分子生物学方法提高电活性微生物胞外电子传递效率的研究进展*

微生物细胞与电极之间的胞外电子传递效率是限制微生物电化学技术发展的关键因素,而分子生物学的发展为提高胞外电子传递效率带来了光明前景。从四种具有代表性的纯培养电活性微生物(奥奈达希瓦氏菌、铜绿假单胞菌、硫还原地杆菌和工程大肠杆菌)和混合培养电活性微生物出发,综述了利用分子生物学手段改造几种电活性微生物的研究成果,阐明了针对特异的电活性微生物,如何采取相应的分子生物学手段提高其胞外电子传递的效率,并展望了未来的研究方向。     

群感效应对电活性微生物胞外电子传递的影响

群感效应（quorum sensing,QS）是微生物之间以信号分子受体蛋白感知信号浓度变化,从而调控菌群的行为及功能,使其适应环境变化的信号通讯机制。电活性微生物（electroactive microorganisms,EAMs）能进行胞外电子传递,在可再生能源利用和环境修复方面具有广阔的应用前景。近年来,关于QS在EAMs胞外电子传递中的作用的研究日益增多。本文总结了QS对纯EAMs或混合产电菌群的直接或间接电子传递的影响效应及机制,阐述了基于QS的EAMs逻辑与门的构建及其应用前景,并从机制研究的角度展望其未来发展方向。     

吸收胞外电子的电活性微生物

可吸收胞外电子的电活性微生物(Electroactive microorganisms,EAMs)可利用胞外固态载体的电子将二氧化碳或其他氧化态物质还原成胞外有机物、还原态无机物或自身生命活动所需的有机物。该类EAMs的出现拓宽了人们对微生物多样性的认识,在生物质能合成、污染物治理与化学物质检测等方面具有重要的应用价值。本文介绍了代表性的可吸收胞外电子EAMs的物质转化与电能转化率等基本特性,重点阐述该类EAMs基于膜蛋白的直接吸收电子机制,及基于电子穿梭体的间接吸收电子机制,提出了其在微生物电合成系统与微生物传感器中的应用前景,并从EAMs机理研究、生物膜微观机制及工程应用的角度展望其今后的研究方向。     

一株促甲烷氧化假单胞菌Pseudomonas putida P7的分离及电活性特征

微生物胞外呼吸是厌氧环境中控制性能量代谢方式,直接驱动着C、N、S、Fe等关键元素的生物地球化学循环。微生物纳米导线（Microbial nanowires）的发现,被认为是微生物胞外呼吸的里程碑事件,推动了电微生物学（Electromicrobiology）的形成与发展。微生物纳米导线是一类由微生物合成的,具有导电性的纤维状表面附属结构。通过细菌纳米导线,微生物胞内代谢产生的电子可以长距离输送到胞外受体或其他微生物,改变了电子传递链仅仅局限于细胞胞内的认识,从而大大拓展了微生物-胞外环境互作的范围。微生物纳米导线的良好导电性,赋予了其作为天然纳米材料的广阔应用前景。目前,微生物纳米导线的导电机制、生态功能及其在生物材料、生物能源、生物修复及人体健康多领域的应用,已经成为新兴电微生物学的前沿与热点。然而,微生物纳米导线的生物学、生态学功能尚不清楚,它的电子传递机制仍存在分歧。本文在系统性总结微生物纳米导线性质、功能的基础上,以Geobacter sulfurreducens和Shewanella oneidensis纳米导线为模型,详细阐述了纳米导线的组成与结构、表征与测量方法、导电理论（类金属导电学说与电子跃迁学说）及其潜在的应用,最后提出了未来微生物纳米导线研究的重点方向、挑战与机遇。     

