Microbial Manganese and Sulfate Reduction in Black Sea Shelf Sediments

The microbial ecology of anaerobic carbon oxidation processes was investigated in Black Sea shelf sediments from mid-shelf with well-oxygenated bottom water to the oxic-anoxic chemocline at the shelf-break. At all stations, organic carbon (C_org) oxidation rates were rapidly attenuated with depth in anoxically incubated sediment. Dissimilatory Mn reduction was the most important terminal electron-accepting process in the active surface layer to a depth of ~1 cm, while SO₄²⁻ reduction accounted for the entire C_org oxidation below. Manganese reduction was supported by moderately high Mn oxide concentrations. A contribution from microbial Fe reduction could not be discerned, and the process was not stimulated by addition of ferrihydrite. Manganese reduction resulted in carbonate precipitation, which complicated the quantification of C_org oxidation rates. The relative contribution of Mn reduction to C_org oxidation in the anaerobic incubations was 25 to 73% at the stations with oxic bottom water. In situ, where Mn reduction must compete with oxygen respiration, the contribution of the process will vary in response to fluctuations in bottom water oxygen concentrations. Total bacterial numbers as well as the detection frequency of bacteria with fluorescent in situ hybridization scaled to the mineralization rates. Most-probable-number enumerations yielded up to 10⁵ cells of acetate-oxidizing Mn-reducing bacteria (MnRB) cm⁻³, while counts of Fe reducers were <10² cm⁻³. At two stations, organisms affiliated with Arcobacter were the only types identified from 16S rRNA clone libraries from the highest positive MPN dilutions for MnRB. At the third station, a clone type affiliated with Pelobacter was also observed. Our results delineate a niche for dissimilatory Mn-reducing bacteria in sediments with Mn oxide concentrations greater than ~10 μmol cm⁻³ and indicate that bacteria that are specialized in Mn reduction, rather than known Mn and Fe reducers, are important in this niche.     

Arctic sediments (Svalbard): pore water and solid phase distributions of C,N, P and Si

Pore water and solid phase distributions of C, N, P and Si in sediments of the Arctic Ocean (Svalbard area) have been investigated. Concentrations of organic carbon (C_org) in the solid phase of the sediment varied from 1.3 to 2.8% (mean 1.9%), with highest concentrations found at shallow stations south/southwest of Svalbard. Relatively low concentrations were obtained at the deeper stations north/northeast of Svalbard. Atomic carbon to nitrogen ratios in the surface sediment ranged from below 8 to above 10. For some stations, high C/N ratios together with high concentrations of C_org suggest that sedimentary organic matter is mainly of terrigenous origin and not from overall biological activity in the water column. Organic matter reactivity (defined as the total sediment oxygen consumption rate normalized to the organic carbon content of the surface sediment) correlated with water depth at all investigated stations. However, the stations could be divided into two separate groups with different reactivity characteristics, representing the two most dominant hydrographic regimes: the region west of Svalbard mainly influenced by the West Spitsbergen Current, and the area east of Svalbard where Arctic polar water set the environmental conditions. Decreasing sediment reactivity with water depth was confirmed by the partitioning between organic and inorganic carbon of the surface sediment. The ratio between organic and inorganic carbon at the sediment-water interface decreased exponentially with water depth: from indefinite values at shallow stations in the central Barents Sea, to approximately 1 at deep stations north of Svalbard. At stations east of Svalbard there was an inverse linear correlation between the organic matter reactivity (as defined above) and concentration of dissolved organic carbon (DOC) in the pore water. The more reactive the sediment, the less DOC existed in the pore water and the more total carbonate (C_t or ΣCO₂) was present. This observation suggests that DOC produced in reactive sediments is easily metabolizable to CO₂. Sediment accumulation rates of opaline silica ranged from 0.35 to 5.7 μmol SiO₂ m⁻²d⁻¹ (mean 1.3 μmol SiO₂ m⁻²d⁻¹), i.e. almost 300 times lower than rates previously reported for the Ross Sea, Antarctica. Concentrations of ammonium and nitrate in the pore water at the sediment-water interface were related to organic matter input and water depth. In shallow regions with highly reactive organic matter, a pool of ammonium was present in the pore water, while nitrate conoentrations were low. In areas where less reactive organic matter was deposited at the sediment surface, the deeper zone of nitrification caused a build-up of nitrate in the pore water while ammonium was almost depleted. Nitrate penetrated from 1.8 to ≥ 5.8 cm into the investigated sediments. Significantly higher concentrations of “total” dissolved nitrogen (defined as the sum of NO₃, NO₂, NH₄ and urea) in sediment pore water were found west compared to east of Svalbard. The differences in organic matter reactivity, as well as in pore water distribution patterns of “total” dissolved nitrogen between the two areas, probably reflect hydrographic factors (such as ice coverage and production/import of particulate organic material) related to the dominant water mass (Atlantic or Arctic Polar) in each of the two areas. The data presented were collected during the European “Polarstern” Study (Arctic EPOS) sponsored by the European Science Foundation     

