and the occurrence of SAV-dominated (>25% cover) lakes was significantly higher in 2007 (90%) following 3 years of high precipitation levels.     

Restoration of Botshol (The Netherlands) by reduction of external nutrient load: The effects on physico-chemical conditions,plankton and sessile diatoms

The nature reserve Botshol (Utrecht, The Netherlands), consisting of two shallow lakes, ditches and reedland, originated from excavation of peat by man in the 17th century. Up to 1960 Botshol was a clear-water Charophyte lake system. Since the sixties water quality deteriorated and phytoplankton concentrations increased, while the number and dispersion of Chara species decreased. Several restoration measures were attempted to restablish a Charophyte-dominated ecosystem. This paper reports the promising results of this restoration experiment and mentions some complications that arose in restoring the reserve to a less fertile state. The restoration measures have resulted in a sixfold reduction of the external phosphorus load, from 0.6 to 0.1 g m^–2.y^–1, and in a significant reduction of phosphorus levels at all locations. Moreover, the light climate improved and the phyto- and zooplankton compositions changed considerably Unexpectedly, a bloom ofPrymnesium parvum and a fish kill were observed during the last three months of 1990. Despite this fish kill the restoration of the lake is successful so far.     

Seasonal changes of mechanisms maintaining clear water in a shallow lake with abundant Chara vegetation

The study is based on monitoring data on the seasonal variation during four (1996–1999) vegetation periods, as well as long-term summer data on submerged vegetation, nutrients, light, phytoplankton and zooplankton in Lake Krankesjön, a shallow, calcium-rich, moderately eutrophic lake in southern Sweden.The lake has been in the clear water state with abundant submerged vegetation since the end of the 1980s. Somewhat lower summer biomass of submerged macrophytes during 1997 and 1999 indicates a temporary instability of the clear water state. During these 2 years, summer transparency was about 1.2–2.1 m, while concentrations of total phosphorus and chlorophyll (Chl) a were about 26–40 and 8–18 μg l⁻¹, respectively.Summer biomass of submerged macrophytes was higher during 1996 and 1998. In both years, a distinct increase in light availability and decrease in concentrations of nutrients and chlorophyll occurred simultaneously with the development of dense Chara vegetation. Summer values for transparency were about 2.0–2.5 m, while concentrations of total phosphorus and Chl a were about 20–32 and 4–11 μg l⁻¹, respectively.Summer biomass of crustacean zooplankton was below 250 μg l⁻¹ during all 4 years. A peak abundance of Cladocera (mainly Bosmina longirostris) during May or June caused only a short-term reduction in chlorophyll concentrations that was more pronounced in 1997 than in 1996.Measured light attenuation during 1999 was closely correlated with light attenuation calculated from the amount of suspended solids, chlorophyll concentrations, and water colour. Detritus contributed most to the total amount of suspended solids, while chlorophyll was the main contributor to light attenuation.A long-term decrease of the ratios between chlorophyll and total phosphorus suggests that phytoplankton in the clear water state is limited by factors other than total phosphorus concentrations. Increased sedimentation rate, carbon limitation, allelopathy and a lower bioavailable fraction of the total amount of phosphorus are possible explanations, while nitrogen limitation and grazing from zooplankton probably are of minor importance.Possible reasons for the “instability” of the clear water state during 1997 and 1999 are discussed. Unusually high water level as well as cold and windy weather during the spring of 1996–1999 may have caused a slow and late growth of the plants and thus a temporary instability. However, a tendency for an increase in total phosphorus concentrations and sediment accumulation along the wind-protected shores during the clear water state indicate the possibility of a long-term destabilization which contradicts the alternative stable states model.     

