Developing biological indicators from diverse data: The Potomac Basin-wide Index of Benthic Integrity (B-IBI)

A Basin-wide Index of Benthic Integrity (B-IBI) was developed to uniformly assess aquatic ecosystem health of non-tidal, wadeable streams in the multi-jurisdictional Potomac River basin (US). Multiple datasets were merged and used to identify stream classes and discriminating biological metrics. The index (aggregated metric scores) accurately identified 95% of impaired sites. A jackknife cross-validation procedure confirmed the accuracy of the B-IBI. B-IBI assessments generally compare favorably to basin states’ assessments derived from the same data. A habitat quality matrix which includes an indicator of anthropogenic alterations and disturbances is recommended. The Potomac B-IBI is more useful than existing state-specific indexes for stream health comparisons across jurisdictional boundaries and basin-wide. The Potomac B-IBI can improve understanding of water quality issues in the basin and enhance the abilities of water quality managers to make well-informed decisions concerning the basin's non-tidal waters.     

Analysis of macrobenthic communities in Flanders,Belgium, using a stepwise input variable selection procedure with artificial neural networks

The effect of environmental conditions on river macrobenthic communities was studied using a dataset consisting of 343 sediment samples from unnavigable watercourses in Flanders, Belgium. Artificial neural network models were used to analyse the relation among river characteristics and macrobenthic communities. The dataset included presence or absence of macroinvertebrate taxa and 12 physicochemical and hydromorphological variables for each sampling site. The abiotic variables served as input for the artificial neural networks to predict the macrobenthic community. The effects of the input variables on model performance were assessed in order to identify the most diagnostic river characteristics for macrobenthic community composition. This was done by consecutively eliminating the least important variables and, when beneficial for model performance, adding previously removed ones again. This stepwise input variable selection procedure was tested not only on a model predicting the entire macrobenthic community, but also on three models, each predicting an individual taxon. Additionally, during each step of the stepwise leave-one-out procedure, a sensitivity analysis was performed to determine the response of the predicted macroinvertebrate taxa to the input variables applied. This research illustrated that a combination of input variable selection with sensitivity analyses can contribute to the development of reliable and ecologically relevant ANN models. The river characteristics predicting presence or absence of the benthic macroinvertebrates best were the Julian day, conductivity, and dissolved oxygen content. These conditions reflect the importance of discharges of untreated wastewater that occurred during the period of investigation in nearly all Flemish rivers.     

Critical influence of seasonal sampling on the ecological quality assessment of small headwater streams

Variability in the ecological quality assessment of reference sites was tested on small headwater streams in Ireland. Although headwater streams constitute a large portion of the river channel network, they are not routinely monitored for water quality. Various metrics were used including the Irish Q-value and the newly developed Small Streams Risk Score (SSRS), and metrics applied elsewhere in the Atlantic biogeographic region in Europe, including the Biological Monitoring Working Party score (BMWP), the Average Score per Taxon (ASPT), the Ephemeroptera, Plecoptera and Trichoptera taxa (EPT), the Belgium Biotic Index (BBI) and the Danish Stream Fauna Index (DSFI). The AQEM (version 2.5a) assessment software was used to apply some of these metrics. The spring and summer datasets are used to test the performance of biotic metrics with respect to season, and the applicability of their use to assess the ecological quality of wadeable streams. The quality status of most sites assigned by the various metrics was high using the spring invertebrate data, and an apparent considerable deviation in quality status occurred when the summer data was applied. Seasonal differences were noted using all the biotic indices and are attributed to the absence of pollution-sensitive groups in summer. Seasonal variability in the water quality status was particularly evident in acidic streams draining non-calcareous geologies with peaty soils that had relatively lower numbers of taxa. Some indices applied reflect a greater seasonal difference in the quality category assigned. The least amount of variability between seasons was obtained using the ASPT and the SSRS risk assessment system. Results suggest that reference status is reliably reflected in spring when more pollution-sensitive taxa were present, and that a new ecological quality assessment tool is required for application in summer when impacts may be most severe. This highly heterogeneous freshwater habitat seems to have too few taxa present in the summer to reliably determine the ecological quality of the stream using the available indices. Handling editor: R. Bailey     