Stabilization of carbon in mineral soils from mangroves of the Sinú river delta,Colombia

Mangrove forests of the Sinú river delta in Cispatá bay, Colombia, show large differences in soil carbon storage between fringe (oceanic) and basin (estuarine) mangroves. We were interested in testing whether these differences in soil carbon are associated with sediment transport processes or whether most of the carbon is produced in situ within the mangrove system. Given past sedimentation dynamics of the Sinú river, we hypothesized that a large portion of soil carbon in basin mangroves is due to sedimentation. We determined total organic carbon content (TOC) as 660.93 ± 259.18 MgC ha^?1 for basin soils up to a sampling depth of 1 m, and as 259 ± 42.61 MgC ha^?1 for fringe soils up to 80 cm depth (maximum soil depth for fringe soils). Using analyses of mineralogy (Al- and Fe-oxides, clay minerals) as well as isotopic analyses of carbon (δ¹³C), the origin of the sediments and their carbon was determined. We found that basin soils in Cispatá bay show similar mineralogical composition than those of fluvial sediments, but the carbon concentration of river sediments was close to zero. Given the large capacity of the Fe and Al oxides in clay minerals to store dissolved carbon, and that the isotopic composition of the carbon is mostly of plant origin, we concluded contrary to our initial hypothesis that the carbon stored in basin mangrove soils are produced in situ. The deposited fluvial sediments do play an important role for carbon storage, but mostly in providing binding surfaces for the stabilization of organic carbon.     

Sulfate reduction and sediment metabolism in Tomales Bay,California

Sulfate reduction rates (SRR) in subtidal sediments of Tomales Bay, California, were variable by sediment type, season and depth. Higher rates were measured in near-surface muds during summer (up to 45 nmol cm^-3 h^-1), with lower rates in sandy sediments, in winter and deeper in the sediment. Calculations of annual, average SRR throughout the upper 20 cm of muddy subtidal sediments (about 30 mmol S m^-2 d^-1) were much larger than previously reported net estimates of SRR derived from both benthic alkalinity flux measurements and bay wide, budget stoichiometry (3.5 and 2.6 mmol m^-2 d^-1, respectively), indicating that most reduced sulfur in these upper, well-mixed sediments is re-oxidized. A portion of the net alkalinity flux across the sediment surface may be derived from sulfate reduction in deeper sediments, estimated from sulfate depletion profiles at 1.5 mmol m^-2 d^-1. A small net flux of CO₂ measured in benthic chambers despite a large SRR suggests that sediment sinks for CO₂ must also exist (e.g., benthic microalgae).     

Comparison of bacterial production in sediments, epiphyton and the pelagic zone of a lowland river

1. The microbial metabolism of organic matter in rivers has received little study compared with that of small streams. Therefore, we investigated the rate and location of bacterial production in a sixth‐order lowland river (Spree, Germany). To estimate the contribution of various habitats (sediments, epiphyton, and the pelagic zone) to total bacterial production, we quantified the contribution of these habitats to areal production by bacteria. 2. Large areas of the river bottom were characterized by loose and shifting sands of relatively homogenous particle size distribution. Aquatic macrophytes grew on 40% of the river bottom. Leaf areas of 2.8 m² m^?2 river bottom were found in a 6.6 km river stretch. 3. The epiphyton supported a bacterial production of 5–58 ng C cm^?2 h^?1. Bacterial production in the pelagic zone was 0.9–3.9 μg C L^?1 h^?1, and abundance was 4.0–7.8 × 10⁹ cells L^?1. Bacterial production in the uppermost 2 cm of sediments ranged from 1 to 8 μg C cm^?3 h^?1, and abundance from 0.84 to 6.7 × 10⁹ cells cm^?3. Bacteria were larger and more active in sediments than in the pelagic zone. 4. In spite of relatively low macrophyte abundance, areal production by bacteria in the pelagic zone was only slightly higher than in the epiphyton. Bacterial biomass in the uppermost 2 cm of sediments exceeded pelagic biomass by factors of 6–22, and sedimentary bacterial production was 17–35 times higher than in the overlying water column. 5. On a square meter basis, total bacterial production in the Spree was clearly higher than primary productivity. Thus, the lowland river Spree is a heterotrophic system with benthic processes dominating. Therefore, sedimentary and epiphytic bacterial productivity form important components of ecosystem carbon metabolism in rivers and shallow lakes. 6. The sediments are focal sites of microbial degradation of organic carbon in a sand‐bottomed lowland river. The presence of a lowland river section within a river continuum probably greatly changes the geochemical fluxes within the river network. This implies that current concepts of longitudinal biogeochemical relationships within river systems have to be revised.     

