DNA sequence analysis linguistic tools: contrast vocabularies, compositional spectra and linguistic complexity

This is a review of the methods based on counting oligomers in nucleotide and amino acid sequences. Such methods are analogous to the formal linguistic analysis of human texts. This review includes methods based on the calculation of observed occurrences (frequencies) of oligomers and their distribution, as well as those based on deviations between the observed and the expected occurrences (contrast words, genome signatures) in biological sequences. Both types of methods have a wide range of sensitivity and can identify homologous as well as functionally and taxonomically related sequences.     

Multi-dimensional linguistic complexity

Linguistic complexity is a simple and elegant way of calculating complexity of strings of data. It is based on the concept that the greater the vocabulary one uses, the more complex the data. Until now, it has been used only on one-dimensional data, such as DNA and protein sequences and various human language texts. The basic definition can be extended to higher dimensions, thus allowing a practical and simple calculation of linguistic complexity of images, 3D objects and other multi-dimensional data. A simple extension of linguistic complexity is introduced, followed by 2D presentations and a discussion of parametric considerations. An example of linguistic complexity calculations, demonstrating its image processing and medical diagnostic power is presented. The subjects of this paper are patent application pending.     

Isolation by distance, linguistic similarity, and the genetic structure on Bougainville Island

Previous research has revealed extensive genetic variation among villages on Bougainville, in the Solomon Islands. Using previously published gene frequency data for seven loci, the role of isolation by distance in structuring genetic variation on Bougainville was reanalyzed. Newer methods of kinship estimation show that earlier estimates of the isolation by distance parameters were low. The fit of the model is highly significant (R2 = 0.409; P less than 0.001), and the parameter estimates indicate high isolation: a = 0.0538, b = 0.1978, L = -0.0057. Several methods of residual analysis were applied in order to determine factors affecting the fit of the model. Linguistic similarity has a significant effect on genetic variation once the effects of geographic distance are taken into account. Population-specific deviations from the expected model may be explained, in part, in terms of population history. Compared to other human populations, Bougainville Island shows an even greater among-group variation than has been suggested previously.     

Temporal information in speech: acoustic, auditory and linguistic aspects.

The temporal properties of speech appear to play a more important role in linguistic contrasts than has hitherto been appreciated. Therefore, a new framework for describing the acoustic structure of speech based purely on temporal aspects has been developed. From this point of view, speech can be said to be comprised of three main temporal features, based on dominant fluctuation rates: envelope, periodicity, and fine-structure. Each feature has distinct acoustic manifestations, auditory and perceptual correlates, and roles in linguistic contrasts. The applicability of this three-featured temporal system is discussed in relation to hearing-impaired and normal listeners.     

Bacterial linguistic communication and social intelligence

Bacteria have developed intricate communication capabilities (e.g. quorum-sensing, chemotactic signaling and plasmid exchange) to cooperatively self-organize into highly structured colonies with elevated environmental adaptability. We propose that bacteria use their intracellular flexibility, involving signal transduction networks and genomic plasticity, to collectively maintain linguistic communication: self and shared interpretations of chemical cues, exchange of chemical messages (semantic) and dialogues (pragmatic). Meaning-based communication permits colonial identity, intentional behavior (e.g. pheromone-based courtship for mating), purposeful alteration of colony structure (e.g. formation of fruiting bodies), decision-making (e.g. to sporulate) and the recognition and identification of other colonies - features we might begin to associate with a bacterial social intelligence. Such a social intelligence, should it exist, would require going beyond communication to encompass unknown additional intracellular processes to generate inheritable colonial memory and commonly shared genomic context.     

