Isolation and pathogenicity of a Bacillus sp. associated with a septicaemic condition in some tropical freshwater fish species

Observations made over a three-year period at the Fish Diseases Laboratory of the African Regional Aquaculture Centre (ARAC), Nigeria, revealed the gradual emergence of a new, highly infectious septicaemic condition in some widely cultivated freshwater fish species. The broad host range included: Heterobanchus bidorsalis, Clarias gariepinus, “Heteroclarias” (a hybrid of these two species, male and female respectively), Chrysichthys nigrodigitatus, and Cyprinus carpio. Clinical signs and pathological lesions associated with the condition were tyical, irrespective of the fish species affected; natural outbreaks apeared to be associated with stress due to environmental factors. The bacterium isolated from moribund and freshly-dead fishes was identified as a Bacillus sp., based on the observed cultural, morphological and biochemical characteristics. Fish reinfection trials confirmed that the isolate was the causative agent of the condition. Antibiotic sensitivity tests showed that the organism was sensitive to tetracycline hydrochloride.     

The food and feeding habits of five freshwater and brackish-water fish species in Nigeria

The food and feeding habits of five economically important fresh-and brackish-water fishes, Channa obscura, Chrysichthys nigrodigitatus, Heterotis niloticus, Synodontis nigrita and Trachinotus maxillosus, were investigated. A number of techniques were used to carry out gut content analysis, including the Hynes 'point' system based on volume estimations expressed as relative percentages. Juveniles of C. nigrodigitatus were omnivorous, consuming 32% gastropods, 30% nematodes, 14% diatoms and 8% crustaceans, while adults were planktotrophic, consuming 23% diatoms, 33% Chlorophyceae and 22% crustaceans. Synodontis nigrita juveniles fed almost exclusively (91%) on nematodes, while adults were predominantly planktotrophic, their diet comprising 50% diatoms and 50% crustaceans. Trachinotus maxillosus was exclusively benthotrophic, consuming 99.5% gastropods and 0.46% nematodes. Heterotis niloticus was planktotrophic at the adult stage and consumed 72% crustaceans, 12% gastropods, 3% fish and about 90% planktotrophic at the juvenile phase. Chrysichthys obscura was purely benthotrophic at the juvenile stage, feeding 100% on nematodes, but fed mainly (89%) on fish at the adult stage.     

Ichthyofaunal survey of rivers within Ewekoro cement manufacturing operational areas

A total of 298 fish specimens belonging to seven families were caught during ichthyoplanktonic survey of three rivers within the Ewekoro cement facility catchment area located in southwestern Nigeria. The highest numbers of specimens were caught from Alaguntan (37.0%) and Elebute (36.6%) rivers while 28.9% of the fish samples were collected from Itori River. The fish population and species diversity recorded in the catchment rivers were significantly lower (p < 0.05) than comparative catches from Ewekoro River located about 30 km downstream of the factory operational area. The food items ingested by the specimens across the seasons in the catchment rivers revealed obvious differences in diet with some degree of overlap in the fish trophic preferences. However, the omnivorous species dominated the catches in each of the rivers, irrespective of season. Categorization of the fish specimens based on habitat-related adaptive physiology showed that a significant number of the fish from Alaguntan and Itori Rivers have accessory respiratory organs. The four species with accessory respiratory organs were Polypterus senegalus Curv., Clarias gariepinus C. & V., Ctenopoma kingslayae Gun. and Channa obscura Smith. Of the 12 fish species recorded in the Ewekoro cement facility catchment rivers, only P. senegalus, C. gariepinus, C. obscura and Oreochromis niloticus (Trew.) are valuable food fishes in southwestern Nigeria.     

