Implications of collection patterns of botanical specimens on their usefulness for conservation planning: an example of two neotropical plant families (Moraceae and Myristicaceae) in Peru

We evaluated the usefulness of herbarium collection databases for assessing patterns of species diversity and distribution based on a dataset from the flowering plant families Moraceae and Myristicaceae from the Peruvian Amazon. For Moraceae, a total of 3523 collections were used representing 134 species. The Myristicaceae were represented by 2113 collections of 46 species. We evaluated the distribution of collections based on 252 grid cells (0.5° size) covering all lowland rainforest in the Peruvian Amazon. We found that collections were concentrated in a few cells and that species diversity clearly increases in relation to collection density. Moraceae were collected in only 45% and Myristicaceae in only 31% of the 252 grid cells. Fifty percent of the collections came from just six and three cells, respectively. Most species were represented by only a small number of collections and collected only in a few grid cells, meaning a few widespread common species tend to dominate the collection records. Not surprisingly, most collections were made close to towns and transport routes. We evaluated the usefulness of rarefaction curves and diversity estimators for comparing diversity between regions. These techniques seem to be of little use for botanical collections due to violations of underlying assumptions. Problems such as accuracy of geographic and taxonomic data and strong bias in the spatial representation of the whole dataset are important to consider when basing conservation analysis, planning, and decision-making on seemingly large databases of biodiversity collections and are discussed in detail.     

Large-scale general collection of wild-plant DNA in Mustang, Nepal

The deposit of DNA samples of wild plants that correspond to voucher specimens is highly informative and greatly enhances the value of the herbarium specimens. The Society of Himalayan Botany (SHB), Tokyo, has assembled general collections of flowering plants of the Sino-Himalayan region for more than 40 years. In a trial of the collection of these types of bioresources for use in basic research, we adopted FTA cards, which have recently been used for large-scale collection of DNA of humans, microorganisms and viruses, for the general collection of DNA samples of wild plants during a botanical expedition in Mustang, Nepal, in 2003. Three hundred and fifty-five plant specimens from Mustang, Nepal, were collected along with the corresponding DNA samples. Examination of the quality of the DNA samples by PCR demonstrated the utility of the collection system. The identification of all of the specimens collected, as well as data from the specimens, will be presented on the Flora of Nepal Database website (), which is open to the public. The DNA resources will be identified on the website and distributed openly by the SHB to researchers worldwide for basic research.     

A single 24 h recall overestimates exclusive breastfeeding practices among infants aged less than six months in rural Ethiopia

Background

Exclusive breastfeeding (EBF) to six months is one of the World Health Organization’s (WHOs) infant and young child feeding (IYCF) core indicators. Single 24 h recall method is currently in use to measure exclusive breastfeeding practice among children of age less than six months. This approach overestimates the prevalence of EBF, especially among small population groups. This justifies the need to look for alternative measurement techniques to have a valid estimate regardless of population characteristics.

Method

The study involved 422 infants of age less than six months, living in Gurage zone, Southern Ethiopia. The study was conducted from January to February 2016. Child feeding practices were measured for seven consecutive days using 24 h recall method. Recall since birth, was used to measure breastfeeding practices from birth to the day of data collection. Data on EBF obtained by using single 24 h recall were compared with seven days repeated 24 h recall method. McNemar’s test was done to assess if a significant difference existed in rates of EBF between measurement methods.

Result

The mean age of infants in months was 3 (SD ?1.43). Exclusive breastfeeding prevalence was highest (76.7%; 95% CI 72.6, 80.8) when EBF was estimated using single 24 h recall. The prevalence of EBF based on seven repeated 24 h recall was 53.2% (95% CI: 48.3, 58.0). The estimated prevalence of EBF since birth based on retrospective data (recall since birth) was 50.2% (95% CI 45.4, 55.1). Compared to the EBF estimates obtained from seven repeated 24 h recall, single 24 h recall overestimated EBF magnitude by 23 percentage points (95% CI 19.2, 27.8). As the number of days of 24 h recall increased, a significant decrease in overestimation of EBF was observed.

Conclusion

A significant overestimation was observed when single 24 h recall was used to estimate prevalence of EBF compared to seven days of 24 h recall. By increasing the observation days we can significantly decrease the degree of overestimation. Recall since birth presented estimates of EBF that is close to seven repeated 24 h recall. This suggests that a week recall could be an alternative indicator to single 24 h recall.