Phosphorus dynamics following restoration measures in the Loosdrecht Lakes (The Netherlands)

External phosphorus loads to three shallow lakes in the Netherlands were reduced by eliminating waste-water discharge and by dephosphorization of the supply water, with which water level is controlled. Concentrations of total-phosphorus and chlorophyll a were significantly reduced during 1980–1986 in L. Breukeleveen, but not in L. Vuntus and L. Loosdrecht. In 1983–1986 the phosphorus flow through several trophic levels was determined. Changes over these years were not significant. External input to the lakes still contributes substantially to the phosphorus input. Release from the sediments also contributed to the cycling of the phosphorus. Excretion by large crustacean zooplankters was important in phosphorus recycling, and delivered 20–30% of the daily phytoplankton phosphorus demand. A similar contribution is expected from fish. If one wants recovery of the lakes to be accelerated, additional measures are needed.     

Effects of Submerged Vegetation on Water Clarity Across Climates

A positive feedback between submerged vegetation and water clarity forms the backbone of the alternative state theory in shallow lakes. The water clearing effect of aquatic vegetation may be caused by different physical, chemical, and biological mechanisms and has been studied mainly in temperate lakes. Recent work suggests differences in biotic interactions between (sub)tropical and cooler lakes might result in a less pronounced clearing effect in the (sub)tropics. To assess whether the effect of submerged vegetation changes with climate, we sampled 83 lakes over a gradient ranging from the tundra to the tropics in South America. Judged from a comparison of water clarity inside and outside vegetation beds, the vegetation appeared to have a similar positive effect on the water clarity across all climatic regions studied. However, the local clearing effect of vegetation decreased steeply with the contribution of humic substances to the underwater light attenuation. Looking at turbidity on a whole-lake scale, results were more difficult to interpret. Although lakes with abundant vegetation (>30%) were generally clear, sparsely vegetated lakes differed widely in clarity. Overall, the effect of vegetation on water clarity in our lakes appears to be smaller than that found in various Northern hemisphere studies. This might be explained by differences in fish communities and their relation to vegetation. For instance, unlike in Northern hemisphere studies, we find no clear relation between vegetation coverage and fish abundance or their diet preference. High densities of omnivorous fish and coinciding low grazing pressures on phytoplankton in the (sub)tropics may, furthermore, weaken the effect of vegetation on water clarity.     

Hydrology-Driven Regime Shifts in a Shallow Tropical Lake

Shifts between alternative stable states have become a focus of research in temperate shallow lakes. Here we show that sharp transitions between a clear, macrophyte-dominated state and a turbid state without submerged plants can also occur in tropical floodplain lakes, albeit driven by a largely different set of mechanisms. We show how a shallow lake in the Pantanal becomes covered by an exploding population of the submerged macrophyte Egeria najas Planchon as the water level rises during the annual high-water period. Water clarity increases spectacularly in this period due to flushing with river water that has lost most of its suspended matter during its slow flow over the flooded vegetated plains. A few months later when the water level drops again, the submerged plant beds die and decompose rapidly, triggering a phase of increasing turbidity. During this period an increase in dissolved organic matter, suspended matter, and phytoplankton biomass results in a sharp deterioration in water clarity. The concomitant water level decrease largely counteracts the effects on the underwater light climate, so that the amount of light at the bottom may not differ in comparison with the high-water period. Therefore, changes in light climate seem unlikely to be the sole driver of the vegetation shifts, and other mechanisms may prevent recovery of the submerged vegetation until the next high-water episode. Also, contrary to what is found in temperate lakes, there is no evidence for top-down control of phytoplankton biomass associated with the macrophyte-dominated state in our tropical lake. Author Contributions  Simoni Maria Loverde-Oliveira, Vera Lúcia Moraes Huszar—conceived the study, Simoni Maria Loverde-Oliveira—performed research and analyzed data, Simoni Maria Loverde-Oliveira, Vera Lúcia Moraes Huszar, Nestor Mazzeo, Marten Scheffer—wrote the paper.     

