Restriction Fragment Length Polymorphism Analysis of Large Subunit rDNA of Symbiotic Dinoflagellates from Scleractinian Corals in the Zhubi Coral Reef of the Nansha Islands

Zooxanthellae are very important for the coral reef ecosystem. The diversity of coral hosts Is high in the South China Sea, but the diversity of zooxanthellae has not yet been investigated. We chose the Zhubi Coral Reef of the Nansha Islands as the region to be surveyed in the present study because it represents a typical tropical coral reef of the South China Sea and we investigated zooxanthellae diversity In 10 host scleractinlan coral species using polymerase chain reaction （PCR） of the large subunit rRNA and restriction fragment length polymorphlsm （RFLP） patterns. Poclllopora verrucosa, Acropora pefifera, Acropora mlllepora, Fungla fungltes, Galaxea fasclcularls, and Acropora pruinosa harbor Clade C, Goniastrea aspera harbors Clade D, and Acropora formosa harbors Clades D and C. Therefore, the Clade C is the dominant type in the Zhubi Coral Reef of the Nansha Islands. Furthermore, the results of the present also disprove what has been widely accepted, namely that one coral host harbors only one algal symblont. The coral-algal symbiosis Is flexible, which may be an Important mechanism for surviving coral bleaching. Meanwhile, on the basis of the results of the present study, we think that Symblodlnium Clade D may be more tolerant to stress than Symbiodlnlum Clade C.     

Characterization of Communities of Heterotrophic Bacteria Associated with Healthy and Diseased Corals in Nha Trang Bay (Vietnam)

A comparative investigation of the heterotrophic microflora of 11 species of healthy corals and of white-band-diseased and yellow-band-diseased corals inhabiting the reefs of Nha Trang Bay (Vietnam), which has been exposed to anthropogenic impact, was performed. Fifty-nine strains of heterotrophic bacteria isolated on Y/K and Endo media were investigated and characterized. All the isolates were identified at the genus level by consideration of the results of analysis of their phenotypic properties, determination of the molar percent of G+C bases in their DNA, and the composition of the fatty acids of lipids. In the composition of the microflora of tissues of healthy corals, γ-proteobacteria prevailed, with halomonads being dominant among them. In addition, the gram-negative bacteria included Pseudomonas and Vibrio spp., members of the Cyto-phaga-Fla-vobacterium-Bacteroides (CFB) phylogenetic cluster, and Moraxella sp. The gram-positive bacteria revealed included Bacillus, Staphylococcus, Halococcus, and Micrococcus spp., and coryneform bacteria. In the composition of the microflora of the tissues of affected corals, bacteria of the family Enterobacteriaceae and of the genera Planococcus and Arthrobacter, which were not revealed in healthy hydrobionts, were found. The anthropogenic impact is not the sole factor determining the infection of corals.     

The significance and future potential of using microbes for assessing ecosystem health: The Great Lakes example

An overview of current status of microbial research in the Great Lakes consisting of structural, toxicological, and cytological aspects is presented. A variety of techniques for the identification and enumeration of food-web parameters such as bacteria, autotrophic picoplankton, heterotrophic nanoflagellates, ciliates, and various size fractions of phytoplankton have been evaluated. An extensive lakewide survey of the Great Lakes conducted in 1991 indicated high bacterial abundance in Lake Erie and the Detroit River, and lowest numbers in the oligotrophic Georgian Bay and Lake Superior. The autotrophic picoplankton were lowest in the contaminated ecosystems of the Detroit River, St. Clair River, and Lake St. Clair. This persistent sensitivity of the autotrophic picoplankton to environmental perturbation make them ideal candidates as early warning indicators of ecosystem health. This is the first time that such a comprehensive strategy has been attempted encompassing all important components of the microbial food-web in the Great Lakes. These results clearly demonstrate the significance and potential of microbes in providing a multi-trophic, dynamic, and holistic picture of the aquatic ecosystems. Furthermore, the necessity of monitoring microbial food-web parameters is recommended and emphasized.     