     

Getting the Message Across: Outcomes and Risk Profiles by Awareness Levels of the “Measure-Up” Obesity Prevention Campaign in Australia

Background

Obesity campaign evaluations have used campaign awareness to assess impact, yet have not compared unprompted campaign recallers, with prompted recallers and those with no campaign recall. Using data from an Australian mass-media obesity prevention campaign linking waist circumference and chronic disease we examined whether those with different degrees of campaign recall are distinct groups demographically and for subsequent campaign effects.

Methods

A national cross-sectional telephone survey of randomly selected adults aged 18 to 65 years was conducted post- campaign (n = 2812) covering campaign recall, self-reported diet and physical activity (PA) and waist-measuring knowledge, behaviours and intentions to make lifestyle changes. Respondents were divided into three groups indicating campaign recall: Unprompted Recallers (n=1154); Prompted Recallers (n=1284); and No Recallers (n=374) and compared on demographic, knowledge, and behavioural risk factors for obesity/chronic disease.

Results

Unprompted Recallers were more likely to speak English at home (p<.001), be in the primary campaign target group (25-45 years with children) (p<0.001) than the other two groups and to be university educated and female than the Prompted Recall group only (p=0.001). Unprompted Recallers had better knowledge about recommended waist circumference (p<.001), fruit (p=0.004), vegetable (p<0.001) and PA guidelines (p<0.001) than both the other groups. The No Recall group was less likely than the other two to be overweight/obese (46% vs 55%, p=0.020 and 54%, p=0.037), comparable on meeting fruit consumption and PA guidelines but more likely to meet vegetable intake recommendations (than Unprompted Recallers only).

Conclusions

Unprompted recallers were more knowledgeable about campaign messages; behaviour change and intentions to change were stronger for the two recall groups compared with the No Recall group but not different between them. The current analysis revealed subtle differences in campaign exposure and/or attendance by different demographic subgroups that would not be apparent in a simple aware/unaware dichotomy.     

中国普通小麦初选核心种质的产生

对中国普通小麦种质资源构建了初选核心种质。地方品种和选育品种分别构建。按栽培区(地理生态区)分组。地方品种按亚区分为28组,选育品种按大区分为10组。各组内在21个表型性状聚类的基础上,按平方根法取样,并依遗传多样性指数与遗传丰富度加以调整。提出在生产上或育种中起过重要作用的品种为必选材料。初步选定的材料经种植核对,淘汰错杂后,产生初选核心种质。地方品种全部供试材料11694份,初选核心种质3283份,取样比例为28．18％。选育品种全部11441份,初选核心种质1684份,取样比例为14．9％。计划经分子标记分析,最后核心种质的比例占全部种质的10％左右。根据全部材料21个性状遗传多样性指数测验,初选核心种质,除芒和壳两性状外,与全部种质的遗传差异均未达到显水平。讨论了初选核心种质的构建方法。指出陕南部西山地和汾渭谷地是中国小麦地方品种遗传变异多样性的富集地。育成品种多样性程度以西南冬麦区和黄淮冬麦区为最高。     

Sleep-Related Declarative Memory Consolidation and Verbal Replay during Sleep Talking in Patients with REM Sleep Behavior Disorder

Objective

To determine if sleep talkers with REM sleep behavior disorder (RBD) would utter during REM sleep sentences learned before sleep, and to evaluate their verbal memory consolidation during sleep.

Methods

Eighteen patients with RBD and 10 controls performed two verbal memory tasks (16 words from the Free and Cued Selective Reminding Test and a 220-263 word long modified Story Recall Test) in the evening, followed by nocturnal video-polysomnography and morning recall (night-time consolidation). In 9 patients with RBD, daytime consolidation (morning learning/recall, evening recall) was also evaluated with the modified Story Recall Test in a cross-over order. Two RBD patients with dementia were studied separately. Sleep talking was recorded using video-polysomnography, and the utterances were compared to the studied texts by two external judges.

Results

Sleep-related verbal memory consolidation was maintained in patients with RBD (+24±36% words) as in controls (+9±18%, p=0.3). The two demented patients with RBD also exhibited excellent nighttime consolidation. The post-sleep performance was unrelated to the sleep measures (including continuity, stages, fragmentation and apnea-hypopnea index). Daytime consolidation (-9±19%) was worse than night-time consolidation (+29±45%, p=0.03) in the subgroup of 9 patients with RBD. Eleven patients with RBD spoke during REM sleep and pronounced a median of 20 words, which represented 0.0003% of sleep with spoken language. A single patient uttered a sentence that was judged to be semantically (but not literally) related to the text learned before sleep.

Conclusion

Verbal declarative memory normally consolidates during sleep in patients with RBD. The incorporation of learned material within REM sleep-associated sleep talking in one patient (unbeknownst to himself) at the semantic level suggests a replay at a highly cognitive creative level.     

