Temporal and spatial variability of pelagic wild fish assemblages around Atlantic bluefin tuna Thunnus thynnus farms in the eastern Adriatic Sea

The abundance and size structure of wild fishes aggregated around the sea‐cages of two commercial Thunnus thynnus farms, including control locations, were assessed and compared over a 1 year period. The T. thynnus farms were located in the eastern Adriatic Sea, offshore of the islands of Ugljan and Bra?. Fish assemblages were evaluated through visual census using scuba at 2 month intervals at two sites within each farm. The data suggest that wild fish assemblages at the study sites differed greatly; 20 species occurred at the Ugljan farm and 17 at the Bra? farm, while only seven species were observed at the control locations. The abundance and diversity of wild fish assemblages were greater at the farms in comparison to control locations. The most abundant families were Sparidae and Belonidae (>80% of aggregated fishes). At both farms, the abundance and diversity of wild fishes were highest during summer, while diversity was lowest in winter and was mainly characterized by schools of bogue Boops boops and garfish Belone belone. Variability was also detected in spatial assemblages between farms; B. boops and B. belone were the most abundant species for the overall study at the Bra? farm, while B. belone and saddled bream Oblada melanura were the most abundant at the Ugljan farm. The settlement also played a significant role in farm‐associated fish assemblages, as both juveniles and advanced juveniles were common residents at farms. The majority of species which settled at the farms belonged to the sparids. Results indicate that aggregations of wild fishes at T. thynnus farms are persistent year‐round, though the assemblage compositions and size structures of dominant species vary in respect to location and season.     

Response of Benthic Protozoa and Thraustochytrid Protists to Fish Farm Impact in Seagrass (Posidonia oceanica) and Soft-Bottom Sediments

We investigated the impact of fish farm biodeposition on benthic bacteria, thraustochytrid protists, and heterotrophic protozoa (nanoflagellates and ciliates) in an oligotrophic area of the Mediterranean Sea. The fish farm impact was investigated both on a seagrass (Posidonia oceanica) bed and on soft bottom sediments. In both systems, sediment samples were collected with a multicontrol sampling strategy (i.e., beneath the fish farm and at three control sites per system). The uneaten food pellets supplied to the fish determined the accumulation of sediment organic matter and the enhancement of protein content in impacted sediments (both seagrass bed and soft sediments). In both systems, the abundance and biomass of heterotrophic protists increased significantly beneath the fish farm, but the structure of the protist assemblages responded differently in vegetated and unvegetated sediments. Thraustochytrid abundance increased significantly in impacted seagrass. These results provide evidence that the structure of protist assemblages respond significantly to fish farm biodeposition and indicate that the monitoring of these benthic components provides complementary information for the assessment of the fish farm impact on the benthic systems.     

Changes in demersal wild fish aggregations beneath a sea-cage fish farm after the cessation of farming

Demersal, non-cryptic, wild fishes were counted in replicate 100 m² transects beneath a floating sea-cage fish farm and two nearby sandy locations at Gran Canaria (Canary Islands, eastern Atlantic) four times before and after the cessation of farming. Cessation of farming involved the removal of farmed fishes and ceasing of the daily feeding, although farm structures (cages and moorings) remained. A 'beyond-BACI' sampling design provided the framework to detect the effect of the cessation of farming, which produced qualitative and quantitative changes in the composition and structure of the fishes assemblages beneath the sea-cage fish farm compared with two nearby controls. The aggregative effect on wild fishes due to the existence of the farm decreased from c. 50 times compared to nearby controls when the farm was in full operation to less than two times when only the farm structures remained. Abundances of particulate organic matter feeders (large-sized mugilids), large benthic chondrichthyid rays and Pagellus spp. declined markedly at the fish farm after the cessation of farming, suggesting that the removal of daily feeding was responsible for their disappearance. In contrast, abundances of herbivores, benthic macro- and meso-carnivores were similar beneath the fish farm both before and after the cessation of farming. Benthic macro-carnivores, however, were more abundant beneath the sea-cages compared to control locations, supporting the hypothesis that the increase in the physical structure beneath farms plays a role in aggregating these species. Sparids occurred beneath the sea-cages only after the cessation of farming, while the two natural control locations did not show differences from before to after the cessation of farming. Overall, the results show that the wild fish assemblage beneath the farm partially changed after the cessation of farming to a more natural state, approaching the assemblages observed at the control sites.     