Susceptibility of phosphogypsum to fungal growth and the effect of various biocides

Natural gypsum (NG) and phosphogypsum (PG) were tested for resistance to fungal growth based on standard test ASTM D 3273-86, with the recommended mixture of three fungal species, and using the same test modified by the use of a Cladosporium sp. A, isolated from a gypsum plaster ceiling. In the standard test little growth occurred on any of the test specimens. However, abundant fungal growth was produced by the Cladosporium sp. A on phosphogypsum, which was much more susceptible than natural gypsum. Phosphogypsum heated to 600°C to destroy organic residues was resistant to growth of Cladosporium sp. A, as well as other fungi isolated from phosphogypsum panels stored in the environment for 2 years: Cladosporium sp. B, Aspergillus niger and Trichoderma sp. Phosphogypsum moulded in Petri dishes was susceptible to growth of a wide range of fungi, although Fusarium sp. and Rhizopus sp. caused practically no discoloration of the substrate. Six biocides were separately incorporated into the phosphogypsum at concentrations recommended by the suppliers and test specimens incubated on Sabouraud agar inoculated with various fungal isolates. The biocide 2-N-octyl-4-isothiazolin-3-one was the most efficient compound. It prevented the growth of the fungi most likely to cause health problems in buildings, but not that of Helminthosporium sp., isolated from powdered phosphogypsum in the factory. This was the most resistant fungus showing growth on all biocide-containing specimens.     

Diversity of fungal endophytes in some medicinal plants of Himachal Pradesh,India

Fungal endophytes were isolated from surface sterilised leaf segments of five medicinal plants collected from Mandi district, Himachal Pradesh, India. A total of 373 fungal strains belonging to 15 fungal genera and 18 species, Aspergillus niger, A. flavus, A. clavatus, A. variecolor, Penicillium chrsogenum, Alternaria alternata, Curvularia lunata, Haplosporium sp., Phoma sp., Nigrospora sp., Colletotrichum sp., Cladosporium sp., Stemphylium sp., Fusarium sp., Geotrichum sp., Phomopsis sp., Trichoderma sp., Rhizopus sp. and some sterile mycelium were isolated from all the plants. The relative frequency, isolation rate and colonisation rates of endophytes were used to study the endophytic diversity. The results showed that the highest colonisation rate (93.05%) was observed in Adhathoda vasica, while it was 91.66% in Ocimum sanctum, 85% in Viola odorata, 82.81% Cannabis sativa and lowest (61.11%) in Withania somnifera. Moreover, reading the richness and diversity of the endophytic fungi, the highest was obtained for O. sanctum, W. somnifera and C. sativa having eight species each, while lowest (6 and 4) was obtained from A. vasica and V. odorata, respectively. As the role of endophytic organisms in defensive mechanisms of plants is now well established, the present study is an important step to find new and interesting endophytes among the medicinal plants.     

Aeromycoflora in the Central Milk Dairy of Calcutta, India

Intramural aeromycological survey was performed at the Central Milk Dairy, Calcutta, covering eight locations within the Dairyusing Burkard personal volumetric air sampler. The locations were butter cold storage (−2 °C), cold store (8 °C), packaging section (23 °C), milk processing section (24 °C), reconstituent of skimmed milk (24 °C), quality control lab (25 °C), raw milk reception (28 °C) and loading dock (26 °C). A number of fungal spores, conidia and mycelia were recorded in different rooms: the highest spore quantity was recorded in the packaging section (23 °C) and the minimum at the butter cold store (−2 °C). The dominant spores consisted of Aspergillus niger, A flavus,Cladosporium sp., Fusarium sp., Curvularia sp.,Alternaria sp., Torula sp., Myrotheciumsp., Helminthosporium sp., Periconia sp.,Nigrospora sp. and Pithomyces sp. This revised version was published online in June 2006 with corrections to the Cover Date.     

A world-wide survey of the microflora of Dactylis glomerata seed*

The fungal microflora of orchard (cock's-foot) grass seed (Dactylis glomerata L.) was determined for 140 samples obtained from thirteen countries. The microflora was assessed by visual examination of dry seed (20–50 x), by microscopic examination of centrifuged seed washings and by incubating seed on 2 % malt extract agar (MA) under a 10-day regime of diurnal cycling of temperature (23-9^oC/i8-3^oC) and near-ultraviolet radiation (12 h NUV/ 12 h dark). More than twenty-five species of potentially pathogenic fungi and forty species of saprophytes were detected. The pathogens included an Ascochyta sp., Botrytis cinerea, nine species of Drechslera including D. dactylitis (infested 23% of seed lots) and D. Useptatum (10% of seed lots), five species oiFusarium including F. avenaceum (5 % of seed lots), Lep-tosphaeria sp., Phleospora sp., Phoma sp., Phomopsis sp., Pyrenochaeta sp., Rhizoctonia sp., Rhynchophoma sp., Septoria sp. and Stagonospora sp. Many more fungi were identified from seed plated on MA and exposed to NUV than by examination of seed washings or visual examination of dry seed. Several of the fungi that were detected are known to produce mycotoxins.     