Effect of different doses of organic fertilizer (cow dung) on pond productivity and fish biomass in stillwater ponds

The effects of five (5 000, 10 000, 15 000, 20 000, 24 000 kg ha^?1 year^?1) different doses of organic fertilizer (cow dung) were studied on pond productivity in terms of plankton production and fish biomass in freshwater fish ponds. The grow out period was 60 days. Physico-chemical factors of pond waters were also monitored. With an increase in the fertilizer dose, biochemical oxygen demand (BOD) (1.7 ± 0.1 – 10.35 ± 0.05 mg L^?1), O-PO₄ (0.04 ± 0.0 – 0.77 ± 0.02 mg L^?1) and NH₄-N (0.03 ± 0.02 – 0.32 ± 0.02 mg L^?1) increased significantly (P < 0.05). Alkalinity (79.0 ± 1.6 – 164.0 ± 3.8 mg L^?1) also increased with the increase in fertilizer dose, declining after 60 and 75 days (48.8 ± 1.13 – 67.9 ± 2.1 mg L^?1). NO₃-N was maximum (1.66 ± 0.2 mg L^?1) in the ponds which received cow dung at 15 000 kg ha^?1 year^?1, and declined (0.94 ± 0.5 mg L^?1) at higher doses. Dissolved oxygen (DO) remained significantly high (4.7 mg L^?1) up to the third (15 000 kg ha^?1 year^?1) treatment. Highest plankton population (phytoplankton 17 350.0 ± 1 250.0 no L^?1), zooplankton (373.0 ± 22.0 no L^?1), species diversity (phytoplankton 3.0, zooplankton 2.3), fish biomass (4.45 kg) and specific growth rate (SGR) (2.36 % body weight (BW) d^?1) were also observed in ponds which were treated with fertilizer at 15 000 kg ha^?1 year^?1. However, at higher doses, a decline in these parameters (phytoplankton, 0.0 – 8 810.0 ± 690.0 no L^?1; zooplankton, 0.0 – 205.0 ± 25.0 no L^?1; fish biomass, 2.3 kg; SGR, 1.25 % body weight (BW) d^?1) was observed. Furthermore, with a decrease in the water temperature from 24 °C (on day 60) to 21 °C (on day 75), a decline in nutrient release, plankton population L^?1 and species diversity was observed. Sediment analysis indicated that with an increase in the fertilizer dosage, a significant and progressive increase in the accumulation of organic carbon (0.787 ± 0.006 – 0.935 ± 0.01), total nitrogen (0.877 ± 0.071 – 1.231 ± 0.03), NH₄-N (54.4 ± 0.57 – 68.95 ± 0.81), NO₃-N (78.5 ± 1.21 – 98.5 ± 0.35), total P (140.0 ± 0.50 – 151.0 ± 1.27) and soluble P (7.15 ± 0.18 – 10.1 ± 0.56) took place; similarly, electrical conductivity (EC) values of sediment also increased progressively (from 200.0 ± 7.1–300.0 ± 10.63 μ mhos cm^?1).     

Depositional fluxes and sources of particulate carbon and nitrogen in natural lakes and a young boreal reservoir in Northern Québec

We investigated the depositional trends of total particles, carbon and nitrogen in a newly created, 600-km² hydroelectric reservoir in Northern Québec, and compared the results with those observed in lakes of the surrounding region. We show that particulate fluxes exhibit a large degree of spatial heterogeneity in both the reservoir (68–548 mg POC m^?2 d^?1 and 5–33 mg PN m^?2 d^?1) and the natural lakes (30–150 mg POC m^?2 d^?1 and 3–12 mg PN m^?2 d^?1) and that on average, settling fluxes of the reservoir (211 ± 46 mg POC m^?2 d^?1 and 14 ± 3 mg PN m^?2 d^?1) exceeded lake deposition (79 ± 13 mg POC m^?2 d^?1 and 7 ± 1 mg PN m^?2 d^?1) by approximately two-fold. Our results also show that the nature of the organic matter reaching the sediments was significantly different between lakes and the reservoir, which can have consequences for benthic metabolism and the long-term storage. We found that sinking fluxes in the reservoir were mostly regulated by local morphological and hydrological conditions, with higher fluxes along or in the vicinity of the old riverbed (average 400 ± 73 mg POC m^?2 d^?1 and 24 ± 5 mg PN m^?2 d^?1) and lower fluxes in calmer zones such as side bays (average 106 ± 10 mg POC m^?2 d^?1 and 8 ± 1 mg PN m^?2 d^?1). In lakes, where settling fluxes were not linked to the trophy, or dissolved organic carbon, the actual nature of the sedimenting organic material was influenced by lake morphometry and the relative contribution of algal versus terrestrial sources. We conclude that re-suspension and erosion play a major role in shaping the reservoir sinking fluxes which explain both, the higher reservoir deposition and also some of the qualitative differences between the two systems. Despite all these differences, sinking particulate organic carbon fluxes were small and surprisingly similar relative to the surface carbon dioxide emissions in both the reservoir and lakes, representing approximately 16–17 % of the carbon efflux estimated for these same systems in 2008.     