The environmental impact of Mediterranean cage fish farms at semi-exposed locations: does it need a re-assessment?

During spring and summer 2003, we measured a variety of chemical and biological parameters in five medium-sized, Mediterranean cage farms that exploit semi-offshore conditions, and controlled the supply of fodder. The objective was to assess whether modern cage farms proliferating at semi-offshore sites exert environmental impact levels equivalent to the levels described from more traditional cage farms located in shallow, sheltered sites. In the water column, we examined the concentration of dissolved inorganic nutrients and heterotrophic bacteria in both surface and near-bottom water. At the bottom, we examined the concentrations of benthic chlorophyll a, phaeophytin and organic matter in sediments, the granulometric structure of the sediment, and the taxonomic (at the family level) abundance of benthic macroinvertebrates. For most parameters, we found no substantial differences between farm and control sites. Rather, most variation was explained as a function of depth (surface versus bottom water) or season (spring versus summer conditions). Deviations of farm values from control values, when they occurred, were small and did not indicate any significant impact on either bacterioplankton or benthic chlorophyll. Only one of the five farms studied exerted a detectable impact on the benthic macroinvertebrate community immediately under the cages. These results suggest that medium-sized fish farms located on semi-exposed western Mediterranean coasts have fewer environmental impacts than traditional fish farms located in shallow, sheltered sites. Impact characterization in these new farms may require refinement of the standard approach to deal with rapid dispersal of effluents and sub-lethal levels of environmental disturbance.     

Extensive Aggregations of Wild Fish at Coastal Sea-Cage Fish Farms

We present evidence of a largely undocumented environmental effect of coastal sea-cage fish farms on wild fish. We estimated the total abundance and biomass of wild fish aggregated in the immediate vicinity of nine fish farms in the Mediterranean Sea and one farm off the east coast of Australia. Estimates of wild fish aggregations ranged from 2000 to 86000 individuals and from 100 kg to 38.5 tons of fish per farm and were always greater than control locations. Particularly large aggregations (>30000 fish, > 12 tons) occurred at half of the farms. Aggregations were temporally stable for weeks to months and most wild fish associated with farms (88%) were of adult size. Potential effects of such large aggregations of wild fish in the immediate vicinity of fish farms include increased vulnerability to fishing and pathogen transfer between caged and wild fish. We suggest specific legislation should be enacted wherever large aggregations of wild fish occur around fish farms to enhance the positive and reduce the negative effects of association.     

A global quantitative synthesis of local and landscape effects on wild bee pollinators in agroecosystems

Bees provide essential pollination services that are potentially affected both by local farm management and the surrounding landscape. To better understand these different factors, we modelled the relative effects of landscape composition (nesting and floral resources within foraging distances), landscape configuration (patch shape, interpatch connectivity and habitat aggregation) and farm management (organic vs. conventional and local‐scale field diversity), and their interactions, on wild bee abundance and richness for 39 crop systems globally. Bee abundance and richness were higher in diversified and organic fields and in landscapes comprising more high‐quality habitats; bee richness on conventional fields with low diversity benefited most from high‐quality surrounding land cover. Landscape configuration effects were weak. Bee responses varied slightly by biome. Our synthesis reveals that pollinator persistence will depend on both the maintenance of high‐quality habitats around farms and on local management practices that may offset impacts of intensive monoculture agriculture.     