A Feasibility Study to Monitor the Macroinvertebrate Diversity of the River Nile Using Three Sampling Methods

The River Nile is one of the world’s major rivers. Its’ catchment in Egypt has a population of 75,000,000. River flow is highly regulated and there are known discharges of pollutants. 1035 km of the river downstream of the Aswan high dam was studied to test the hypothesis that representative qualitative samples can be used to estimate macroinvertebrate biodiversity. Benthic macroinvertebrates are difficult to sample in large rivers and a reliable sampling strategy is required to evaluate their ecological status. Three methods for sampling have been investigated. Ekman Grab, macrophyte sweep netting and Artificial Substrate Samplers (ASS) were used to sample 15 sites from Aswan to Cairo between September 2001 and June 2002. Organisms were identified to species level where possible. Taxon accretion curves indicated that the all taxa present at a site should be collected using either 15 grab samples, 10 macrophyte samples or 5 ASS. The best time to sample was May–June. The biodiversity of macroinvertebrates in the Nile was recorded as 50 taxa with values of 7–31 at individual bank-side sites. Mid-stream biodiversity was much lower (0–19). Lowest biodiversity occurred at sites with known pollution inputs whilst highest occurred at sites with high levels of sedimentation. A regular programme for biomonitoring is recommended which will allow current status to be confirmed and future changes detected.     

Development and validation of a Biotic Index for evaluation of environmental quality in the central region of Argentina

The Suquía River (Córdoba, Argentina) has become an important issue because it flows into Mar Chiquita Lake, one of the largest saline lakes in the world. This water body, together with the expansive swamps of the Dulce River on the northern shore and the mouth of Suquía and Xanaes River, is considered one of the most important wetlands in Argentina in terms of biodiversity in a range of freshwater to very saline environments. Nevertheless, the presence of densely populated urban settlements and the increasing environmental impact due to anthropogenic activities characterize the central and lower sections of Suquía River Basin. Fishes are particularly affected and change their distribution and abundance as a consequence of the environmental deterioration. We collected information on fish fauna to develop and validate a Biotic Index to assess degradation of the Suquía River Basin. We classified fish species according to their sensitiveness or tolerance to environmental degradation, based on their distribution and abundance variations along a water quality gradient in order to design a Biotic Index for Suquía River Basin. The set of metrics used in the Biotic Index calculation was conformed by: the abundance of Astyanax eigenmanniorum, Rineloricaria catamarcensis, Gambusia affinis and Cnesterodon decemmacultus, the proportion of sensitive species richness, and the proportion of tolerant species richness. They clearly distinguished between the impaired and referenced sites. We demonstrated that it is possible to use fish as indicators of water quality in Córdoba Province (central part of Argentina) in order to carry out rapid and relatively inexpensive monitoring and conservation programs. The application of this Biotic Index showed that fish assemblages reflect the watershed conditions and are sensitive to changes in water quality across the environmental gradient.     

The macroinvertebrate fauna of water hyacinth fringes in the Sudd swamps (River Nile,southern Sudan)

The water hyacinth now forms an almost ubiquitous fringe to open-water habitats in the permanent wetland of the Sudd. In a typical river-lake the fringe varied between 9 and 16 m in breadth with highest plant biomasses in the centre. Largest quantities of macroinvertebrates in hyacinth root-mats were obtained in drop-trap samples within 6 m of the open water. They were dominated by coleopterans, odonatans, gastropods andCaridina nilotica. Outer edges of the fringe offer easy access, good dissolved oxygen concentrations, and a variety of potential food resources for aquatic invertebrates. By contrast the less hospitable landward zone contained a reduced fauna in which coleopterans, hydracarines and gastropods were prominent. A marked reduction in the numbers of invertebrates in lift-net samples of detached hyacinth rafts was attributed to browsing by fish. Hyacinth root-mats appear to have replaced the niches formerly provided by those of the Nile cabbage for aquatic invertebrates in the Sudd.     