Organic enrichment of sediments reduces arbuscular mycorrhizal fungi in oligotrophic lake plants

1. Arbuscular mycorrhizal fungi (AMF) commonly colonise isoetid species inhabiting oxygenated sediments in oligotrophic lakes but are usually absent in other submerged plants. We hypothesised that organic enrichment of oligotrophic lake sediments reduces AMF colonisation and hyphal growth because of sediment O₂ depletion and low carbon supply from stressed host plants. 2. We added organic matter to sediments inhabited by isoetids and measured pore‐water chemistry (dissolved O₂, inorganic carbon, Fe²⁺ and ), colonisation intensity of roots and hyphal density after 135 days of exposure. 3. Addition of organic matter reduced AMF colonisation of roots of both Lobelia dortmanna and Littorella uniflora, and high additions stressed the plants. Even small additions of organic matter almost stopped AMF colonisation of initially un‐colonised L. uniflora, though without reducing plant growth. Mean hyphal density in sediments was high (6 and 15 m cm^?3) and comparable with that in terrestrial soils (2–40 m cm^?3). Hyphal density was low in the upper 1 cm of isoetid sediments, high in the main root zone between 1 and 8 cm and positively related to root density. Hyphal surface area exceeded root surface area by 1.7–3.2 times. 4. We conclude that AMF efficiently colonise isoetids in oligotrophic sediments and form extensive hyphal networks. Small additions of organic matter to sediments induce sediment anoxia and reduce AMF colonisation of roots but cause no apparent plant stress. High organic addition induces night‐time anoxia in both the sediment and the plant tissue. Tissue anoxia reduces root growth and AMF colonisation, probably because of restricted translocation of nutrient ions and organic solutes between roots and leaves. Isoetids should rely on AMF for P uptake on nutrient‐poor mineral sediments but are capable of growing without AMF on organic sediments.     

Biofilm development and extracellular enzyme activities on wood in billabongs of south-eastern Australia

• 1 The accrual of organic matter, chlorophyll a and bacteria, and the activities of various extracellular enzymes were studied during biofilm formation on River Red Gum (Eucalyptus camaldulensis) wood submerged in two temperate Australian billabongs for 24 weeks over summer and winter of 1989–90.
• 2 Peak organic matter content of the biofilm ranged from 0.7 to 3.3mg AFDW cm^?2, chlorophyll a content from 1.3 to 4. 2μg cm^?2 and bacterial abundance from 18 × 10⁶ to 94 × 10⁶ cells cm^?2. Most variation in organic matter content, chlorophyll a content and bacterial abundance in the biofilms couid be attributed to the duration of immersion (28–48% of variation) and to the interaction between site and submergence period (11–12%). Differences between sites and between seasons were less important in explaining total variation.
• 3 Alkaline phosphatase, aminopeptidase and [3-D-glucosidase activities, determined per unit substratum surface area, were up to 138 ± 26 nmol cm^?2h^?1, 113 ± 1 nmol cm^?2h^?1 and 9.3 ± 2.2 nmol cm^?2h^?1, respectively. Activities of these three enzymes determined per unit organic biomass were up to 203 ± 25, 157 ± 13, and 16 ± 2.1 nmol mg¹ AFDW h^?1 respectively. Enzyme activities expressed on an area- or biomass-specific basis responded differently to the effects of season, site and duration of substratum exposure.
• 4 Few consistent relationships could be established between the activity of a given enzyme system and the activity of other enzymes, nor with the various biomass parameters, such as total organic matter content, chlorophyll a content or bacterial abundance.
• 5 We suggest that submerged wood of the River Red Gum is an important site for biofilm development in lentic systems in south-eastern Australia, and thus as a food resource for grazing invertebrates and for transformations of various nutrients and organic matter.