Isolation,Identification and Screening of Manganese Solubilizing Fungi From Low-Grade Manganese Ore Deposits

The present investigation reports the isolation, molecular identification and screening of manganese (Mn) solubilizing fungal strains from low-grade Mn mine tailings. Six morphologically distinct Mn solubilizing fungal strains were isolated on MnO₂-supplemented agar plates with Mn concentration of 0.1% (w/v). The biochemical characterization of the isolated fungal strains was carried out. The molecular identification by internal transcribed spacer (ITS) sequencing identified the strains as Aspergillus terreus, Aspergillus oryzae, Penicillium sp., Penicillium sp., Penicillium daleae and Penicillium sp. with GenBank accession numbers KP309809, KP309810, KP309811, KP309812, KP309813 and KP309814, respectively. The ability of the isolated fungal strains to tolerate and solubilize Mn was investigated by subculturing them on Mn-supplemented plates with concentration ranging from 0.1 to 0.5% (w/v). Mn solubilizing ability of the fungal isolates is possibly due to the mycelia production of biogenerated organic acids such as oxalic acid, citric acid, maleic acid and gluconic acid as revealed by ion chromatography. Our investigation signifies the role of fungi in biotransformation of insoluble Mn oxide.     

Evaluation of Extracts Produced by Some Tropical Fungi as Potential Cholinesterase Inhibitors

Summary Extracts of culture filtrates of fungal taxa belonging to Chaetomium sp., Guignardia mangiferae, Pestalotiopsis guepinii, Phomopsis sp., Physalospora sp., Xylaria sp., and sterile mycelium isolated as endophytes from leaves of members of the plant families Anacardiaceae, Apocynaceae, Leguminosae and Palmae; and seven different species of Penicillium isolated from insects were tested for their in vitro acetylcholinesterase (AChE) and butyrylcholinesterase (BuChE) inhibitory activity using Ellman’s colorimetric method adapted for thin layer chromatography. The results showed high rate of cholinesterase inhibitory activity, with the best result being obtained with Penicillium extracts, indicating that they might represent a valuable source for pharmaceutical applications and are worthy of further study.     

Heavy metal concentrations in,and human health risk assessment of,three commercially valuable fish species in the lower Niger River,Nigeria

The concentrations of Fe, Mn, Ni, Pb and V in water, sediment and the gill, liver and muscle tissues of Synodontis resupinatus, Heterotis niloticus and Clarias gariepinus, all commercially important fish species of the lower Niger River, were investigated in 2015. Water, sediment and fish samples were collected for six months and heavy metals were determined using an Atomic Absorption Spectrometer. Fe ranked highest in water and sediment, with concentrations of 2.74 mg l^?1 and 61.60 mg kg^?1, respectively. Metals followed the magnitude of Fe > Mn > Ni > V > Pb in the water and Fe > Mn > V > Ni > Pb in the sediments. Metal concentrations were higher in the tissues of S. resupinatus compared with H. niloticus and C. gariepinus. Fe was also highest in the gills, liver and muscle of the three fish species. Its highest concentration of 132.97 mg kg^?1 dry weight was recorded in the gills of S. resupinatus. Bioconcentration factors of metals ranged from 8.79 for Mn in H. niloticus muscle to 67.99 for Ni in S. resupinatus gills. The fish species studied pose no health risk for all metals studied, because the target hazard quotient was less than 1 and the estimated daily intakes of the metals were below the reference doses.     

Fungi in the indoor environment of flour mill in Lucknow

Forty species of fungi were recovered from the indoor air of flour mills by exposing petri plates containing potato dextrose, czapek-dox, and sabouraud agar media for 5 minutes. A rotorod sampler was used. The fungal flora of the nearby outdoor environment was also studied for comparison. Species of genus Aspergillus dominated in the mills, being represented by 16 species including one ascosporic species. Other species were of genera Cladosporium and Fusarium. Variations in the fungal population in different months of the survey year were also observed.

