组蛋白乙酰化/去乙酰化与基因表达调控

组蛋白是真核生物染色质的主要成分,组蛋白修饰(如甲基化、乙酰化、磷酸化、泛素化等)在真核生物基因表达调控中发挥着重要的作用.在这些修饰中,组蛋白乙酰化/去乙酰化尤为重要.组蛋白乙酰化/去乙酰化可通过改变染色质周围电荷或参与染色质构型重建而影响基因表达;更重要的是组蛋白乙酰化/去乙酰化可形成一种特殊的“密码”,被其它蛋白质识别,影响多种蛋白质因子的活动或与其相互作用,参与到基因表达调控的整个网络中.     

A Mutation in the Arabidopsis TFL1 Gene Affects Inflorescence Meristem Development

We present the initial phenotypic characterization of an Arabidopsis mutation, terminal flower 1-1 (tfl1-1), that identifies a new genetic locus, TFL1. The tfl1-1 mutation causes early flowering and limits the development of the normally indeterminate inflorescence by promoting the formation of a terminal floral meristem. Inflorescence development in mutant plants often terminates with a compound floral structure consisting of the terminal flower and one or two subtending lateral flowers. The distal-most flowers frequently contain chimeric floral organs. Light microscopic examination shows no structural aberrations in the vegetative meristem or in the inflorescence meristem before the formation of floral buttresses. The wild-type appearance of lateral flowers and observations of double mutant combinations of tfl1-1 with the floral morphogenesis mutations apetala 1-1 (ap1-1), ap2-1, and agamous (ag) suggest that the tfl1-1 mutation does not affect normal floral meristems. Secondary flower formation usually associated with the ap1-1 mutation is suppressed in the terminal flower, but not in the lateral flowers, of tfl1-1 ap1-1 double mutants. Our results suggest that tfl1-1 perturbs the establishment and maintenance of the inflorescence meristem. The mutation lies on the top arm of chromosome 5 approximately 2.8 centimorgans from the restriction fragment length polymorphism marker 217.     

DNA甲基化与基因表达调控研究进展

表观遗传修饰是指不改变DNA序列的、可遗传的对碱基和组蛋白的化学修饰,主要包括DNA甲基化、组蛋白修饰、染色质重塑以及非编码RNA等.表观遗传修饰是更高层次的基因表达调控手段.DNA甲基化是一种重要的表观遗传修饰,参与基因表达调控、基因印记、转座子沉默、X染色体失活以及癌症发生等重要生物学过程.近年来随着研究方法和技术的进步,全基因组DNA甲基化的研究广泛兴起,多个物种全基因组甲基化图谱被破译,全局水平对DNA甲基化的研究不仅利于在宏观层面上了解DNA甲基化的特性与规律,同时也为深入分析DNA甲基化的生物学功能与调控奠定了基础.结合最新研究进展综述DNA甲基化在基因组中的分布模式、规律以及和基因转录的关系等.     

The Regulation and Function of Histone Methylation

Histones are wrapped around by genomic DNA to form nucleosomes which are the basic units of chromatin. In eukaryotes histones undergo various covalent modifications such as methylation, phosphorylation, acetylation, ubiquitination and ribosylation. Histone modifications play a fundamental role in the epigenetic regulation of gene expression in multicellular eukaryotes. Histone methylation is one of the most important modifications occurring on Lysine (K) and Arginine (R) residues of histones, dynamically regulated by histone methyltransferases and demethylases. Identifications of such histone modification enzymes and to study how they work are the most fundamental questions needs to be answered. Uncovering the regulation and functions of the various histone methylation enzymes will help us to better understand the epigenetic code. This review summarizes the regulation of histone methyltransferases activity, the recruitment of methyltransferases and the distribution patterns and function of histone methylations.     