     

Drainage-induced forest growth alters belowground carbon biogeochemistry in the Mer Bleue bog, Canada

Impacts of long-term drying and associated vegetation change on anaerobic decomposition, methane production, and pore water composition in peat bogs are poorly documented. To identify some of these impacts, we analyzed peat humification, pore water solutes, in situ and in vitro respiration rates, and Gibbs free energies of methanogenesis in a bog near a drainage ditch established in 1923. We compared drained peat under open bog vegetation and forest with a bog reference site. Drainage and tree growth induced an enrichment in carboxylic, aromatic, and phenolic moieties in the peat. Short-term in vitro respiration rates significantly decreased with humification (R ²?>?0.6, p?<?0.01). Dissolved inorganic carbon (DIC) and CH₄ concentrations also attained lower maxima in drained areas. However, near the water table in situ respiration intensified as indicated by steeper increases in DIC and CH₄ concentrations than at the reference site, especially under forest. Maximum in situ CO₂ production derived from inverse pore water modeling was 10.3?nmol?cm^?3?d^?1 (forest) and 6.3?nmol?cm^-3?d^-1 (bog) and was one to two orders of magnitude slower than in vitro anaerobic respiration. In the highly decomposed shallow peats under forest, methane production was suppressed and DOC concentration elevated. Raised H₂ concentrations (up to 200?nmol?l^?1) and in situ Gibbs free energies of down to ?60?kJ?mol^?1?(CH₄) suggested an inhibition of hydrogenotrophic methanogenesis by an unidentified factor at these sites. The study documents that several changes in biogeochemical process patterns do occur post-drainage, especially when tree growth is triggered. Most importantly, the establishment of forest on intensely humified peats can lower in situ methane production.     

Coidingham Loch, S.E. Scotland

SUMMARY. 1. Coidingham Loch (Berwickshire. Scotland) (area. 8.4 ha, mean depth 2.9 m, max. depth 12.3 m) belongs to Hakansson's convex shape category. It lies in a basin of Silurian Greywackes rock within 0.25 km of coastal sea cliffs (c. 133 m a.s.l.). The theoretical hydraulic replacement time is 3.17 years. 2. The loch stratifies intermittently in summer. Fluctuations in oxygen concentration generally correspond to spells of mixing and stratification; low values of 10% saturation occur at the bottom. 3. The sum of the concentrations of major cations (Na+, K+, Ca²⁺, Mg²⁺) is in accordance with measured conductivities ranging between 380 μS cm^?1 and 420 μS cm^?1 (k.₂₅). The ratios (by equivalents) of Na⁺/Cl^? (0.04) are similar to those in sea-water, whilst values for Ca+²⁺/Cl^? (0.85–1.01) and Mg²⁺/Cl^? (0.79–0.88) reflect the bedrock. 4. Nitrate concentrations were lowest (<0.05 mg N1^?1) in summer following losses from the column of 107 mg N m^?2 1^?1, a rate corresponding well with published figures on microbial nitrate reduction. Nitrate increased at a rate of 8μg N I^?1 d^?1 to a winter maximum of 1.55 mg N I^?1. Mass balance calculations show that if this rise is attributed to run-off from surrounding land, a loss rate of 11.1 kg N ha^?1 yr^?1 would be required; this value is also commensurate with published figures. 5. Changes in phosphorus and factors controlling them contrast markedly with those of nitrate. The minimum concentration of 55 μg total P l^?1 (mainly in soluble reactive form) occurs in spring. An increase to the maximum ofc. 300 μg l^?1 in summer is sustained mainly by release from the sediments at a regular rate of 3 μg P l^?1 d^?1 (8.7 mg m^?2 d^?1). Adsorption by the sediments is considered to be the major process accounting for autumnal losses of phosphorus of 2.6 mg P M^?2d^?1. 6. Silica showed a less regular seasonal pattern, but varied some 45-fold with a maximum of 2.25 mg SiO₂, l_?1 in August.     

Evaluation of ammonium and phosphate release from intertidal and subtidal sediments of a shallow coastal lagoon (Ria Formosa – Portugal): a modelling approach