Identifiable fungal spores recovered using the rotorod sampler were Alternaria (17% occurrence), Curvularia lunata (10.6%), C. letramera (10%), Cladosporium (19%), Drechslera sp. (9%), Epicoccum sp. (5%), Pithomyces sp. (3%), Nigrospora sp. (10.5%), Stemphylium sp. (4.5%) and Torula sp. (4.5%). Mycelial fragments and unidentifiable spores were also seen in abundance.

Varying allergic responses of patients tested intradermally for the antigens of six Aspergilli, viz., Aspergillus flavus, A. fumigatus, A. melleus, A. niger, A. niveus, and A. terreus were also recorded.     

Screening filamentous fungi isolated from estuarine sediments for the ability to oxidize polycyclic aromatic hydrocarbons

Nineteen filamentous fungi, isolated from estuarine sediments in Brazil, were screened for degradation of polycyclic aromatic hydrocarbons (PAH). The fungal isolates were incubated with pyrene. The cultures were extracted and metabolites in the extracts were detected by high performance liquid chromatography (HPLC) and u.v. spectral analyses. Six fungi were selected for further studies using [4,5,9,10-¹⁴C]pyrene. Cyclothyrium sp., Penicillium simplicissimum, Psilocybe sp., and a sterile mycelium demonstrated the ability to transform pyrene. Cyclothyrium sp. was the most efficient fungus, transforming 48% of pyrene to pyrene trans-4,5-dihydrodiol, pyrene-1,6-quinone, pyrene-1,8-quinone and 1-hydroxypyrene. This fungus was also evaluated with a synthetic mixture of PAH. After 192 h of incubation, Cyclothyrium sp. was able to degrade simultaneously 70, 74, 59 and 38% of phenanthrene, pyrene, anthracene and benzo[a]pyrene, respectively.     

Effect of high temperature treatment on disinfestation and quality characteristics of sorghum

Sorghum grain (two varieties) was modified to different water contents (12% to 16% wet weight basis) and heated to 60°C, 70°C and 80°C for periods of 4, 8 and 12 min. Germination, seedling vigour, seedling dry matter, free fatty acid (FFA) content, fungal contamination and infestation with the insect pest Rhyzopertha dominica (F.) were all markedly affected by heat treatment. The effectiveness of the heat treatment was also influenced by the size of the sample used. Heat treatment at 60°C and 70°C resulted in germination being unaffected or stimulated while at 80°C and the higher water contents significantly reduced, when compared to untreated controls. The dry matter of seedlings, and seedling vigour was positively correlated with germination and heat treatment. Heat treatment had no effect on FFA. All stages of the insect pest, R. dominica, were destroyed at 70°C and an 8 min exposure time. However, the water content of the sorghum was critical in determining the efficacy against this pest. The percentage fungal contamination of grain was reduced from 90% to about 25% by heat treatment. However, some grain fungi, particularly Eurotium spp., Aspergillus niger and Penicillium spp. could still be isolated from sorghum grain treated at 80°C for up to 12 minutes.     

Presence of weed fungus in a non‐social beetle–fungus cultivation mutualism

1. Farming by non‐human organisms has arisen independently in several animal lineages, allowing them to survive on food sources that are otherwise difficult to access. However, agricultural gardens are prone to invasion by parasites that overgrow cultivars in the absence of host animals. The presence of garden parasites and associated host adaptations are well studied in advanced fungal agriculture practised by social insects (ants, termites, and ambrosia beetles), but the impact of garden parasites in more primitive forms of agriculture is poorly known. The aim of the present study was to report the presence of weed fungi in fungal gardens of the non‐social lizard beetle Doubledaya bucculenta Lewis (Coleoptera: Erotylidae: Languriinae), which cultivates the yeast Wickerhamomyces anomalus (E.C. Hansen) Kurtzman, Robnett & Bas.‐Powers in the internodes of recently dead bamboo culms. 2. The filamentous fungi Arthrinium spp., Fusarium spp., and an unidentified species were isolated from the inner wall and insect‐made wall debris of bamboo internodes inhabited by the beetle. 3. When cultured together with the yeast in the absence of host larvae, Arthrinium sp.1 outcompeted the yeast, suggesting that this filamentous fungus can invade yeast gardens but is normally suppressed under natural conditions. 4. Rearing experiments showed that beetle larvae grew faster when grown on yeast cultures than when fed only Arthrinium sp.1. 5. These results suggest that Arthrinium sp.1 acts as a weed in the fungal gardens of D. bucculenta, inhibiting both growth of the beetle larvae and proliferation of the beneficial yeast.     