花序分生组织特性基因TFL1的系统发育及其功能分析

TFL1同源基因在维持植物营养生长和花序分生组织特性方面起着非常重要的作用,其功能的丧失常导致植物提早开花,花序的正常发育受到抑制,最终茎端形成顶花。至今已经有28种植物的TFL1基因被克隆到,其中包括拟南芥、金鱼草和番茄等模式植物。TFL1 蛋白的系统发育树基本符合物种的亲缘关系。作为花序分生组织特性基因的TFL1与花分生组织特性基因LFY 和AP1相互作用,抑制花序分生组织向花分生组织的转变。TFL1和LFY等基因可用来培育早花新品种,也可用于培育无果的新品种,减少悬铃木、杨、柳等果毛的污染。     

应用寡核苷酸芯片分析水稻花序相关基因在花序发育中的表达谱

从Internet、国内外文献中查询了50个水稻花序的相关基因,制备成水稻花序相关基因的寡核苷酸芯片。对3个不同生长阶段的水稻花序材料进行了表达谱检测,用ScanArray3000对杂交结果进行扫描,得到了不同的基因表达谱。用ImaGene 4.0软件对获得的表达谱进行分析,获得基因表达差异的散点图及饼图。 图像分析表明,候选基因在水稻花序3个不同发育阶段的材料中,表达水平有显著差异。这些结果将有助于研究水稻花序的发育机理。 Abstract:In this paper we chose 50 rice inflorescence genes from Internet,references.Rice oligonucleotide microarray was prepared by printing the target rice inflorescence genes oligonucleotide.Expression patterns of 50 genes from rice inflorescence in three different development phase were obtained by scanning using ScanArray3000 after array hybridization.The scatter plots and scale maps of the images were acquired after the acquired gene expression patterns were analyzed by ImaGene4.0 software.The scatter plots and scale maps show that there existed a significant difference in the expression of these candidate genes in rice inflorescences with different development phase.Further analysis of those candidate gene expression patterns will be helpful to understand the developmental mechanism of rice inflorescence.     

水稻Wx基因表达调控的研究进展

水稻Wx基因编码颗粒结合淀粉合成酶(GBSS),是控制直链淀粉合成的主效基因。文中主要从转录水平和转录后水平介绍水稻Wx基因表达调控的研究进展,同时介绍转基因、遗传背景以及环境温度对Wx基因表达的影响,并提出Wx基因表达调控研究中一些期待解决的问题。     

CpG甲基化与基因调控

CpG双核苷酸中的胞嘧啶甲基化和去甲基化在哺乳动物的基因表达中有重要的调控作用.哺乳动物基因组中有两类启动子:CpG岛启动子和CpG缺乏启动子.两种蛋白质因子通过与甲基化CpG的相互作用影响基因表达,CpG岛在基因组分析中也有广泛的用途.     

外源糖对水稻Ugp1基因表达调控研究

植物尿苷二磷酸葡萄糖焦磷酸化酶（UGPase）是蔗糖合成与降解途径的关键酶。本研究采用水稻叶片离体培养方法,结合Northern杂交技术,研究了外源糖对水稻Ugp1基因表达的影响。研究结果表明,蔗糖、葡萄糖、果糖、光照均能上调水稻Ugp1基因的表达,同时这种上调表达依赖于己糖激酶;果糖能上调水稻成熟叶片中Ugp1基因的表达,但并不影响苗期叶片中Ugp1基因的表达,具组织特异性;葡萄糖和果糖协同作用对Ugp1基因的诱导表达强于蔗糖,这种诱导除依赖于己糖激酶外,还存在其它未知的调控途径。水稻中存在UGPase的多种异构体,蔗糖及光照可诱导水稻Ugp1基因的上调表达,但对水稻UGPase的多种异构体形式并无影响。研究结果将有助于深入了解水稻Ugp1基因与糖信号途径互作调控网络。     

DNA甲基化与基因表达调节

DNA异常甲基化是一种表观遗传改变,常发生在启动子区的CpG岛。某些基因甲基化与基因表达密切相关,在生命过程中扮演着重要功能。一方面,DNA甲基化与高等动物的生长发育密切相关,另一方面,DNA甲基化和其他生命过程也有重要的联系。如X染色体失活、基因组印记、发育调控及细胞分化和肿瘤发生发展中起重要作用。     

Expression of the Arabidopsis thaliana Histone Gene AtHTA1 Enhances Rice Transformation Efficiency

We expressed the Arabidopsis thaliana histone AtHTA1 in rice under the control of the maize ubiquitin promoter. Transformation efficiencies of rice plants that constitutively expressed AtHTA 1 were 28-44% higher than calli containing an empty vector control. Furthermore, co-infection of rice calli with a vector containing AtHTA 1 and another vector with the target gene increased transformation by 27-50%. Thus, expression of AtHTA 1 either transiently or in stably transformed cells improved rice transformation efficiency.     