During an annual cycle, overlying water and sediment cores were collected simultaneously at three sites (Tavira, Culatra and Ramalhete) of Ria Formosa’s intertidal muddy and subtidal sandy sediments to determine ammonium, nitrates plus nitrites and phosphate. Organic carbon, nitrogen and phosphorus were also determined in superficial sediments. Ammonium and phosphate dissolved in porewater were positively correlated with temperature (P < 0.01) in muddy and sandy sediments, while the nitrogen-oxidized forms had a negative correlation (P < 0.02) in muddy sediments probably because mineralization and nitrification/denitrification processes vary seasonally. Porewater ammonium profiles evidenced a peak in the top-most muddy sediment (380 μM) suggesting higher mineralization rate when oxygen is more available, while maximum phosphate concentration (113 μM) occurred in the sub-oxic layer probably due to phosphorus desorption under reduced conditions. In organically poor subtidal sandy sediments, nutrient porewater concentrations were always lower than in intertidal muddy sediments, ranging annually from 20 μM to 100 μM for ammonium and from 0.05 μM to 16 μM for phosphate. Nutrient diffusive fluxes predicted by a mathematical model were higher during summer, in both muddy (104 nmol cm⁻² d⁻¹––NH₄⁺; 8 nmol cm⁻² d⁻¹––HPO₄⁻²) and sandy sediments (26 nmol cm⁻² d⁻¹––NH₄⁺; 1 nmol cm⁻² d⁻¹––HPO₄⁻²), while during lower temperature periods these fluxes were 3–4 times lower. Based on simulated nutrient effluxes, the estimated annual amount of ammonium and phosphate exported from intertidal areas was three times higher than that released from subtidal areas (22 ton year⁻¹––NH₄⁺; 2 ton year⁻¹––HPO₄⁻²), emphasizing the importance of tidal flats to maintain the high productivity of the lagoon. Global warming scenarios simulated with the model, revealed that an increase in lagoon water temperature only produces significant variations (P < 0.05) for NH₄⁺ in porewater and consequent diffusive fluxes, what will probably affect the system productivity due to a N/P ratio unbalance.     

Small scale variability of vertical water and dissolved organic matter fluxes in sandy Cambisol subsoils as revealed by segmented suction plates

Dissolved organic matter (DOM) is considered as a major carbon source in subsoils. As soil water fluxes are highly variable at small scale, and transport versus sorptive retention of DOM is related to water flux and associated contact time with minerals, knowledge of the small scale spatial variability of the dissolved organic carbon (DOC) concentrations and fluxes into the subsoil is decisive for a solid estimation of organic carbon (OC) translocation into the subsoil. Here, we made advantage of novel segmented suction plates (4 × 4 segments, each 36 cm²) to analyze the small scale spatial and temporal variability of DOC transport at 10, 50 and 150 cm depth of three subsoil observatories (approximately 50 m apart) in a sandy Dystric Cambisol under beech in the Grinderwald, 40 km northwest from Hannover, Germany. Water fluxes, DOC concentrations and fluxes as well as the specific UV absorbance (SUVA) at 280 nm were determined in weekly samples from August 2014 to November 2015 for each individual segment. The DOC fluxes decreased with depth (19.6 g C m^?2 year^?1, 10 cm; 1.2 g C m^?2 year^?1, 150 cm) and were strongly related to the water fluxes. The SUVA at 280 nm also decreased with depth (0.03 L mg C^?1 cm^?1, 10 cm; 0.01 L mg C^?1 cm^?1, 150 cm), indicating a selective retention of aromatic moieties, that was eased with increasing water flux at least in the subsoil. The proportion of temporal fluctuations and small scale variability on the total variance of each parameter where determined by the calculation of intra class correlations. The seasonal heterogeneity and the small scale spatial heterogeneity were identified to be of major importance. The importance of the small scale spatial heterogeneity strongly increased with depth, pointing towards the stability of flow paths and suggesting that at a given substrate hydrological processes rather than physicochemical processes are decisive for the sorptive retention of DOM and the variability of OC accumulation in the subsoil. Our results clearly show the demand of small scale sampling for the identification of processes regarding carbon cycling in the subsoil.     

Plankton dynamics in the marginal ice zone of the central Barents Sea during spring: carbon flow and structure of the grazer food chain

Plankton community structure was analysed during spring at four stations along a transect from the polar ice into open waters of the Barents Sea. The transect mimicks a time span of months in the biological succession during the Arctic summer. The significance of the microbial food web vs the more classical food web was evaluated using carbon budget models. The standing stocks of diatom-dominated phytoplankton and bacteria were generally high especially in connection to ice. The biomass of microzooplankton, dominated by heterotrophic dinoflagellates was significantly high, with specific growth rates following the in situ temperature. The mean ± SE specific growth rate was 0.40±0.12 d^?1 for ciliates and 0.24 ± 0.05 d^?1 for heterotrophic dinoflagellates, indicating no food limitation. The estimated total carbon requirement for microzooplankton was, at the ice-covered station, approximately 100% of the daily primary production, decreasing to 25% in the open water. Carbon-specific secondary production of the copepodsCalanus finmarchicus (Gunnerus),C. glacialis (Jaschnov),C. hyperboreus (Krøyer) andMetridia longa (Lubbock) were analysed by egg production.C. finmarchicus andM. longa were productive at all stations, including the ice-covered locations, with a maximum at 0.08 d^?1 and 0.035 d^?1, respectively. The other, more Arctic-related,Calanus spp. were virtually outspawned. The standing stock of copepods was only 10–20% of the total microbial grazer biomass. The community growth and grazing by copepods showed significantly less quantitative importance for the pelagic carbon flow than the microbial processes.     