A comparative study on the phylogenetic diversity of culturable actinobacteria isolated from five marine sponge species

A cultivation-based approach was employed to compare the culturable actinobacterial diversity associated with five marine sponge species (Craniella australiensis, Halichondria rugosa, Reniochalina sp., Sponge sp., and Stelletta tenuis). The phylogenetic affiliation of the actinobacterial isolates was assessed by 16S rDNA-RFLP analysis. A total of 181 actinobacterial strains were isolated using five different culture media (denoted as M1–M5). The type of medium exhibited significant effects on the number of actinobacteria recovered, with the highest number of isolates on M3 (63 isolates) and the lowest on M1 (12 isolates). The genera isolated were also different, with the recovery of three genera on M2 and M3, and only a single genus on M1. The number of actinobacteria isolated from the five sponge species was significantly different, with a count of 83, 36, 30, 17, and 15 isolates from S. tenuis, H. rugosa, Sponge sp., Reniochalina sp., and C. australiensis, respectively. M3 was the best isolation medium for recovery of actinobacteria from S. tenuis, H. rugosa, and Sponge sp., while no specific medium preference was observed for the recovery of actinobacteria from Reniochalina sp., and C. australiensis. The RFLP fingerprinting of 16S rDNA genes digested with HhaI revealed six different patterns, in which 16 representative 16S rDNAs were fully sequenced. Phylogenetic analysis indicated that 12 strains belong to the group Streptomyces, three strains belong to Pseudonocardia, and one strain belongs to Nocardia. Two strains C14 (from C. australiensis) and N13 (from Sponge sp.) have only 96.26% and 96.27% similarity to earlier published sequences, and are therefore potential candidates for new species. The highest diversity of three actinobacteria genera was obtained from Sponge sp., though the number of isolates was low. Two genera of actinobacteria, Streptomyces, and Pseudonocardia, were isolated from both S. tenuis and C. australiensis. Only the genus of Streptomyces was isolated from H. rugosa and Reniochalina sp. Sponge species have been demonstrated here to vary as sources of culturable actinobacterial diversity, and the methods for sampling such diversity presented may be useful for improved sampling of such diversity.     

Allergic potential of someAspergilli on saw mill workers in Lucknow,India

Fifty fungal types were isolated from the indoor atmosphere of saw mills by exposing Petri plates containing Czapek-dox Agar, Potato-dextrose Agar and Sabouraud Agar media for 5 min. The fungal flora of the outdoor surroundings was also studied for comparison. Species ofAspergilli dominated in the saw mills, being represented by 16 species including one ascosporic form. Other fungi were species ofCladosporium, Alternaria, Curvularia, Penicillium, Fusarium, etc. Variations in the fungal population in different months were also observed. Fungal spores recovered using the Rotorod Sampler wereAlternaria, Curvalaria lunata, Curvularia tetramera, Cladosporium, Dreschslera sp.,Epicoccum sp.,Pithomyes sp.,Nigrospora, Stemphylium sp. andTorula sp. Mycelial fragments and unidentifiable spores were also seen in abundance. Varying allergic responses of patients were also recorded by testing intradermally, the antigens of nineAspergilli, vizAspergillus flavus, A. fumigatus, A. japonicus, A. melleus, A. nidulans, A. niger, A. niveus, A. tammarii and A. terreus.     