Regulation of Internodal Extension in Avena Shoots by the Inflorescence, Nodes, Leaves, and Intercalary Meristem

It has been found in recent studies that the inflorescence and nodes (node-pulvini) are the primary sources for native gibberellins in the Avena shoot, and that GA₃ is the predominant gibberellin in the inflorescence. In the present work, linear growth of next-to-last internode is drastically reduced by removal of the inflorescence and last leaf. This growth is completely abolished when the nodes are also excised. It is restored fully by the addition of GA₃ when the nodes are present, and restored only partially when the nodes are deleted. Internodal growth in Avena stem segments with basal node present is also restored by native GA₃-like substances extracted from Avena inflorescences and partially purified by silica gel partition column chromatography. Evidence from these studies, taken in toto, indicates that the inflorescence, nodes, and leaves supply gibberellins, leaves supply substrate, and nodes modulate the gibberellin growth response in next-to-last Avena internodes.     

组蛋白去乙酰化酶11与基因表达

组蛋白去乙酰化酶11（histone deacetylases11,HDAC11）是最新发现的第Ⅳ类HDACs成员,是调节APC细胞IL-10转录的关键因子,对移植免疫耐受的产生起着负性作用。HDAC11还与中枢神经系统的发育有着紧密联系。拟通过对HDAC11在染色质中的作用靶点和作用机制进行综述,以期为移植免疫耐受的诱导和神经系统的功能的调节寻找到适宜的靶点。     

组蛋白精氨酸甲基化修饰对基因转录的调控

总结了组蛋白精氨酸甲基化修饰体系的最新研究进展．组蛋白精氨酸甲基化修饰在基因转录调控中发挥着十分重要的作用,这类修饰由蛋白精氨酸甲基转移酶（PRMTs）介导,其中PRMT1和PRMT4的甲基化修饰与基因的转录激活作用相关,PRMT5和PRMT6的甲基化修饰则与基因的转录抑制作用相关．组蛋白精氨酸的甲基化是一个动态的可逆过程,催化组蛋白精氨酸的去甲基化是由“精氨酸去甲基化酶”介导的．     

Broad Shifts in Gene Expression during Early Postnatal Life Are Associated with Shifts in Histone Methylation Patterns

During early postnatal life, extensive changes in gene expression occur concomitantly in multiple major organs, indicating the existence of a common core developmental genetic program. This program includes hundreds of growth-promoting genes that are downregulated with age in liver, kidney, lung, and heart, and there is evidence that this component of the program drives the widespread decline in cell proliferation that occurs in juvenile life, as organs approach adult sizes. To investigate epigenetic changes that might orchestrate this program, we performed chromatin immunoprecipitation-promoter tiling array to assess temporal changes in histone H3K4 and H3K27 trimethylation (me3) at promoter regions throughout the genome in kidney and lung, comparing 1- to 4-wk-old mice. We found extensive genome-wide shifts in H3K4me3 and H3K27me3 occurring with age in both kidney and lung. The number of genes with concordant changes in the two organs was far greater than expected by chance. Temporal changes in H3K4me3 showed a strong, positive association with changes in gene expression, assessed by microarray, whereas changes in H3K27me3 showed a negative association. Gene ontology analysis indicated that shifts in specific histone methylation marks were associated with specific developmental functions. Of particular interest, genes with decreases in H3K4me3 with age in both organs were strongly implicated in cell cycle and cell proliferation functions. Taken together, the findings suggest that the common core developmental program of gene expression which occurs in multiple organs during juvenile life is associated with a common core developmental program of histone methylation. In particular, declining H3K4me3 is strongly associated with gene downregulation and occurs in the promoter regions of many growth-regulating genes, suggesting that this change in histone methylation may contribute to the component of the genetic program that drives juvenile body growth deceleration.