Aerobiological study in the Mexico City subway system

Monitoring campaigns in two different seasons were carried out at two underground stations (Tacubaya and Azcapotzalco) of the subway of Mexico City, in order to assess airborne bacterial and fungi concentrations, as well as their relationship with several factors, such as depth of the station, sampling site, temperature, and relative humidity. Sixteen sampling sites were selected according to the depth of the lines and the transit of passengers in the corridors, concourses, and platforms. In addition, samples were also collected in the carriages when they were in movement. Outdoor samples were taken at the two stations for comparison. Two-stage multi-orifice cascade impactors were used to collect aerobiological particles, and with the aid of macroscopic and microscopic characterization were found 57 fungi and 61 bacteria colonies. Outdoor bacteria concentrations ranged from 1 to 68 CFU m^?3, while fungi concentrations varied from 6 to 80 CFU m^?3. The indoor concentration levels of bacteria and fungi ranged from 1 to 484 CFU m^?3 and from 51 to 715 CFU m^?3, respectively. Fungi and bacteria indoor concentrations in the subway were higher than outdoor, up to 8 times. Most of bacteria were identified as Gram-positive nonsporulating short bacillus, while the most abundant fungi genera identified were Aspergillus, Penicillium, and Alternaria in that order of frequency. Statistical analysis showed significant differences between the stations and the lines of different depths, showing a greater microorganisms’ concentration with a greater depth. Although bacteria and fungi concentrations were higher in the spring than in winter, this difference was not significant. Even if indoor microbiological pollution in underground stations was higher than outdoor, the concentrations found in this study were lower than indoor air international standards.     

Microbial processes of the carbon and sulfur cycles in the Chukchi Sea

The research performed in August 2004 within the framework of the Russian-American Long-term Census of the Arctic (RUSALCA) resulted in the first data concerning the rates of the key microbial processes in the water column and bottom sediments of the Bering strait and the Chukchi Sea. The total bacterial counts in the water column varied from 30 × 10³ cells ml^?1 in the northern and eastern parts to 245 × 10³ cells ml^?1 in the southern part. The methane content in the water column of the Chukchi sea varied from 8 nmol CH₄l^?1 in the eastern part of the sea to 31 nmol CH₄l^?1 in the northern part of the Herald Canyon. Microbial activity occurred in the upper 0–3 cm of the bottom sediments; the methane formation rate varied from 0.25 to 16 nmol CH₄dm^?3 day^?1. The rates of methane oxidation varied from 1.61 to 14.7 nmol CH₄dm^?3 day^?1. The rates of sulfate reduction varied from 1.35 to 16.2 μmol SO ₄ ^2? dm^?1 day^?1. The rate of methane formation in the sediments increased with depth, while sulfate reduction rates decreased (less than 1 μmol SO ₄ ^2? dm^?3 day^?1). These high concentrations of biogenic elements and high rates of microbial processes in the upper sediment layers suggest a specific type of trophic chain in the Chukchi Sea. The approximate calculated balance of methane emission from the water column into the atmosphere is from 5.4 to 57.3 μmol CH₄m^?2 day^?1.     

Sulfate reduction, methanogenesis, and methane oxidation in the upper sediments of the Vistula and Curonian Lagoons, Baltic Sea

Microbiological, biogeochemical, and isotope geochemical investigations of the upper sediments of the Vistula and Curonian lagoons, Baltic Sea, were carried out. High content of organic matter in the sediments was responsible for the high numbers (over 10¹⁰ cells cm^?3) and activity of heterotrophic microorganisms. The calculated integral rates of dark CO₂ assimilation for the upper 30 cm of the sediments varied 12.5 to 38.8 mmol m^?2 day^?1 and were somewhat higher in the Curonian Lagoon than in the Vistula Lagoon. Integral rates of sulfate reduction were higher in the more saline Vistula Lagoon. Rapid consumption of sulfates of the pore water resulted in intensified methanogenesis, with significantly higher rates detected in the silts of the Curonian Lagoon. High rates of methanogenesis in the Curonian Lagoon correlated with higher methane levels in its upper sediments and near-bottom water. The highest rates of methane oxidation were detected in the uppermost sediment horizons (oxidized or slightly reduced), which was an indication of the barrier role of aerobic methanotrophic bacteria. The calculated methane flows from the sediments into the water column were 0.45 and 0.007 mmol m^?2 day^?1 for the Vistula and Curonian Lagoons, respectively. Low methane flow from the sediments of the Curonian Lagoon resulted probably from the specific weather (wind) conditions during sampling. The near-stormy conditions in the Curonian Lagoon caused sediment detachment, resulting in methane release into the water column.     