Allergic potential of someAspergilli on saw mill workers in Lucknow,India

Fifty fungal types were isolated from the indoor atmosphere of saw mills by exposing Petri plates containing Czapek-dox Agar, Potato-dextrose Agar and Sabouraud Agar media for 5 min. The fungal flora of the outdoor surroundings was also studied for comparison. Species ofAspergilli dominated in the saw mills, being represented by 16 species including one ascosporic form. Other fungi were species ofCladosporium, Alternaria, Curvularia, Penicillium, Fusarium, etc. Variations in the fungal population in different months were also observed. Fungal spores recovered using the Rotorod Sampler wereAlternaria, Curvalaria lunata, Curvularia tetramera, Cladosporium, Dreschslera sp.,Epicoccum sp.,Pithomyes sp.,Nigrospora, Stemphylium sp. andTorula sp. Mycelial fragments and unidentifiable spores were also seen in abundance. Varying allergic responses of patients were also recorded by testing intradermally, the antigens of nineAspergilli, vizAspergillus flavus, A. fumigatus, A. japonicus, A. melleus, A. nidulans, A. niger, A. niveus, A. tammarii and A. terreus.     

Insect pests of Norway spruce cones: incidences and altitude preferences with emphasis on Cydia strobilella (L.)

Pest species infesting spruce cones were identified from 109 locations approved for the collection of seed material in the Czech Republic. Four (occasionally five) cones were studied from each location, and 448 cones were examined in total. Each cone was assessed for external damage and was then cut open along the spine. The predominant pest species, Cydia strobilella, was detected in 65% of the cones, while the next most common species, Dioryctria abietella, was detected in 13% of the cones. Ernobius abietis, Eupithecia sp., and Thekopsora areolata were less numerous. Kaltenbachiola strobi and Megastigmus sp. were recorded sporadically. Most cones (68%) were infested with only one species. The maximum number of C. strobilella larvae detected in one cone was 13. Cone damage resulting from C. strobilella declined markedly with increasing elevation. Thus, cone infestation by C. strobilella was greater in those forest vegetation zones located in lowlands and uplands rather than in highlands and at lower mountain elevations. The number of cones without damage tended to increase with elevation, but infestation by D. abietella was unrelated to elevation. In some cases, C. strobilella damage to cones was severe. External markings on the cone (resin and deformation) cannot by themselves serve as reliable criteria for predicting C. strobilella infestation, although cones with such signs should be preferentially assessed when seed material is inspected.     

Causative Agents of Superficial Mycoses in Istanbul,Turkey: Retrospective Study

The aim of the present study was to determine the percentage of agents, which can give rise to superficial fungal infections in Istanbul, Turkey. Between 2000 and 2007, the clinical samples collected from 8,200 patients attending the outpatient Dermatology Clinic at Mihrimahsultan Medical Center were examined by direct microscopy and culture. Pathogen fungi were detected in 5,722 of the patients. Of the isolates were 4,218 (74%) dermatophytes, 1,196 (21%) Candida sp., 170 (3%) Malassezia furfur, and 138 (2%) Trichosporon sp. Among the dermatophytes, Trichophyton sp. was the most common isolate followed by Epidermophyton floccosum (243) and Microsporum sp. Among the Candida species, C. albicans (549) was also frequently found. Onychomycosis was the most prevalent type of infection, followed by tinea pedis, tinea cruris, tinea corporis, and tinea capitis. In conclusion, our study showed that the most common isolated agents from superficial infections were T. rubrum being Candida sp. the second most prevalent.     

Occurrence of keratinophilic fungi on Indian birds

Keratinophilic fungi were isolated from feathers of most common Indian birds,viz. domestic chicken (Gallus domesticus), domestic pigeon (Columba livia), house sparrow (Passer domesticus), house crow (Corvus splendens), duck (Anas sp.), rose-ringed parakeet (Psittacula krameri). Out of 87 birds, 58 yielded 4 keratinophilic fungal genera representing 13 fungal species and one sterile mycelium. The isolated fungi were cultured on Sabouraud's dextrose agar at 28±2°C.Chrysosporium species were isolated on most of the birds.Chrysosporium lucknowense andChrysosporium tropicum were the most common fungal species associated with these Indian birds. Maximum occurrence of fungi (47%) was recorded on domestic chickens and the least number of keratinophilic fungi was isolated from the domestic pigeon and duck. The average number of fungi per bird was found to be the 0.44.