Trophic interactions in a shallow lake following a reduction in nutrient loading: a long-term study

After the diversion of a nutrient-rich inflow, the eutrophic lake, Alderfen Broad, initially showed reduced total phosphorus concentrations and phytoplankton populations, clear water and the establishment of submerged macrophytes. Internal P loading then increased, perhaps stimulated by the senescence of submerged macrophytes and exacerbated by the lack of flushing. Cyanophytes appeared in the summer of two years. As a consequence of poor recruitment of roach (Rutilus rutilus (L.)), the chief zooplanktivore, and a summerkill of the fish population, populations of large-bodied Cladocera (Daphnia hyalina/ longispina and ultimately D. magna) developed. In the long-term, these may have limited the further development of phytoplankton populations and clear water and submerged macrophytes returned. During this latter period, internal P release has remained high (> 380 µg l^-1), thereby indicating the scope for biomanipulation even in eutrophic conditions. However, isolation of the lake has led to a decrease in water level (which through increased temperatures and lowered dissolved oxygen levels was probably responsible for the fish deaths) and further concentration of internal P load. Sediment is now being removed to reestablish greater water depth.     

Influence of nutrients, submerged macrophytes and zooplankton grazing on phytoplankton biomass and diversity along a latitudinal gradient in Europe

In order to evaluate latitudinal differences in the relationship of phytoplankton biomass and diversity with environmental conditions in shallow lakes, we sampled 98 shallow lakes from three European regions: Denmark (DK), Belgium/The Netherlands (BNL) and southern Spain (SP). Phytoplankton biomass increased with total phosphorus (TP) concentrations and decreased with submerged macrophyte cover across the three regions. Generic richness was significantly negatively related to submerged macrophyte cover and related environmental variables. Zooplankton:phytoplankton biomass ratios were positively related to submerged macrophyte cover and negatively to phytoplankton generic richness in DK and BNL, suggesting that the low generic richness in lakes with submerged macrophytes was due to a higher zooplankton grazing pressure in these regions. In SP, phytoplankton generic richness was not influenced by zooplankton grazing pressure but related to conductivity. We observed no relationship between phytoplankton generic richness and TP concentration in any of the three regions. The three regions differed significantly with respect to mean local and regional generic richness, with BNL being more diverse than the other two regions. Our observations suggest that phytoplankton diversity in European shallow lakes is influenced by submerged macrophyte cover indirectly by modulating zooplankton grazing. This influence of submerged macrophytes and zooplankton grazing on phytoplankton diversity decreases from north to south.     

How important is the crustacean plankton for the maintenance of water clarity in shallow lakes with abundant submerged vegetation?

• 1 We measured the abundance and biomass of filter‐feeding microcrustacean zooplankton and calculated their grazing impact on phytoplankton biomass during summer in five shallow, mesotrophic to eutrophic lakes. For three of the lakes data exist both from years with dense submerged vegetation and low turbidity (the clearwater state), as well as from years characterised by sparse vegetation and high turbidity (the turbid state). In the other two lakes data are available only for clearwater conditions.
• 2 In all lakes conditions of dense vegetation and clear water coincided with a low abundance of crustacean plankton during summer. In the three lakes that shifted, the calculated biovolume ingested by crustacean plankton (filtering rate) was 3–11 times lower during clearwater conditions compared with turbid conditions. Because phytoplankton biomass was lower during clearwater conditions, however, daily grazing pressure from microcrustacea (expressed as percentage of phytoplankton biomass) did not differ between states. In three of the five lakes, grazers were estimated to take less than 10% of the phytoplankton biomass per day, indicating filtration by zooplankton was not the most important mechanism to maintain clearwater conditions.
• 3 High densities of Cladocera were found in three of the lakes within dense stands of Charophyta. However, these samples were dominated by plant‐associated taxa that even during the night were rarely found outside the vegetation. This indicates that plant‐associated zooplankton has no major influence on the maintenance of water clarity outside the vegetation.
• 4 Spring peak abundance of Cladocera was observed in three of the lakes. In two of these, where seasonal development was studied in both the clearwater and the turbid state, spring peaks were lower during the clearwater state.
• 5 Predation, low food availability or a combination of both may explain the low zooplankton densities. Phytoplankton may be limited by low phosphorus availability in the lakes dominated by Charophyta. Our results indicate that the importance of zooplankton grazing may have minor importance for the maintenance of the clearwater state in lakes with dense, well‐established submerged vegetation.