EEG Correlates of Dream Recall in Depressed Outpatients and Healthy Controls

The present study explored EEG correlates of dream recall in 17 symptomatic, unmedicated depressed patients and in 19 healthy adults. EEG segments from the last 30 minutes of sleep, from the five minutes following morning awakening, and the absolute difference between sleep and waking EEG were contrasted between the two groups of participants during successful dream recall and during no recall. Period amplitude analysis was used to quantify EEG frequencies. Increased high-frequency beta incidence in the right hemisphere and amplitude in both hemispheres during sleep were associated with dream recall in both patient and control groups. Depressed patients also showed higher delta amplitude in both hemispheres during sleep associated with recall, but this effect did not reach significance. With regard to the changes between sleep and wakefiilness, a smaller change in right hemisphere beta and delta incidence characterized successful recall in healthy controls. By contrast, those with depression showed recall success when the sleep/wake shifts in right hemisphere beta and delta incidence were larger. Recall failure was characterized by small EEG shifts from sleep to wakefulness in the depressed group. The same effects were observed for beta and delta amplitude measures, except that healthy controls showed a large shift in delta amplitude in the sleep-wake transition during successful recall but not during recall failure. Recall in those with depression was associated with a dramatic shift in left hemisphere delta amplitude. These findings provide support for Koukkou and Lehmann's (1983, 1993) state-shift hypothesis of dream recall in healthy controls (except for left hemisphere delta amplitude) but not in the depressed. It appears that in order to recall a dream, depressed patients must undergo larger shifts in brain activity and perhaps a different pattern of reorganization of EEG frequencies than controls. This finding may account for the low rates of recall reported previously in this clinical group.     

Museum egg collections as stores of long-term phenological data

Museum collections hold large amounts of data on collecting dates and localities of eggs collected over the past 150 years. Egg collections hold the longest available time series for a wide range of bird species on a large spatial scale. Using data for two British species I investigate whether egg collection data can be used in phenological research. A method is presented allowing laying dates to be estimated from collecting dates. Problems and biases in the data are highlighted. Both the dipper and song thrush have started laying earlier over the past 150 years. The advance in laying is significantly correlated with mean March temperature. Received: 25 October 2000 / Revised: 14 May 2001 / Accepted: 16 May 2001     

Developing core collections to optimize the management and the exploitation of diversity of the coffee Coffea canephora

The management of diversity for conservation and breeding is of great importance for all plant species and is particularly true in perennial species, such as the coffee Coffea canephora. This species exhibits a large genetic and phenotypic diversity with six different diversity groups. Large field collections are available in the Ivory Coast, Uganda and other Asian, American and African countries but are very expensive and time consuming to establish and maintain in large areas. We propose to improve coffee germplasm management through the construction of genetic core collections derived from a set of 565 accessions that are characterized with 13 microsatellite markers. Core collections of 12, 24 and 48 accessions were defined using two methods aimed to maximize the allelic diversity (Maximization strategy) or genetic distance (Maximum-Length Sub-Tree method). A composite core collection of 77 accessions is proposed for both objectives of an optimal management of diversity and breeding. This core collection presents a gene diversity value of 0.8 and exhibits the totality of the major alleles (i.e., 184) that are present in the initial set. The seven proposed core collections constitute a valuable tool for diversity management and a foundation for breeding programs. The use of these collections for collection management in research centers and breeding perspectives for coffee improvement are discussed.     

The Study of Archaeologically Recovered Plant Materials from the Middle Missouri Subarea

Abstract

Archaeologists working in the Middle Missouri have traditionally relied heavily on historic patterns of hunting and gardening in the interpretation of data. This practice is briefly reviewed and related to the traditionally recovered plant remains. Several recent collection of large-seeded Iva and Helianthus are reported. Problems involving the interpretation of the more recent collections are discussed.     