Spatial variation in relative abundance of a widespread, numerically dominant fish species and its effect on fish assemblage structure

Collections of fish assemblages from streams in the midwestern United States were used to examine assemblage-level effects of spatial variation in relative abundance of the red shiner, Cyprinella lutrensis, a widespread and highly abundant minnow species. This species has been widely introduced outside its native range and is suspected to have impacted local assemblages where it has become established. Given its overall dominance of midwest fish assemblages, and its suspected impact on assemblage structure, we asked if structure of the residual fish assemblages (red shiners excluded) was a function of the relative abundance of red shiners throughout the native range of C. lutrensis in the USA. Although red shiner ranked first in abundance in half of the assemblages and numerically dominated 28% of the assemblages, red shiner relative abundance in an assemblage had no detectable effect on richness, diversity, evenness, or complexity of other (residual) species in the assemblage. Relative abundance of red shiners did have a positive effect on the abundance of benthic minnows in the residual assemblage, but not on water column minnows that are ecologically most like red shiners. Environmental factors did not explain a significant amount of the variation in relative abundance of red shiners, but did explain some variation in residual assemblage structure. Although widespread and numerically dominant at many localities, red shiners do not appear to have a strong impact on local fish assemblage structure within their native range. This is in sharp contrast to the reported negative effects of red shiners on fish assemblages where they have been introduced outside their native range.     

马鞍列岛多种生境中鱼类群聚的昼夜变化

为了解岛礁水域鱼类群聚的昼夜变化特征,以便更全面地设计采样方法和掌握采样的时间尺度,于2009年9月对马鞍列岛7种生境进行了共计24网次的刺网昼夜采样,结合排序和聚类方法,从种类组成、相对生物量和丰度、种类丰富度、多样性和相似性等方面对研究海域鱼类群聚特征的昼夜变化作了探讨.在采获的55种鱼类中,昼夜出现的分别为41和46种,数量差别不大,但其昼夜组成却随栖息水层的变化而不同,底层鱼类更趋向于夜间在硬相生境集群活动;近底层鱼类的昼夜集群随生境变化而变化,在同一生境中既有偏向白天也有趋向夜间的;中上层鱼类更多地出现在白天的人工生境(AH).AH白天的丰度渔获率显著大于晚上,而天然生境(NH)昼夜差别不大;生物量渔获率无论NH还是AH皆无显著昼夜差异.具体到种类,仅有小黄鱼Larimichthys polyactis和赤鼻棱鳗Thryssa kammalensis等少数种类的数量在AH有显著的昼夜差别,其他多数种类虽然昼夜的出现率大多有别,但渔获率昼夜差异皆不明显.多样性差异更多的表现在不同生境之间,而同一生境的昼夜差异往往不甚显著.各个生境中鱼类的昼夜种类交替现象非常明显,形成了以褐菖(鲐)Sebastiscus marmoratus和鳗鲇Plotosus anguillaris为代表的夜间优势类群为主的硬相生境群聚格局、以丝背细鳞鲀Stephanolepis cirrhifer和细刺鱼Microcanthus strigatus为代表的白天优势类群为主的硬相生境群聚格局以及缺乏底层优势类群、以石首鱼科鱼类为代表的近底层鱼类为绝对优势类群的软相生境群聚格局.因此,采用被动性渔具在近岸典型生境进行鱼类等相关生物调查时,应使采样时间覆盖昼夜两个时段,且至少保证24h.     

Differential Response of Fish Assemblages to Coral Reef-Based Seaweed Farming

As the global demand for seaweed-derived products drives the expansion of seaweed farming onto shallow coral ecosystems, the effects of farms on fish assemblages remain largely unexplored. Shallow coral reefs provide food and shelter for highly diverse fish assemblages but are increasingly modified by anthropogenic activities. We hypothesized that the introduction of seaweed farms into degraded shallow coral reefs had potential to generate ecological benefits for fish by adding structural complexity and a possible food source. We conducted 210 transects at 14 locations, with sampling stratified across seaweed farms and sites adjacent to and distant from farms. At a seascape scale, locations were classified by their level of exposure to human disturbance. We compared sites where (1) marine protected areas (MPAs) were established, (2) neither MPAs nor blast fishing was present (hence “unprotected”), and (3) blast fishing occurred. We observed 80,186 fish representing 148 species from 38 families. The negative effects of seaweed farms on fish assemblages appeared stronger in the absence of blast fishing and were strongest when MPAs were present, likely reflecting the positive influence of the MPAs on fish within them. Species differentiating fish assemblages with respect to seaweed farming and disturbance were typically small but also included two key target species. The propensity for seaweed farms to increase fish diversity, abundance, and biomass is limited and may reduce MPA benefits. We suggest that careful consideration be given to the placement of seaweed farms relative to MPAs.     