     

A Theory for Cyclic Shifts between Alternative States in Shallow Lakes

Some shallow lakes switch repeatedly back and forth between a vegetation dominated clear-water state and a contrasting turbid state. Usually such alternations occur quite irregularly, but in some cases the switches between states are remarkably regular. Here we use data from a well-studied Dutch lake and a set of simple models to explore possible explanations for such cyclic behavior. We first demonstrate from a graphical model that cycles may in theory occur if submerged macrophytes promote water clarity in the short run, but simultaneously cause an increased nutrient retention, implying an accumulation of nutrients in the long run. Thus, although submerged plants create a positive feedback on their own growth by clearing the water, they may in the long run undermine their position by creating a slow “internal eutrophication”. We explore the potential role of two different mechanisms that may play a role in this internal eutrophication process using simulation models: (1) reduction of the P concentration in the water column by macrophytes, leading to less outflow of P, and hence to a higher phosphorus accumulation in the lake sediments and (2) a build-up of organic matter over time resulting in an increased sediment oxygen demand causing anaerobic conditions that boost P release from the sediment. Although the models showed that both mechanisms can produce cyclic behavior, the period of the cycles caused by the build-up of organic material seemed more realistic compared to data of the Dutch Lake Botshol in which regular cycles with a period of approximately 7 years have been observed over the past 17 years.     

Resistance to drought affects persistence of alternative regimes in shallow lakes of the Boreal Plains (Alberta,Canada)

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Ceratophyllum demersum – phosphorus interactions in nutrient enriched aquaria

High macrophyte density in shallow lakes is often associated with clear water, especially when the non-rooted, submerged angiosperm Ceratophyllum demersum is dominant. Lack of true roots and high surface area:volume ratio suggest that nutrient uptake from the water column by C. demersum may be high. Therefore, possible competition for nutrients, including phosphorus (P), could contribute to phytoplankton inhibition. C. demersum ability to absorb and store P at four nutrient levels (unenriched + three enrichment treatments) was investigated in a 34-day laboratory experiment using agar-based nutrient diffusing substrates (NDSs). P uptake rates and abatement potential by C. demersum were assessed from total phosphorus concentration (TP) patterns in the water column. Changes in C. demersum biomass (wet weight) also were determined. C. demersum took up P quickly. Some P release occurred during the experiment, especially under high nutrient conditions. Initial net P uptake by C. demersum was high, but medium-term (five weeks) average uptake was relatively low. Projected long-term net P uptake approached zero. Plant biomass loss and production of macrodetritus (plant fragments >1 mm) were highest in unenriched aquaria. Biomass loss in the lower enriched treatments was equally divided between loss as macrodetritus and as dissolved organic matter (DOM), but loss as DOM was four times higher than loss as macrodetritus in the highest nutrient treatment. The results suggest that medium- and long-term low phytoplankton biomass in C. demersum-rich lakes is achieved via mechanisms other than direct competition for nutrients from the water column.     

Phytoplankton and Epipelon Responses to Clear and Turbid Phases in a Seepage Lake (Buenos Aires,Argentina)

Annual changes in the algal density and concentrations of chlorophyll a, total phosphorus, and organic matter were analyzed in water and sediments at four sites characterized by the presence or absence of submerged and emergent macrophytes, during turbid‐ and clear‐water conditions to determine the contribution of the algal components of the plankton and the epipelon and to identify the most typical species in each community. Three states were recognized: one turbid and two clear, with different submerged macrophyte cover. The peaks of phytoplankton and epipelon occurred in the turbid phase, whereas the highest proportion of true epipelic algae in sediments was reached in the second clear phase. The Oscillatoriaceae dominated during the turbid phase in the water and throughout the entire year within the sediments. (© 2009 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