Links between Geographic Location, Environmental Factors, and Microbial Community Composition in Sediments of the Eastern Mediterranean Sea

The bacterial community composition of marine surface sediments originating from various regions of the Eastern Mediterranean Sea (12 sampling sites) was compared by parallel use of three fingerprinting methods: analysis of 16S rRNA gene fragment heterogeneity by denaturing gradient electrophoresis (DGGE), terminal restriction fragment length polymorphism (T-RFLP), and analysis of phospholipid-linked fatty acid composition (PLFA). Sampling sites were located at variable depths (30–2860 m; water column depth above the sediments) and the sediments differed greatly also in their degree of petroleum contamination (0.4–18 μg g⁻¹), organic carbon (0.38–1.5%), and chlorophyll a content (0.01–7.7 μg g⁻¹). Despite a high degree of correlation between the three different community fingerprint methods, some major differences were observed. DGGE banding patterns showed a significant separation of sediment communities from the northern, more productive waters of the Thermaikos Gulf and the oligotrophic waters of the Cretan, S. Ionian, and Levantine Sea. T-RFLP analysis clearly separated the communities of deep sediments (>1494 m depth) from their shallow (<617 m) counterparts. PLFA analysis grouped a shallow station from the productive waters of the north with the deep oligotrophic sediments from the Ionian and Levantine Sea, with low concentrations of PLFAs, and hence low microbial biomass, as the common denominator. The degree of petroleum contamination was not significantly correlated to the apparent composition of the microbial communities for any of the three methods, whereas organic carbon content and sediment chlorophyll a were important in this regard.     

The temporal variation of intertidal nematodes in the Westerschelde I. The importance of an estuarine gradient

Biannual meiobenthic sampling (Spring and Autumn) was carried out in 1983–1989 at two fine sandy intertidal stations in the Westerschelde estuary. Both stations are exposed daily for more than one hour and are situated in the polyhaline and the mesohaline zone of the estuary. Average density data of non-selective deposit-feeders > predators > epigrowth-feeders > selective deposit-feeders for both stations are presented in spite of different nematode species composition. No difference between Spring and Autumn nor trend over 7 years could be detected. Higher total nematode densities are found at the polyhaline station (average 3200 ind. 10 cm^?2) in comparison with the mesohaline station (average 2300 ind. 10 cm^?2), a difference mainly due to higher non-selective deposit-feeders and predators densities in the polyhaline station. Each year, heterogeneous variance is found for all feeding types at the mesohaline station, but only for epigrowth-feeders and predators at the polyhaline station. The higher nematode density at the polyhaline station is probably caused by the more stable nematode structure. An unstable nematode temporal pattern at the mesohaline station is suggested to be combined with the detritus food chain system in the mesohaline zone. The unstable estuarine habitats are mainly caused by their upstream effects: the River Schelde, which clearly influences the stability of the nematode communities.     

Living benthic foraminifera of the Okhotsk Sea: Faunal composition, standing stocks and microhabitats

Live (Rose Bengal stained) benthic foraminifera were investigated in surface sediment samples from the Okhotsk Sea to reveal the relationship between faunal characteristics and environmental parameters. Live benthic foraminifera were quantified in the size fraction > 125 µm in the upper 8 cm of replicate sediment cores, recovered with a multicorer at five stations along the Sakhalin margin, and at three stations on the southwestern Kamchatka slope. The stations are from water depths between 625 to 1752 m, located close or within the present Okhotsk Sea oxygen minimum zone, with oxygen levels between 0.3 and 1.5 ml l^- 1. At the high-productivity and ice-free Kamchatka stations, live benthic foraminifera are characterized by maximal standing stocks (about 1700-3700 individuals per 50 cm²), strong dominance of calcareous species (up to 87-91% of total live faunas), and maximal habitat depths (down to 5.2-6.7 cm depth). Vertical distributions of total faunal abundances exhibit a clear subsurface maximum in sediments. At the Sakhalin stations, which are seasonally ice-covered and less productive, live benthic foraminifera show lower standing stocks (about 200-1100 individuals per 50 cm²), lower abundance of calcareous species (10-64% of total live faunas), and shallower habitat depths (down to 2.5-5.4 cm depth). Faunal vertical distributions are characterized by maximum in the uppermost surface sediments. It is suggested that 1) lower and strongly seasonal organic matter flux, caused by the seasonal sea ice cover and seasonal upwelling, 2) lower bottom water oxygenation (0.3-1.1 ml l^- 1), and 3) more pronounced influence of carbonate undersaturated bottom water along the Sakhalin margin are the main factors responsible for the observed faunal differences. According to species downcore distributions and average living depths, common calcareous species were identified as preferentially shallow, intermediate and deep infaunal. Foraminiferal microhabitat occupation correlates with the organic matter flux and the depth of the oxygenated layer in sediments.