Natural vs. mariculture induced variability in nutrients and plankton in the eastern Mediterranean

The water column in three Mediterranean fish farms was investigated in terms of physical, chemical and biological characteristics. A significant increase in concentrations of phosphate and ammonium was detected within the cages over the control site in one of the farms but without any significant effect on chlorophyll concentration. Analysis of variation within the data set identified location and season as the major factors of variability in most of the variables examined except phosphate and ammonium for which variability induced by fish farming seemed to be of major importance. Plankton abundance for the major taxonomic groups (diatoms, flagellates, dinoflagellates and ciliates), microplankton species diversity and community structure were also determined by the effects of season and location rather than by fish farming.     

Responses of two marine top predators to an offshore wind farm

Quantifying the likely effects of offshore wind farms on wildlife is fundamental before permission for development can be granted by any Determining Authority. The effects on marine top predators from displacement from important habitat are key concerns during offshore wind farm construction and operation. In this respect, we present evidence for no significant displacement from a UK offshore wind farm for two broadly distributed species of conservation concern: common guillemot (Uria aalge) and harbor porpoise (Phocoena phocoena). Data were collected during boat‐based line transect surveys across a 360 km² study area that included the Robin Rigg offshore wind farm. Surveys were conducted over 10 years across the preconstruction, construction, and operational phases of the development. Changes in guillemot and harbor porpoise abundance and distribution in response to offshore wind farm construction and operation were estimated using generalized mixed models to test for evidence of displacement. Both common guillemot and harbor porpoise were present across the Robin Rigg study area throughout all three development phases. There was a significant reduction in relative harbor porpoise abundance both within and surrounding the Robin Rigg offshore wind farm during construction, but no significant difference was detected between the preconstruction and operational phases. Relative common guillemot abundance remained similar within the Robin Rigg offshore wind farm across all development phases. Offshore wind farms have the potential to negatively affect wildlife, but further evidence regarding the magnitude of effect is needed. The empirical data presented here for two marine top predators provide a valuable addition to the evidence base, allowing future decision making to be improved by reducing the uncertainty of displacement effects and increasing the accuracy of impact assessments.     

Differences in proximate lipid composition,heavy metals,and mineral contents in bogue (Boops boops,Linnaueus, 1758) captured far away and directly at sea bass and sea bream cage farms

The objective of this study was to investigate the differences in proximate lipid composition, heavy metals, and mineral contents between bogue (Boops boops, Linnaeus, 1758) captured directly around and near a cage fish farm and those captured far away from it (“wild”). Wild fish were obtained from the fishery of the Aegean Sea and Northeastern Mediterranean. Fish were also caught at a distance of at least 100 meters away from the net cages using a commercial trammel set net. The fish captured near cages were taken at farms cultivating mainly sea bass and sea bream. Samples were taken in March 2016 to determine crude lipid content, moisture, and ash amounts. There were some differences between wild fish and near farm captured fish for both genders. Crude lipid contents of female wild fish and near farm captured fish were found to be higher than those in males (p < .05). The moisture contents of the males near the farms were higher than those in females. Results showed that the predominant macro minerals were potassium in females and males for both capture locations (near and far away from farms: range of 1070–1205 mg/kg). The near farm captured fish had a higher heavy metal content than those captured further away. This may be the result of environmental influences caused by the farm operations.     

溪流大小及其空间位置对鱼类群落结构的影响

2008年10月和2009年10月分别对黄山地区阊江流域与青弋江流域1-3级浅水溪流中鱼类群落结构进行了研究,着重探讨了溪流大小及其空间位置对鱼类群落空间分布的影响。研究共捕获35种鱼类,阊江和青弋江分别为26和29种,其Jaccard相似性系数为57.1%;两流域间每样点的物种数差异显著,个体数差异极显著。在溪流级别梯度(1-3级)下,鱼类的物种数和个体数都呈上升的变动趋势,且物种数的变化相对个体数较显著。综合相关分析、逐步多元回归分析与典范相关分析的结果,阊江和青弋江中鱼类物种数的空间变化主要与下游量级相关,而个体数的空间变化主要与水宽相关。因此,阊江和青弋江1-3级浅水溪流中鱼类群落结构的空间分布格局是溪流大小和空间位置的共同作用结果,且溪流大小和空间位置分别决定鱼类的个体数与物种数的空间分布。       