基于电活性微生物的芳香烃类污染物转化机制研究进展

芳香烃类化合物(aromatic hydrocarbon compounds)是一类基于苯环结构的有机物,广泛分布在自然环境中,难以自然降解、易被生物积累,且有很大的环境危害性。生物法是有机化合物转化降解的主流工艺,而电活性微生物(electroactive microorganisms, EAM)因其独特的胞外电子传递(extracellular electron transfer, EET)能力和生理代谢模式在芳香烃类化合物污染修复领域具有巨大的应用潜力。电活性微生物可以通过还原脱卤、脱硝与氧化开环过程相结合的方式,最终实现芳香烃类污染物的降解矿化。本文重点综述了电活性微生物降解芳香烃类污染物过程中主要还原/氧化反应机理,归纳了电活性微生物高效还原脱卤、脱硝的关键酶活、代谢途径及转化机理,分析了不同含氧条件下电活性微生物开环方式及降解代谢途径,并通过调控微生物胞外聚合物与添加导电材料等途径来提升电活性微生物的胞外电子传递过程,总结了电极电位、电极材料、电解液性质及温度等环境因子对芳香烃类化合物降解的影响,探讨了芳香烃类污染物的强化生物降解策略的可行性。最后,展望了电活性微生物降解技...     

纳米氧化铈作用下活性污泥胞外聚合物及溶解性微生物产物特性

【目的】纳米氧化铈作为一种应用普遍的人工纳米材料,其生物毒性和环境效应得到了越来越多的重视。尝试从微生物代谢产物的角度,解读纳米氧化铈对活性污泥微生物的影响规律和过程。【方法】在实验室活性污泥系统中投加不同质量浓度纳米氧化铈,研究纳米氧化铈短期作用下微生物胞外聚合物(EPS)和溶解性微生物产物(SMP)这两类主要的微生物代谢产物含量和组分的变化规律。【结果】短期作用下,EPS和SMP的总量都随着纳米氧化铈浓度的增加而增加。低浓度纳米CeO_2不会导致活性污泥中松散型胞外聚合物(LB-EPS)、紧密型胞外聚合物(TB-EPS)含量和组分的显著改变。高浓度纳米CeO_2(25 mg/L以上)作用下TB-EPS含量和组分不受影响,而LB-EPS中多糖和蛋白质为抵抗纳米CeO_2毒性而增多。EPS分层组分含量显著提高,且LB-EPS的增幅显著高于TB-EPS增幅。当纳米氧化铈浓度为50 mg/L时,相较于空白对照组,蛋白质和多糖增幅分别达到35.18%和46.57%。当纳米氧化铈超过25 mg/L以上时,SMP不仅出现蛋白质,多糖和腐殖酸的含量也明显增加。【结论】SMP中蛋白质的产生,可能会与纳米材料相结合,以减小纳米材料的毒性。当纳米氧化铈浓度较低时,EPS的吸附作用会抵制其进入细胞内,当纳米氧化铈浓度较高时,刺激细胞产生更多EPS吸附纳米CeO_2,形成更厚的外部屏障层保护细胞。EPS和SMP的共同作用,构成了微生物细胞对纳米CeO_2的毒性抵抗机制。     

解淀粉芽胞杆菌胞外抑菌活性物质研究现状

解淀粉芽胞杆菌是芽胞杆菌属的一个种,在生长过程中可以向胞外分泌多种抑菌活性物质。按照胞外抑菌活性物质合成方式的不同分为两大类,一类是通过核糖体途径合成的核糖体类细菌素、几丁质酶和β-1,3-葡聚糖酶等抑菌物质;另一类是通过非核糖体途径合成的细菌素、表面活性素、芬荠素、伊枯草菌素等脂肽类物质。这些代谢产物种类丰富、广谱抑菌、抗逆性强,可应用于农业、食品工业和环境保护等。本文对解淀粉芽胞杆菌抑菌活性物质的研究及应用现状进行综述,为深入研究和全面开发解淀粉芽胞杆菌抑菌活性物质提供充足的理论依据。     

微生物胞外多糖——结冷胶的生产与应用前景

本文综述了微生物胞外多糖－结冷胶（gellan gum)的结构与特性、结冷胶的生产、结冷胶合成的生物途径、结冷胶的提取和纯化,并简要概述了结冷胶在食品和医药等行业的应用。     