BICARBONATE STIMULATION OF CALCIFICATION AND PHOTOSYNTHESIS IN TWO HERMATYPIC CORALS1

A wide range of bicarbonate concentrations was used to monitor the kinetics of bicarbonate (HCO₃^?) use in both photosynthesis and calcification in two reef‐building corals, Porites porites and Acropora sp. Experiments carried out close to the P. porites collection site in Barbados showed that additions of NaHCO₃ to synthetic seawater proportionally increased the calcification rate of this coral until the concentration exceeded three times that of seawater (6 mM). Photosynthetic rates were also stimulated by HCO₃^? addition, but these became saturated at a lower concentration (4 mM). Similar experiments on aquarium‐acclimated colonies of Indo‐Pacific Acropora sp. showed that calcification and photosynthesis in this coral were enhanced to an even greater extent than P. porites, with calcification continuing to increase above 8 mM HCO₃^?, and photosynthesis saturating at 6 mM. Calcification rates of Acropora sp. were also monitored in the dark, and, although these were lower than in the light for a given HCO₃^? concentration, they still increased dramatically with HCO₃^? addition, showing that calcification in this coral is light stimulated but not light dependent.     

Chlorophyll budget in a productive tropical pond: algal production,sedimentation, and grazing by microzooplankton and rotifers

Chlorophyll a and pheopigment standing stocks and fluxes were used during a two weeks colonization experiment in a productive tropical pond (Layo, Côte d'Ivoire) in order to establish a chlorophyll budget. The experiment started from an azoïc state (the pond was dried, limed and progressively filled with ground water). Algal production was the only input to the phytoplanktonic system, while grazing and algal sedimentation were the main outputs. Chlorophyll a reflected the algal biomass, and degradation pigments were considered as an index of grazing by zooplankton (here, protozoans and rotifers). An estimation of the input through the algal growth rate was performed for the two main biological events observed during the study. The first algal bloom, with a large picoplankton participation, was mainly regulated by microzooplankton (increase of the peak) and rotifers (decrease of the peak). The second bloom (exclusively nanoplankton) was regulated by rotifers (increase) and by sedimentation of living cells (decrease). This last process was related to a sudden exhaustion of ammonia in the water column. Because of the time-lag between algal proliferation and zooplanktonic bloom, the phytoplanktonic biomass was able to be adjusted according to the availability of nutrients. This self-regulation took the form of sinking of active algal cells, resulting in a transient reduction of the food available for rotifers. This process had drastic consequences in these shallow waters, since a major part of the phytoplankton produced was removed from the pelagic system. For an optimal exploitation of the natural resources of an aquaculture pond, a study of the equilibrium nutrients-phytoplankton-zooplankton would provide a basis for artificial intervention, with a view to limit the impact of this mode of natural regulation.     

New genera of Copepoda (Poecilostomatoida) from the scleractinian coral Psammocora in New Caledonia

Three new monotypic genera of copepods (Poecilostomatoida) are associated with the hermatypic shallow-water coral Psammocora (Stephanaria) logianensis near Noumea, New Caledonia: in the Anchimolgidae, Lipochaetes extrusus (antenna 4-segmented, endopods absent in legs 3 and 4) and Dumbeana undulatipes (antenna 3-segmcntcd, endopod of leg 3 with formula 0 1; 0–2; 1,11,2; leg 4 endopod with 0 1:1); and in the Rhynchomolgidae; Emunoa proknta (leg 4 endopod with 0 1;II, antenna 4-segmented, mandible witli outer pointed process and inner row of spines). Copepoda (primarily Poecilostomatoida and Siphonostomatoida, but also relatively few Cyclopoida and Harpacticoida) are very frequent associates or parasites of Scleractinia. At present 245 species from 48 scleractinian coral genera are known. Species of these copepod associates, their host genera, and localities, described since (and those not included in) previous publications of the author are listed.     

Specialist corallivores dominate butterflyfish assemblages in coral‐dominated reef habitats