Financing and current capacity for REDD+ readiness and monitoring,measurement, reporting and verification in the Congo Basin

This paper provides the first critical analysis of the financing and current capacity for REDD+ readiness in the Congo Basin, with a particular focus on the REDD+ component of national forest monitoring and measurement, reporting and verification (M&MRV). We focus on three areas of analysis: (i) general financing for REDD+ readiness especially M&MRV; (ii) capacity and information for REDD+ implementation and M&MRV; (iii) prospects and challenges for REDD+ and M&MRV readiness in terms of financing and capacity. For the first area of analysis, a REDD+ and M&MRV readiness financing database was created based on the information from the REDD+ voluntary database and Internet searches. For the second area of analysis, a qualitative approach to data collection was adopted (semi-structured interviews with key stakeholders, surveys and observations). All 10 countries were visited between 2010 and 2012. We find that: (i) a significant amount of REDD+ financing flows into the Congo Basin (±US$550 million or almost half of the REDD+ financing for the African continent); (ii) across countries, there is an important disequilibrium in terms of REDD+ and M&MRV readiness financing, political engagement, comprehension and capacity, which also appears to be a key barrier to countries receiving equal resources; (iii) most financing appears to go to smaller scale (subnational) REDD+ projects; (iv) four distinct country groups in terms of REDD+ readiness and M&MRV status are identified; and (v) the Congo Basin has a distinct opportunity to have a specific REDD+ financing window for large-scale and more targeted national REDD+ programmes through a specific fund for the region.     

Monkeys recall and reproduce simple shapes from memory

If you draw from memory a picture of the front of your childhood home, you will have demonstrated recall. You could also recognize this house upon seeing it. Unlike recognition, recall demonstrates memory for things that are not present. Recall is necessary for planning and imagining, and it can increase the flexibility of navigation, social behavior, and other cognitive skills. Without recall, memory is more limited to recognition of the immediate environment. Amnesic patients are impaired on recall tests [1, 2], and recall performance often declines with aging [3]. Despite its importance, we know relatively little about nonhuman animals' ability to recall information; we lack suitable recall tests for them and depend instead on recognition tests to measure nonhuman memory. Here we report that rhesus monkeys can recall simple shapes from memory and reproduce them on a touchscreen. As in humans [4, 5], monkeys remembered less in recall than recognition tests, and their recall performance deteriorated more slowly. Transfer tests showed that monkeys used a flexible memory mechanism rather than memorizing specific actions for each shape. Observation of recall in Old World monkeys suggests that it has been adaptive for over 30 million years [6] and does not depend on language.     

Identification and quantification of major maillard cross-links in human serum albumin and lens protein. Evidence for glucosepane as the dominant compound

Glycation reactions leading to protein modifications (advanced glycation end products) contribute to various pathologies associated with the general aging process and long term complications of diabetes. However, only few relevant compounds have so far been detected in vivo. We now report on the first unequivocal identification of the lysine-arginine cross-links glucosepane 5, DOGDIC 6, MODIC 7, and GODIC 8 in human material. For their accurate quantification by coupled liquid chromatography-electrospray ionization mass spectrometry, (13)C-labeled reference compounds were synthesized independently. Compounds 5-8 are formed via the alpha-dicarbonyl compounds N(6)-(2,3-dihydroxy-5,6-dioxohexyl)-l-lysinate (1a,b), 3-deoxyglucosone (), methylglyoxal (), and glyoxal (), respectively. The protein-bound dideoxyosone 1a,b seems to be of prime significance for cross-linking because it presumably is not detoxified by mammalian enzymes as readily as 2-4. Hence, the follow-up product glucosepane 5 was found to be the dominant compound. Up to 42.3 pmol of 5/mg of protein was identified in human serum albumin of diabetics; the level of 5 correlates markedly with the glycated hemoglobin HbA(1c). In the water-insoluble fraction of lens proteins from normoglycemics, concentration of 5 ranges between 132.3 and 241.7 pmol/mg. The advanced glycoxidation end product GODIC 8 is elevated significantly in brunescent lenses, indicating enhanced oxidative stress in this material. Compounds 5-8 thus appear predestined as markers for pathophysiological processes.     

Blood sampling and intravenous injections in Japanese quail (Coturnix coturnix japonica).

The suitability of five different sites (brachial, jugular, caudal tibial vein, external dorsal thoracic vein and the heart) were examined for blood sampling and intravenous injections in Japanese quail. In terms of safety, ease of collection, repeated collections or injections, the jugular vein was found to be the most suitable.     

美国在华采集竹类植物标本的历史(1840-2010年)

植物标本采集是植物学研究的重要内容, 与植物引种密切相关。自19世纪以来, 美国植物采集者在全球尤其是中国进行了广泛的植物采集。在众多的植物类群中, 中国的竹类植物引起了美国采集者的极大关注, 并开展了大量调查研究和标本采集工作。研究美国植物采集者在中国采集竹类植物标本的历史, 对了解竹类植物从中国引种到美国的历史具有重要意义。本文基于国内外有关美国在华采集的竹类植物标本数据, 对其学名、采集地、采集人以及采集时间进行整理校对, 分析了美国采集者在华采集竹类植物标本的历史。结果表明: 1840-2010年, 美国在华共采集竹类植物标本960号2,238份, 隶属于25属120种(含变种和变型), 分别占中国竹类属和种数的73.5%和22.5%; 有45位(支)采集者(采集队), 在这些采集者中莫古礼最为重要; 采集地涉及20个省级行政区; 采集时间前后跨度约170年, 主要集中在20世纪上半叶。     