Spatial and temporal variation in fish assemblages of drying stream pools: The role of abiotic and biotic factors

Droughts and summer drying create unusual temporary aquatic habitats in the form of isolated pools in many small streams around the world. To examine spatial and temporal variation in fish community structure of drying stream pools, their relation to abiotic environmental variables, and associations among species, fish were sampled during summer 1995 and 1996 from pools of four streams in the Ozark mountains, Arkansas, USA. Redundancy analysis of physical-chemical variables showed significant differences among stream sites, but no significant difference between years or stream site by year interaction. Stream sites separated consistently along axes one (habitat heterogeneity) and two (temperature/canopy cover) in both years. Redundancy analysis of fish species-size class densities showed a significant stream site by year interaction. Groupings of stream sites based on fish assemblages were not well explained by physical-chemical variables measured at the pool scale, but were related to location within the drainage basin, and these groupings differed between years. There were 27 (15.8%) and 10 (5.8%) significant associations found among fish species-size classes in 1995 and 1996, respectively, and all but two significant associations in 1995 were positive. Pool depth, habitat heterogeneity, pool size and dissolved oxygen/canopy cover were important local abiotic factors depending on response variables examined. In both years, large fish total density, large central stoneroller density (80 mm TL), and small sunfish (<80 mm TL) density were positively related to pool depth. Otherwise, there was no consistent relationship between physical-chemical variables and dependent variables (fish density and species richness) within a year or between years for a given dependent variable. These results support the hypothesis that local abiotic factors are important in structuring fish assemblages in harsh environments, but the importance of those factors varies temporally, and regional influences appear to override local abiotic conditions as factors structuring fish assemblages in drying stream pools. Predation by terrestrial vertebrates may also be an important factor structuring these fish assemblages that has been largely overlooked.     

Altitudinal gradients in stream fish diversity and the prevalence of diadromy in the Sixaola River basin,Costa Rica

Landscape-scale patterns of freshwater fish diversity and assemblage structure remain poorly documented in many areas of Central America, while aquatic ecosystems throughout the region have been impacted by habitat degradation and hydrologic alterations. Diadromous fishes may be especially vulnerable to these changes, but there is currently very little information available regarding their distribution and abundance in Central American river systems. We sampled small streams at 20 sites in the Sixaola River basin in southeastern Costa Rica to examine altitudinal variation in the diversity and species composition of stream fish assemblages, with a particular focus on diadromous species. A set of environmental variables was also measured in the study sites to evaluate how changes in fish assemblage structure were related to gradients in stream habitat. Overall, fish diversity and abundance declined steeply with increasing elevation, with very limited species turnover. The contribution of diadromous fishes to local species richness and abundance increased significantly with elevation, and diadromous species dominated assemblages at the highest elevation sites. Ordination of the sampling sites based on fish species composition generally arranged sites by elevation, but also showed some clustering based on geographic proximity. The dominant gradient in fish community structure was strongly correlated with an altitudinal habitat gradient identified through ordination of the environmental variables. The variation we observed in stream fish assemblages over relatively small spatial scales has significant conservation implications and highlights the ecological importance of longitudinal connectivity in Central American river systems.     

Fish Assemblages in Three Tidal Saltmarsh and Mangrove Flats in Temperate NSW, Australia: A Comparison Based on Species Diversity and Abundance

Fish assemblages in three geographically distinct saltmarsh meadows and mangrove forests in the Sydney region were examined using fyke nets over three common sampling periods. The saltmarshes at Towra Point and Allens Creek, though of contrasting geomorphic setting, showed similar fish assemblages during spring tides, with relatively high diversity and abundance. The saltmarsh at Bicentennial Park, reclaimed from dredge spoil in the early 1960’s, showed significantly lower diversity and abundance. Fish assemblages in the three mangrove settings were each distinct, though with no significant differences in diversity and abundance between sites. The result raises questions about the efficacy of created saltmarsh as a compensatory habitat for fish.     