Allozymic, morphological, phenological, linguistic, plant use, and nutritional data ofBenincasa Hispida (Cucurbitaceae)

Benincasa hispida, from tropical Asia, is cultivated primarily for its edible fruit. To explore its domestication and ethnobotany, we made collections from two regions where it may have been domesticated: (1) Southern China/Southeast Asia, represented by southern Yunnan Province (China) and northern Laos; and (2) the Indian subcontinent, represented by southeastern Nepal. Domestication has resulted in diverse fruit sizes, shapes, and colors; seed sizes and shapes; and, in some accessions, the loss of tendrils. Modern cultivars have larger fruit, earlier flowers, and lower nutritional content than traditional cultivars. Allozyme diversity was low, divergence between these two regions was low, and these results do not clarify the place of domestication. The greater morphological diversity of plants from Yunnan and Laos, as compared to Nepal, suggests domestication in the former region. In all accessions, male flowers precede females.Benincasa hispida is prominent in some traditional stories and rituals.     

Evolutionary approaches to cultural and linguistic diversity

Evolutionary approaches to cultural change are increasingly influential, and many scientists believe that a 'grand synthesis' is now in sight. The papers in this Theme Issue, which derives from a symposium held by the AHRC Centre for the Evolution of Cultural Diversity (University College London) in December 2008, focus on how the phylogenetic tree-building and network-based techniques used to estimate descent relationships in biology can be adapted to reconstruct cultural histories, where some degree of inter-societal diffusion will almost inevitably be superimposed on any deeper signal of a historical branching process. The disciplines represented include the three most purely 'cultural' fields from the four-field model of anthropology (cultural anthropology, archaeology and linguistic anthropology). In this short introduction, some context is provided from the history of anthropology, and key issues raised by the papers are highlighted.     

语言复杂性理论及临床应用

复杂语言结构和简单语言结构相比,哪一种更能促进语言能力提高,是语言心理研究的核心问题。近年来,国外出现大量语言复杂性的研究。本文对语言复杂性的理论、评估、原理及应用作了介绍,并对语言复杂性理论与教学理论的联系以及在应用中需要考虑的问题做了简单评述,旨在对语言学习和语言缺陷治疗提供帮助。     

Ethnohistorical processes,demographic structure and linguistic determinants of the Island of Vis

The present paper aims at describing the most relevant background data on geomorphological, economic, ethnohistoric, demographic and linguistic features of the island of Vis. As an introduction to future holistic anthropological research on the island, it seeks to identify both internal and external impulses of change and/or continuity of the island population structure within a wider socio-cultural and historical context. The ethnohistorical and demographic data indicate a higher degree of isolation throughout history as compared to other islands in the region and a continuous depopulation trend during the last century. The analysis of the existing linguistic data on two main settlements shows a certain amount of intradialectal micro-differentiation, which is mainly due to various social and non-linguistic reasons.     

Genetic,historical and linguistic perspectives on the origin of the Kelantanese Malays

The Kelantanese Malays who resided in the remote northeastern regions of the Malay Peninsula in the Kelantan state are believed to have a unique genetic signature. The objective of this review is to analyze the populational sub-structure of the Kelantanese Malays from historical, genetic and linguistic perspectives. Historical data suggest that the Semang were composed of the Jahai, Bateq and Kensiu sub-tribes, whereas the Senoi were composed of only the Temiar sub-tribe. The Mendriq sub-tribe is believed to be the first group of aborigines to land in Kelantan. Subsequently, genetic analysis showed that the Kelantanese Malays are an independent clade at the base of the phylogenetic tree and contain genetic material similar to that of the Semang, specifically the Jahai and the Kensiu sub-tribes. The genetic data are supported by the fact that the Aslian language, a branch of the Austroasiatic languages that is widely spoken by the Semang, was potentially transmitted through agricultural activities. However, the potential limitation of this mini-review is the lack of primary reliable sources covering the historical, linguistic and genetic features of the Kelantanese Malays.     

The measurement of linguistic change

Summary Two methods for measuring the amount of linguistic change are described: 1. It is possible to measure the correspondence between two phoneme inventories of two periods in a language's development in the same way as in information theory between the inventories of the transmitted and received symbols (measure of correspondence B). 2. This first method, however, does not measure the development of a phonologic pattern. Therefore the correlation of similarity is computed (as applicated in the psychology of development).