微生物胞外电子传递效率的合成生物学强化

电活性微生物(产电微生物和亲电微生物)通过与外界环境进行双向电子和能量传递来实现多种微生物电催化过程(包括微生物燃料电池、微生物电解电池、微生物电催化等),从而实现在环境、能源领域的广泛应用,并为开发有效且可持续性生产新能源或大宗精细化学品的工艺提供了新机会。但是,电活性微生物的胞外电子传递效率比较低,这已经成为限制微生物电催化系统在工业应用中的主要瓶颈。以下综述了近年来利用合成生物学改造电活性微生物的相关研究成果,阐明了合成生物学如何用于打破电活性微生物胞外电子传递途径低效率的瓶颈,从而实现电活性微生物与环境的高效电子传递和能量交换,推动电活性微生物电催化系统的实用化进程。     

Enhanced extraction of extracellular polymeric substances from biofilms by alternating current

The extraction of extracellular polymeric substances (EPS) including polysaccharides and proteins from aerobic biofilms using either EDTA or NaOH was enhanced by alternating current especially within the first 0.5 h of current application. At 60 mA and 50 Hz, the average extraction rate of polysaccharides within the first 0.5 h using EDTA was 8.3 mg h^–1 g TS^–1 (TS: total solid, dry wt), 1.6 times of that without current, and that of proteins was 2.5 mg h^–1 g TS^–1, 1.2 times higher. The extraction of polysaccharides was maximal at around 500 Hz while that of proteins was less affected by increasing the current frequency.     

A methodological review on the characterization of microalgal biofilm and its extracellular polymeric substances

Biofilm secreted by microalgae are extracellular polymeric substances (EPSs) composed mainly of polysaccharides, proteins, nucleic acids and lipids. These EPSs immobilize the cells and stabilize biofilm, mediating adhesion towards solid surfaces. The EPSs valorization through industrial exploitations and scientific works is becoming more popular, but the bottleneck of such studies is the lack of consensus among researchers on the selection of detection techniques to be used, especially for novice researchers. It is a daunting task for any inexperienced researcher when they fail to identify the right tools needed for microalgal biofilm studies. In this review, a well-refined analysis protocol about microalgal biofilm and EPSs were prepared including its extraction and characterization. Pros and cons of various detection techniques were addressed and cutting-edge methods to study biofilm EPSs were highlighted. Future perspectives were also presented at the end of this review to bridge research gaps in studying biofilm adhesion via EPSs production. Ultimately, this review aims to assist novice researchers in making the right choices in their research studies on microalgal biofilms in accordance to the available technologies and needs.     

深色有隔内生真菌不同培养时间对胞外聚合物合成的影响

【目的】探索不同培养时间下深色有隔内生真菌(CGMCC17463)合成胞外聚合物(extracellular polymeric substance, EPS)的产量及组成变化。【方法】通过摇瓶培养深色有隔内生真菌(dark septate endophytes, DSE),分析不同培养时间合成的EPS产量及应用的差异。【结果】摇瓶发酵试验表明,第4-12天,DSE生长趋于对数期和稳定期,EPS合成速率较快,在第12天产量达到1.41 g/L,之后EPS的合成速率逐渐降低。EPS组分分析结果表明,在相同质量的EPS中,第12天的胞外多糖含量较高,随着DSE生长进入稳定期至衰亡期,菌丝裂解,EPS中蛋白含量显著提高。官能团分析结果表明,不同培养时间的EPS中官能团种类并未发生变化,仅存在官能团含量上的改变。扫描电子显微镜和粒径分析结果表明,随着培养时间的增加,EPS的结构逐渐发生改变,EPS中分子粒径小于5μm所占比例逐渐提高,分子粒径大于100μm所占比例逐渐降低。另外,EPS的生物活性测定结果表明,不同培养时间合成的EPS均具有清除氧自由基和保水的能力,并且这种能力受EPS组分相对丰...     