Study of the Effect of Different Techniques on Diversity of Freshwater Hyphomycetes in the River Nile (Upper Egypt)

Four different techniques were applied, lead mapping of Eucalptus rostrata; randomly leaf sampling; Millipore filtration; spores in foam, for the study of aquatic hyphomycets communities in the River Nile. Triscelophorus monlosporus, Anguilospora longissima, Flagellospora curvula and Tetracladium marchalianum were the dominant species in all the techniques used. Aquatic hyphomycetes diversity was high by using leaf mapping (23 species) and randomly leaf sampling (30 species) but it was low by using Millipore filtration (11 species) and spores in foam (8 species) techniques.     

A multimetric index based on benthic macroinvertebrates for evaluation of Atlantic Forest streams at Rio de Janeiro State, Brazil

This study describes the application of a protocol for biological assessment of water quality at first to third order streams at Serra dos órg?os, an area covered by Atlantic Forest in Rio de Janeiro State, Brazil. Major impacts in the region are domestic effluents and deforestation. Our main objective is to establish biocriteria for the establishment of the Serra dos órg?os Multimetric Index (SOMI) based on benthic macroinvertebrates. We used data from previous studies, sampled by experienced biologists, from 1999 through 2002. The benthic macroinvertebrate community was sampled in 12 reference sites and seven impaired sites in three river basins: Guapimirim, Macaé and Grande, all from the same bioregion. From the 22 tested metrics, 6 were included in the SOMI (% Diptera, % Coleoptera, Family Taxa, EPT Taxa, BMWP-CETEC and % Shredders). Scores (5, 3 or 1) were developed for these metrics to allow for aggregation into the index. Seven intermediately impaired sites were used for evaluating the applicability of the multimetric index. We concluded that the SOMI is a robust easy-to-apply tool for biomonitoring programs in the Serra dos órg?os region, south-east Brazil. Electronic Supplementary Material Supplementary material is available for this article at and is accessible for authorised users. Handling editor: D. Dudgeon     

An advanced Index of Biotic Integrity for use in tropical shallow lowland streams in Costa Rica: Fish assemblages as indicators of stream ecosystem health

This paper presents an advanced version of the Index of Biotic Integrity (IBI), a multimetric index to indicate ecosystem health. The multimetric index has been adapted in such a way that it not only indicates overall condition but also specific causes of environmental disturbance. The newly developed index (a) uses data of tolerant as well as intolerant species in a single metric to indicate environmental disturbance, (b) does not require knowledge about species from the literature, and (c) can be applied to artificial landscapes.The metrics proposed here consist of indicator species assemblages that are selected directly for their relationship with an environmental component or specific type of environmental degradation. Thus, each metric indicates a type of environmental concern, which enables conservation practices to be targeted more effectively. Species assemblages for each single metric consist of a combination of species that can be negatively and positively related to environmental disturbances, providing a better indication of stream ecosystem health.The area studied was assumed to be too diverse for one single index. Canonical Indirect-Gradient Principal Component Analysis indicated that the optimal division of subindices based on stream typology was for streams with drainage basin sizes <10 km² and >10 km². Pearson Product-Moment Correlations were used to identify relationships between anthropogenic disturbances and the composition and abundance of fish species at impacted as well as undisturbed sites. This index proved to be useful for indicating overall stream ecosystem health as well as local onsite environmental disturbances or the environmental components of greatest concern. This index does require extensive information about measured levels of anthropogenic disturbances with the accompanying composition and abundance of fish species.     