长江春大豆核心种质构建及分析

利用长江春大豆初选核心种质SSR(simple sequence repeat）标记和农艺性状表型等基础数据,对用不同个体取样方法以及不同数据类型建立的核心种质进行评价,目的是确定中国大豆（Glycine max）核心种质的最佳取样策略提供依据,结果表明,根据SSR分子数据聚类,采用类内随机取样,类内以遗传相似性系数取样以及仅依据遗传相似性系数取样都可用于大豆核心种质构建,但是综合不同评价参数发现,以类内随机取样最佳,类内按遗传相似性系数取样次之,单独以遗传相似性系数取样较差。分析不同SSR等位变异保留比例的遗传多样性指数发现,当保留90%和80%的SSR等位变异时,核心种质具有更高的遗传多样性,由于与SSR分子数据种质遗传关系评价的不一致性,农艺性状等基础数据虽然可用来构建核心种质,但其SSR分子水平代表性相对较低,本研究结果还表明,用不同方法或同一方法不同重复次数取样建立的核心种质具有异质性,且这种异质性随核心种质取样比例的降低而增大,因此,虽然可依据不同数据类型确定相应的方法建立核心种质,但综合表型和分子数据建立的核心种质更具有代表性。     

对中国植被分类系统的认知和建议

《中国植被志》的编写工作已经启动, 藉此征求修订《中国植被分类系统》意见之际, 提出几点看法与建议: 1)贯彻原先制定的中国植被“高级分类单位偏重于生态外貌, 而中、低级分类单位则着重种类组成和群落结构”的分类原则。这一思想与当前国际上植被分类的发展是一致的。2)中国植被分类既要符合中国植被的特点, 又要适应全球植被分类的发展, 名词概念应尽量与国际上的广泛理解相一致。3) “群丛”是《中国植被志》描述的基本对象, 其概念需要统一, 以避免歧义和可能导致的南北“群丛”的不等质。资料不足的类型应组织野外补点调查。4)植被分类等级系统是严格的, 但各等级又是开放的, 可适当地增设高级分类单位, 以适应类型扩展之需要。该文附有从植被型纲到植被型的建议草案。     

Two chemical types of the red alga Plocamium cartilagineum from Chile

Examination of two close collections of Plocamium cartilagineum separated into plants bearing carposporophyte, tetrasporophyte and gametophyte yielded the same qualitative chemical composition, but the three reproductive phases have quantitative differences. We designate chemotype β to the collection which contains brominated monoterpenes and chemotype to the group which lacks the enzymatic system which incorporates bromine.     

DNA technology,interstate commerce,and the likely origin of formosan subterranean termite (Isoptera: Rhinotermitidae) infestation in Atlanta,Georgia

This study was the first to use DNA sequencing data to infer the origin of a Formosan subterranean termite, Coptotermes formosanus Shiraki, infestation. Cytochrome oxidase II gene sequence was used to define eight specific maternal lineages from 14 geographic locations across the southeastern United States, Hawaii, and China. One maternal lineage, A, was unique to all the Atlanta collections and one New Orleans collection, which indicated that termites at these sites shared a common maternal ancestor. The impact of interstate commerce in terms of Formosan subterranean termite introductions is addressed as is the industry response needed to arrest the spread of these termites via commercial traffic in used railroad cross ties.     

JOHN BRADBY BLAKE AND JAMES KERR: HYBRID BOTANICAL ART,CANTON AND BENGAL,c. 1770

The collection of botanical paintings commissioned by John Bradby Blake (1745–1773) from a Chinese artist in Canton c. 1770, is one of the star items in the outstanding collection of botanical books and paintings assembled by Rachel Lambert Mellon and now housed in the library of the Oak Spring Garden Foundation. A remarkably similar collection, commissioned from several Indian artists by Dr. James Kerr (1737–1782) in Bengal and Bihar, is now scattered among the collections of the Natural History Museum London, the Royal Botanic Garden Edinburgh and the New York Botanical Garden. Discussion of the Blake and Kerr collections is preceded by some introductory background to the creation of such art – its hybrid nature, its role in the visual documentation of useful plants in European, Asian and colonial contexts, and the botanical and artistic networks in which the two collections were created.