Identifying host sources of fecal pollution: diversity of Escherichia coli in confined dairy and swine production systems

Repetitive extragenic palindromic PCR fingerprinting of Escherichia coli is one microbial source tracking approach for identifying the host source origin of fecal pollution in aquatic systems. The construction of robust known-source libraries is expensive and requires an informed sampling strategy. In many types of farming systems, waste is stored for several months before being released into the environment. In this study we analyzed, by means of repetitive extragenic palindromic PCR using the enterobacterial repetitive intergenic consensus primers and comparative analysis using the Bionumerics software, collections of E. coli obtained from a dairy farm and from a swine farm, both of which stored their waste as a slurry in holding tanks. In all fecal samples, obtained from either barns or holding tanks, the diversity of the E. coli populations was underrepresented by collections of 500 isolates. In both the dairy and the swine farms, the diversity of the E. coli community was greater in the manure holding tank than in the barn, when they were sampled on the same date. In both farms, a comparison of stored manure samples collected several months apart suggested that the community composition changed substantially in terms of the detected number, absolute identity, and relative abundance of genotypes. Comparison of E. coli populations obtained from 10 different locations in either holding tank suggested that spatial variability in the E. coli community should be accounted for when sampling. Overall, the diversity in E. coli populations in manure slurry storage facilities is significant and likely is problematic with respect to library construction for microbial source tracking applications.     

Subtle top‐down control of a freshwater meiofaunal assemblage by juvenile fish

1. Top‐down control of prey assemblages by fish predators has been clearly demonstrated in lakes (for zooplankton prey) and rivers (for macroinvertebrate prey). Fish predation can have a significant impact on the body size of prey assemblages; often large‐bodied prey are reduced in abundance, and indirect facilitation of small‐bodied prey occurs potentially initiating a trophic cascade. 2. Benthic communities in aquatic ecosystems also include a numerous and functionally important meiofaunal‐sized component, but in freshwaters the impact of fish predation on meiofaunal assemblages is unknown. We used a laboratory microcosm study to explore the impact of juvenile fish predation on the abundance and size structure of a riverine meiofaunal assemblage. 3. The presence of fish in our microcosms had no significant effect on overall meiofaunal (temporary and permanent) abundance. However, for the Copepoda, we found the first evidence of top‐down control of freshwater meiofaunal assemblages; in microcosms with juvenile fish, the abundance of large‐bodied Copepoda was significantly reduced, whereas small‐bodied Copepoda were significantly more abundant suggesting indirect facilitation. 4. We conclude that predation by juvenile fish can alter the structure of freshwater meiofaunal assemblages, although we do not yet know whether these relatively subtle changes are overwhelmed by large‐scale events such as flow disturbances.     

Fish assemblages associated with urban structures and natural reefs in Sydney,Australia

Abstract Fish ecology in urban estuaries is poorly understood. As coastal landscapes are transformed, recognizing the impact that urban structures, such as marinas, seawalls and wharfs, have on local fish populations is becoming increasingly important. The extent to which fish are able to maintain natural ecological assemblages can be measured, to a certain extent, by how closely they mimic natural habitats. In Sydney Harbour, assemblages of fish associated with artificial structures were compared with those associated with natural rocky reefs. Sampling was carried out in five locations, each with a marina, swimming enclosure and natural reef. In each location, different habitats supported different assemblages, but differences between habitats were not consistent among locations. Subsequent sampling compared artificial and natural sites in three different areas in each of three different estuaries. Results indicated that differences in fish assemblages between artificial and natural sites were greater than differences between sites within each habitat, but there were no patterns among different positions in an estuary or from estuary to estuary. This study provides initial evidence that, although artificial habitats generally support the same species as found on natural reefs, assemblages usually differed between natural and artificial habitats. In addition, without knowing if these habitats do, in fact, sustain viable populations of fish, it would be premature to label artificial structures as effective habitat for fish.