A new record of Myxobolus brachysporus and M. israelensis in the tilapia (Oreochromis niloticus) collected from the Nile River,Egypt

The present study was carried out as part of an ongoing general survey for myxosporean parasites infecting tilapias in the River Nile, Egypt. In the present study, 77 Nile tilapia (Oreochromis niloticus) were collected from boat landing sites at Beni-Suef governorate, Egypt and examined for the myxosporean infection. The infection was encountered as a huge number of free spores in the kidney and the spleen. The infection showed a prevalence of 51.9% (40/77) for Myxobolus brachysporus while it was 25.9% (20/77) for Myxobolus israelensis. Mature spores of M. brachysporus were ellipsoidal and measured 8.6 × 13.2 μm. The polar capsules were subcircular with 5–6 filament turns and measured 4.7 × 3.6 μm. Spores of M. israelensis were ellipsoidal in the frontal view and fusiform in the lateral view. Spore measurements were 13.4 μm long and 8.7 μm wide. The polar capsules were elongated with 6–7 filament coils and measured 8.6 × 3.1 μm. The findings presented here proved that tilapia fishes in the Nile River are still suffering from infections with Myxobolus species. Therefore, further studies should be carried out to survey the Myxobolus infection among tilapias under culture conditions to clarify the pathological impacts of this parasite in tilapias aquaculture.     

Measuring the responses of macroinvertebrate communities to water pollution: a comparison of multivariate approaches, biotic and diversity indices

The responses of macroinvertebrate communities to pollution by sewage effluent in the River Trent system (UK) were investigated using a variety of multivariate approaches, biotic indices and diversity indices. It was found that multivariate analyses clearly illuminated the change of community structure along the pollution gradient. CY Dissimilarity Measure (CYD)-based Non-Metric Multidimensional Scaling (NMDS) appeared to perform better than DCA and clustering. Species richness, the BMWP, BMWP-ASPT, the Chandler Score, Chandler-ASPT could detect the effects of major pollution. However, these indices showed varying sensitivity to different ranges of pollution, for example, Chandler-ASPT and BMWP-ASPT are more sensitive to the change in clean/slightly polluted range than in the moderate/very polluted range. The diversity indices were the least informative. The advantages and disadvantages of the various approaches were discussed.     

Effects of Landscape and Riparian Condition on a Fish Index of Biotic Integrity in a Large Southeastern Brazil River

Environmental conditions of a large river in southeastern Brazil were assessed by evaluating fish assemblage structure (index of biotic integrity, IBI), landscape use (forest, pasture, urban area, and tributary water) and riparian condition. A survey of the 338 km-long middle reach of the Rio Paraiba do Sul, containing a large urban-industrial complex, was conducted in two seasons: summer/wet and winter/dry. Fish were sampled with a standardized level of effort twice at seven sites, between March 2001 and April 2002, by gill nets, cast nets, sieves and seines. Riparian condition was evaluated by direct observations, and land use maps were used to assess landscape condition of an 8 km² buffer surrounding each site. IBI scores ranged from 5 to 36 (out of a possible range of 4–40), with lowest values at an urban-industrial landscape, and highest scores upstream and downstream, indicating the river’s recovery capacity. The most appropriate time to assess IBI was during the winter/dry period, when sampling was more effective and the IBI was more sensitive to changes in environmental quality. Landscape use and riparian condition were correlated, and IBI was positively correlated with % pasture, % tributary area, and riparian condition, but negatively correlated with % urban area. In some cases urban areas eliminated riparian woody vegetation, destabilizing site physical habitat structure.     

Euhydrophyte communities of the River Nile and its impoundments in Egyptian Nubia

The River Nile and its two impoundments, the Aswan Reservoir and Lake Nasser, are important habitats for submerged and floating-leaved freshwater macrophytes (euhydrophytes) in the desert region of Egyptian Nubia. Ordination and classification analysis of survey data collected during the period 1980–1986 suggested that the Aswan High Dam forms a man-made vegetational boundary, delineating two basic macrophyte community types. In Lake Nasser a community dominated by Najas spp. is present. In the Aswan Reservoir and the R. Nile downstream of the old Aswan Dam the euhydrophyte community is dominated by a Potamogeton crispus — Ceratophyllum demersum association. Differences between the two community types appear to be related to differences in physical factors (e.g. water level fluctuation and flow regime), and water chemistry, to phenological factors, and to the differing successional ages of the macrophyte communities of the Nile system upstream and downstream of the Aswan High Dam. There is some evidence for depth zonation of the submerged macrophyte community in both lake and river habitats. Strategy analysis of the euhydrophyte communities present upstream and downstream of the High Dam, over the period 1963–89, indicated that successful established-phase strategy types were similar on both sides of the dam. In the long term there seems little to prevent euhydrophyte species at present confined to below the High Dam from crossing this boundary to colonise Lake Nasser.     