西湖引水工程絮凝剂余铝对菹草生长及水质的影响

为分析杭州西湖引水工程絮凝剂残余铝盐对水质和沉水植物的影响,研究采用室外模拟试验,考察了连续投加不同浓度梯度的明矾(KAlSO412H2O)絮凝剂对菹草(Potamogeton crispus)的生理影响和对水质的影响。试验设置了4个处理: 对照组、低剂量组(35050) g/L、中剂量组(65070) g/L、高剂量组(1100150) g/L。结果表明: (1)低、中剂量投加对水中铝盐含量无显著影响,高剂量投加导致水中铝盐含量显著上升; (2)水中铝盐含量呈先升高后降低的趋势,pH随铝盐含量升高而降低,总磷(TP)随之有所下降,各处理组水中总氮(TN)、浮游植物密度、浊度均明显下降; (3)3个剂量组菹草各生化指标较对照组几乎无显著变化,试验浓度的铝盐投加对菹草的生长没有造成明显损害,在菹草耐受范围内,建议在西湖引水工程入水口附近[水中铝盐含量约(25050) g/L]可选用菹草进行植被恢复。     

Recovery of Potamogeton pectinatus L. stands in a shallow eutrophic lake under extreme grazing pressure

In shallow lakes, submerged macrophytes contribute to the stabilization of the clear water state. If lost, a number of mechanisms prevent re-colonization. Lake Müggelsee (730 ha) lost its submerged vegetation due to increasing eutrophication and switched to phytoplankton dominance in 1970. After the reduction of nutrient loading in 1990, Potamogeton pectinatus L. started re-colonizing the lake. During the following years, it spread at a mean rate of 2.5 ha per year to all available areas <80 cm depth. Between 1993 and 1999, decreasing maximum biomass indicated hampered growth. Exclosure experiments revealed that herbivory reduced the aboveground biomass by more than 90%. Both waterfowl and fish were found to contribute to the grazing pressure despite a low abundance of the known herbivorous fish species and waterfowl in spring and summer. Protection of stands against grazing resulted in higher biomass of shoots, whereas shoot and tuber density did not change. Both shading by phytoplankton and periphyton, as well as grazing pressure, prevented the submerged vegetation of Lake Müggelsee from developing back to a dense zone that contributed to the reduction of turbidity.     

Phytoplankton and Epiphyte Development and Their Shading Effect on Submerged Macrophytes in Lakes of Different Nutrient Status

The annual mean light intensity at the depth limit of the Littorella vegetation was 24–33% of the subsurface light intensity, despite large variations in each attenuation component (lake water, phytoplankton, and epiphytes). In oligotrophic, silicate-poor lakes, the light attenuation above the submerged vegetation was dominated by the water itself, which accounted for 65–72% of the total attenuation. Phytoplankton and epiphytes were equal in importance to each other. In oligotrophic, silicate-rich lakes and lakes receiving a nitrogen supply above background level, the epiphytes were more abundant, accounting for about 50% of the light attenuation. In one lake with a high nutrient supply, the epiphytes were responsible for 86% of the light attenuation. A new method of measuring the effect of shading by the epiphytic community on submerged macrophytes is presented. The light attenuation caused by the phytoplankton and the epiphytes was investigated and related to the depth distribution of the submerged angiosperm, Littorella uniflora. It is shown that the biomass of the epiphytes increased more than the biomass of the phytoplankton in response to an external or internal nutrient loading. Shading by epiphytes is of decisive importance for the depth distribution of Littorella at increasing nutrient supply.     

Effects of an artificial protection structure on the sandy shore macrofaunal community: the special case of Lido di Dante (Northern Adriatic Sea)