Metal binding capabilities of Rhizobium etli and its extracellular polymeric substances

Extracellular polymeric substances (EPS) produced from a strain of Rhizobium etli demonstrated an ability to bind a variety of metals. Cells and capsular EPS rapidly bound Mn²⁺ ions preferentially to Pb²⁺ and Cu²⁺, but also showed an affinity for Pb²⁺. The binding capabilities of soluble EPS were affected by its extraction and processing. The results suggest potential applications in the field of bioremediation.     

藻际环境中胞外聚合物的研究进展

微藻向细胞周围释放营养物质而形成了独特的藻际微环境,吸引了大量细菌的定殖。藻际环境中藻菌关系错综复杂,其间充斥着多样的物质交换与信息交流。以胞外聚合物(extracellularpolymeric substances,EPS)为代表的有机质在其中起着纽带作用。微藻和细菌都可以产生EPS,其过程受多种因素的调节。EPS在藻际环境中具有重要的生态功能,包括参与生物被膜(biofilm)的形成,影响藻菌共生关系的建立以及调节藻际微生物群落组成等。此外,EPS中的一大类别透明胞外聚合物颗粒(transparent exopolymer particles,TEP)还介导了海洋溶解有机碳向颗粒有机碳的转化,参与了海洋碳循环过程。本文以EPS的产生、组成以及对碳转化的影响为重点,综述了其在藻际生态位(Niche)中的生态功能,以期为深入理解藻际环境中的有机质特征和藻菌共生关系提供理论依据。     

Electron microscopic examination of the extracellular polymeric substances in anaerobic granular biofilms

Scanning electron microscopy revealed that collapsed extracellular polymeric substances (EPS) surrounded bacteria present in granular sludge. Treatment of granular sludge with whole-cell antiserum and staining with polycationic ferritin demonstrated that bacteria were enveloped by extensive EPS. Antibody stabilization permitted a visualization of the EPS which more closely resembled its natural hydrated state. The EPS was seen to completely fill the intercellular spaces in the microcolonies. Both pure and mixed microcolonies were observed to be enclosed by EPS. The presence of these large amounts of EPS indicates that this extracellular layer is important in maintaining the structural integrity of granular sludge.     

Potential role of bacterial extracellular polymeric substances as biosorbent material for arsenic bioremediation

Carcinogenic effects of arsenic through consumption of contaminated water are an alarming threat and there is an emergent need to reduce extremely high levels of toxic arsenic from environment. Bacterial biofilms produce polyanionic extracellular polymeric substance (EPS) that is considered an excellent biosorbent material for the remediation of toxic metals and metalloids. This study was aimed to investigate the role of bacterial EPS in arsenic bioremediation. EPS was extracted from biofilm forming and arsenic reducer bacterial strains that were isolated from industrial waste water and characterized biochemically. Fourier transform infrared spectroscopy was also performed to study functional groups. Both Exiguobacterium profundum PT2 and Ochrobactrum ciceri SW1 exhibited enhanced EPS production in the presence of arsenic. Arsenic stress increased protein and carbohydrate contents in the EPS of both bacterial strains as indicated by the peaks of 1363 to 1613 and 1035 to 1218?cm^?1 wavenumbers, respectively to cope with arsenic present in the surroundings. Shifting of peaks in As⁵⁺ treated samples from 1363 to 1379, 847 to 800 and 1211 to 1134?cm^?1 demonstrated the involvement of proteins, carbohydrates and phosphates in the sequestration of arsenic. Scanning electron microscopic examination of EPS revealed structural alterations such as the presence of closely embedded large clumps with interstitial spaces between stacked layers of the EPS of E. profundum PT2 treated with As⁵⁺ displayed the enhanced polysaccharide content and arsenic sorption. Therefore, increased production of bacterial EPS with large number of polyanionic functional groups on its surface having tendency to sequester arsenic through electrostatic or covalent interactions presented EPS an excellent biosorbent material for arsenic bioremediation.