The importance of water-level fluctuation for the conservation of shallow water benthic macroinvertebrates: an example in the Andean zone of Chile

Many researchers have shown the importance of water chemistry and benthic habitat characteristics for the conservation of the freshwater macroinvertebrate biodiversity. However, few authors have examined the physical effect of extreme water-level fluctuations in lakes. The present study set out to determine, through a comparative study between a regulated lake (Laja Lake, LL) and an unregulated lake (Icalma Lake, IL) of the Andean zone of southern Chile, how man-made disturbances of the natural hydrological regime affect the structure of the benthic macroinvertebrate community. The results showed LL had very low values for species richness, density and biomass in comparison with IL, and the community was composed mainly of few individuals belonging to opportunistic taxa such as Chironomidae and Naididae. We suggest that the low values in the regulated lake are potentially explained by littoral zone factors driven by the water-level fluctuations such as: desiccation, freezing of the biota, removal of organic particles from the sediment and absence of aquatic macrophytes.     

Species richness and phenology of vegetation along irrigation canals and drains in the Nile Delta,Egypt

This study evaluates the species richness, phenology and effect of environmental factors on the composition of canal and drain vegetation in the Nile Delta, Egypt. Altogether, 365 stands were sampled along the terraces, slopes, littoral zones and water zones of 28 canals and 10 drains. Smooth species compositional changes were found in the first three zones. The slope plant community has the highest total number of species and species richness and a medium value of species turnover. The water zone has the lowest values of these variables.The number of species with seedlings and vegetative plants had two peaks: one in winter and the second in summer, which was related to the contrasted behaviour of the winter and summer weeds. The number of species with vegetative and fruiting plants was relatively higher, while the number with dormant plants was relatively lower in the canal vegetation when compared to that of the drains. The number of species with vegetative, flowering and fruiting plants increased with the decrease of canal-drain width.     

Ecological effects of urban stormwater runoff on benthic macroinvertebrates inhabiting the Green River,Massachusetts

Although it has been demonstrated that urban stormwater can alter the quality of receiving waters, the corresponding impact on aquatic biota remains essentially undocumented. A year-long intensive study, therefore, was implemented to monitor and describe the ecological effects exerted by urban runoff on benthic macroinvertebrates.Rock-filled, basket-type artificial substrates deployed periodically in nonurban and urban river reaches yielded collections of macroinvertebrates that furnished data for: (1) species diversity (the Brillouin index, H), (2) hierarchical diversity, (3) major taxa composition, and (4) collection dissimilarity at the species level.The overall results from these four analytical procedures strongly indicate that the macrobenthic community became progressively disrupted downstream in the urban reach. The high degree of correspondence between the known sources of urban runoff and the observed effects on the benthic community are forceful arguments that urban runoff is the causal agent of disruption. The impact is not confined to periods following heavy rains. Instead the pollutants appear to remain in the system. The stress imposed by them was most acute during the summer low flow and was probably localized in or near the stream bed.To assess the impact of urban runoff on an aquatic ecosystem, physical, chemical, and biological monitoring should routinely consider the stream bed microzone. Urban runoff pollutant loading standards must take into account the apparent long-term residence of pollutants in the substrate and the associated stress of summer low flows.     