Biomanipulation of eutropicated peaty lakes has rarely been successful; clear water with dense macrophyte stands fails to develop in most cases. It was unclear whether (1) high turbidity due to resuspension by benthivorous fish or wind is the major cause of low macrophyte density or whether (2) the establishment of submerged macrophyte stands is prevented by a lack of propagules, low cohesive strength of the lake sediment, high concentrations of phytotoxics, grazing by waterfowl and/or shading by periphyton growth. These hypotheses were tested in an experiment in a shallow peat lake in the Netherlands (Terra Nova). Removal of fish from a 0.5 ha experimental site resulted in clear water and the development of a dense (90% coverage) and species-rich (10 species) submerged vegetation. At a fish-stocked site and a control site the water remained turbid and dense macrophyte stands did not develop. The establishment of submerged macrophytes appeared not to be limited by a lack of propagules. Introduced plants grew poorly in turbid water, but very well in clear water. Exclosures showed that bird grazing reduced the plant biomass. In clear water grazing seemed to enhance the vegetation diversity. Periphyton development did not prevent plant growth in clear water. After the experiment, the fish stock was greatly reduced in the whole lake (85 ha), to test if (3) in a large lake, submerged macrophyte stands will not develop after biomanipulation. In the first season after fish reduction, transparency increased and species-rich submerged macrophyte stands developed, covering 60% of the shallow parts of the lake. Most of the species known to have occurred in the past re-established. The results indicate that high turbidity caused by benthivorous fish in combination with bird grazing were the major causes of the absence of submerged macrophyte stands in this lake. Abiotic conditions after the clearing of the lake were suitable for the growth of macrophytes. We infer that the restoration potential of submerged macrophyte stands in eutrophicated peaty lakes can be high, and results can be obtained quickly.     

Restoration of Botshol (The Netherlands) by reduction of external nutrient load: Recovery of the Characean community

The formerly rich characean community in Botshol with six species of which the rareNitellopsis obtusa andChara hispida dominated at many sites, decreased to only two species,Chara globularis andC. connivens, in the period 1980–1988. The macrophyteNajas marina also remained at some sites, and the aquatic mossFontinalis antipyretica and the filamentous algaVaucheria dichotoma predominated at many sites. These phenomena may have been due to eutrophication by the inlet of polluted water. This process of eutrophication was stopped by restoration measures in 1989, resulting in a lower phosphorus concentration (ca. 0.024 mg l^–1) and a higher water transparency. Immediately after these measures the Characeae community increased strongly in abundance and number of species. During the summer of 1990, and especially of 1991, a spectacular growth occurred ofChara connivens. Chara connivens was often accompanied byChara hispida. Other species with scattered occurrence wereChara aculeolata, C. aspera, C. contraria andC. Globularis. The reasons for the shift in dominance fromNitellopsis obtusa toChara connivens are discussed. One of the reasons may be the recent higher chloride content which is one of the consequences of the restoration measures.     

A comparison of natural and human determinants of phytoplankton communities in the Kentucky River basin,USA

Physical, chemical, and biological characteristics of the Kentucky River and its tributaries were assessed for one year to compare effects of seasonal, spatial, and human environmental factors on phytoplankton. Phytoplankton cell densities were highest in the fall and summer and lowest in the winter. Cell densities averaged 1162 (± 289 SE) cells m1^–1. Cell densities were positively correlated to water temperature and negatively correlated to dissolved oxygen concentration and to factors associated with high-flow conditions (such as, suspended sediment concentrations). Chrysophytes, diatoms, and blue-green algae dominated winter, spring, and summer assemblages, respectively. Ordination analyses (DCCA) indicated that variation in taxonomic composition of assemblages was associated with stream size as well as season.Spatial variation in phytoplankton assemblages and effects of humans was investigated by sampling 55 sites in low flow conditions during August. Phytoplankton density increased with stream size. Assemblages shifted in composition from those dominated by benthic diatoms upstream to downstream communities dominated by blue-green algae and small flagellates. Human impacts were assumed to cause higher algal densities in stream basins with high proportions of agricultural or urban land use than in basins with forested/mined land use. While density and composition of phytoplankton were positively correlated to agricultural land use, they were poorly correlated to nutrient concentrations. Phytoplankton diversity changed with water quality: decreasing with nutrient enrichment and increasing with conditions that probably changed species composition or inhibited algal growth. Human impacts on phytoplankton in running water ecosystems were as great or greater than effects by natural seasonal and spatial factors. Our results indicated that phytoplankton could be useful indicators of water quality and ecosystem integrity in large river systems.