Population dynamics of Eichhornia crassipes (C. Mart.) Solms in the Nile Delta,Egypt

The present study aims to evaluate the growth and seasonal allocation of the biomass of water hyacinth (Eichhornia crassipes) under natural conditions in the south Mediterranean region (the Nile Delta, Egypt). In this study, the population characteristics (density, morphology and primary production) over a one‐growing‐season cycle were described. In the Nile Delta, the biomass of the shoot and root systems of E.crassipes was sampled monthly along three water courses from April 2014 to November 2014 using five quadrats (each of 0.5 m × 0.5 m) at each water course. The shoot system started to grow in April (121 g/DM/m²), reached a maximum biomass of 887 g/DM/m² in July, and then decreased until reaching a minimum of 299 g/DM/m² in November. The biomass of the root system increased from 75 g/DM/m² in April to a maximum of 235 g/DM/m² in August and decreased to a minimum of 100 g/DM/m² in November. Water hyacinth allocated ca. 2% of its total biomass to stolons, 22% to laminae, 24% to roots and 52% to petioles. Peak density as high as 144 individual/m² occurred in May, but it reduced to 33–50 individual/m² during July to November. The average rate of change of biomass was maximum (17.3 g/DM/m²/day) during April and May and minimum (?8.9 g/DM/m²/day) during October and November. Relative growth rates were found to be lowest during the cooler months, October and November (?0.017 g/DM/g /day), whereas highest yields were recorded during the spring months, April and May (up to 0.044 g/DM/g/day). The correlation coefficients between the water characteristics and the first two canonical correspondence analysis axes indicated that the separation of the population parameters of water hyacinth along the first axis was negatively influenced by Zn. On the other hand, the second axis was positively correlated with electric conductivity, total N, total P, Mg, Na, K and Mn and negatively with pH.     

Small scale application and assessment of a Index of Biotic Integrity for a large boreal river

Modifications and use of Karr’s Index of Biotic Integrity (IBI) for assessing the effects of anthropogenic impacts to aquatic ecosystems have typically occurred using data collected at the macro scale. However, some non-point sources of habitat degradation occur at small scales. One possible source of perturbation to fish habitat in boreal rivers is the application of rip rap shoreline armouring in human use areas. In this study we assess the use of IBI in a small scale setting and discuss the potential impact of rip rap shoreline armouring. We captured small and juvenile fishes weekly during 2002–2003 from 12 sample sites within the littoral zone of a human use area using a modified beach seine. Principal component analysis (PCA) was performed on the data to examine the relationship between species composition and IBI scores. We also performed PCA on the IBI metrics to assess our modifications. The IBI method produced higher scores for armoured sites than for unarmoured sites. We found a strong rank order correlation (Spearman’s ρ > 0.93; p < 0.001) between the modified IBI scores and the first principal component, suggesting that Karr’s original empirically-based IBI is strongly linked to species composition. We found a high degree of redundancy between the metrics of the IBI that validate our modifications. These results suggest that IBI can be a suitable method for assessing non-point impacts from within a small study area. Our results also indicate that fish habitat from rip rap armoured sites within the test area had consistently higher IBI scores that unarmoured sites.     

Laccase activity of lignicolous aquatic hyphomycetes isolated from the River Nile in Egypt

Eleven species of aquatic hyphomycetes were isolated from 92 samples of different lignin sources (unidentified wood segments, skeleton and neck of leaves, bark). The most common species were Pyramidospora casuarina (on 3.7% of samples), Triscelophorus monosporus (3.2%) and Flagellospora curvula (3%). Varying levels of laccase activity were present in most of the fungi included in this study. The laccase plate assay was found to be much less reliable than the spectrophotometric assay. Several factors including type of growth medium, the media pH and assay pH had marked effects on laccase activity. A few species produced high levels of laccase in both malt extract (ME) medium and low N medium; however, a majority of the species produced laccase in low nitrogen (N) medium (pH 4.5) but not in the ME medium. When the tested species were grown in low N medium at pH 4.5, six species showed acidic laccase (pH 4.5) activity; of these, four also showed alkaline laccase (pH 8.2) activity. Alatospora acuminata and Tetracladium marchalianum exhibited laccase activity only when grown in the low N medium at pH 8.2. These results indicate that aquatic hyphomycetes may play a role in the decomposition of lignin materials in freshwater environments. This revised version was published online in June 2006 with corrections to the Cover Date.