This study examined the dietary habits and functional composition of butterflyfishes in the Chagos Archipelago, central Indian Ocean. Eighteen species of butterflyfishes were recorded in Chagos, including six obligate corallivores (Chaetodon bennetti, Chaetodon guttatissimus, Chaetodon meyeri, Chaetodon trifascialis, Chaetodon trifasciatus and Chaetodon zanzibarensis), five facultative corallivores (Chaetodon auriga, Chaetodon falcula, Chaetodon interruptus, Chaetodon kleinii and Chaetodon madagaskariensis), two non‐corallivores (Chaetodon lunula and Chaetodon xanthocephalus) and a further five species (Chaetodon citrinellus, Chaetodon lineolatus, Heimitaurichthys zoster, Heniochus monoceros and Forcipiger flavissimus), for which local dietary habits were not studied. There were marked differences in the abundance of butterflyfishes among sites and between reef zones, mostly associated with variation in abundance of scleractinian corals. Obligate coral‐feeding species (mostly C. trifascialis) dominated across all sites. This study suggests that coral feeding and high levels of dietary specialization contribute to high population‐level fitness among coral reef butterflyfishes. Despite being more vulnerable to habitat disturbances and coral loss, it appears likely that specialist coral‐feeding butterflyfishes are also much more resilient to occasional disturbances, and therefore dominate in a wide range of coral reef habitats.     

Evidence of an inflammatory-like response in non-normally pigmented tissues of two scleractinian corals

Increasing evidence of links between climate change, anthropogenic stress and coral disease underscores the importance of understanding the mechanisms by which reef-building corals resist infection and recover from injury. Cellular inflammation and melanin-producing signalling pathway are two mechanisms employed by invertebrates to remove foreign organisms such as pathogens, but they have not been recorded previously in scleractinian corals. This study demonstrates the presence of the phenoloxidase (PO) activating melanin pathway in two species of coral, Acropora millepora and a massive species of Porites, which both develop local pigmentation in response to interactions with a variety of organisms. L-DOPA (3-(3,4-dihydroxyphenyl)-L-alanine) substrate-based enzyme activation assays demonstrated PO activity in healthy tissues of both species and upregulation in pigmented tissues of A. millepora. Histological staining conclusively identified the presence of melanin in Porites tissues. These results demonstrate that the PO pathway is active in both coral species. Moreover, the upregulation of PO activity in areas of non-normal pigmentation in A. millepora and increased melanin production in pigmented Porites tissues suggest the presence of a generalized defence response to localized stress. Interspecific differences in the usage of pathways involved in innate immunity may underlie the comparative success of massive Porites sp. as long-lived stress tolerators.     

北冰洋微型浮游生物分布及其多样性

近年来随着全球气候变化对北冰洋生态环境的影响日益显现,北极微型浮游生物生态学研究得到了广泛的重视和实质性的进展。对北冰洋微型浮游生物的主要类群:异养细菌、古菌、光合异养原核生物和微型真核生物的分布及其多样性研究进展做了概述,并在此基础上展望了未来北冰洋微型浮游生物学研究。     

Universal Primers for Amplification of Mitochondrial Small Subunit Ribosomal RNA-Encoding Gene in Scleractinian Corals

We describe the construction of polymerase chain reaction primers designed to amplify a portion of the mitochondrial (mt) small subunit ribosomal (SSU) RNA-encoding genes in scleractinian corals. Combinations of cloning and sequencing show that the amplified fragments are between 694 and 896 bp in length. Alignment of the amplified DNA sequences to the published mt SSU rRNA genes of Metridium senile and Sarcophyton glaucum indicates several conserved regions among actiniarian, corallimorpharian, octocorallian, and scleractinians, suggesting this primer set can successfully amplify over 80% of the mt SSU rDNA region of scleractinian corals. Surveys of sequence variation and estimation of the rate of evolution show an extremely slow divergence of the SSU rRNA gene in the family Acroporidae. Received June 11, 1999; accepted October 4, 1999.     

The nature of the skeleton and skeletogenic tissues in the Cnidaria

Calcification of zooxanthellate and non-zooxanthellate corals from 2 classes and 3 orders of Cnidaria was investigated using scanning and transmission electron microscopy and light microscopy. The ultrastructure of the skeleton and skeletogenic tissues (the calicoblastic ectoderm) from areas of active and non-active skeleton deposition were investigated. The results show that the fundamental cellular mechanism of calcification is similar in all 3 orders, and that the role of endosymbiotic zooxanthellae may be one that is concerned with the removal of waste products of the calcification process. The results are discussed with respect to the concepts of calcification and its evolution in the Cnidaria.     

Nutrient and Grazer-Mediated Effects on Picoplankton and Size Structure in Phytoplankton Communities

This study examines the factors which contribute to the abundance of algal picoplankton in lakes. A three-year field study of a meso-eutrophic lake was compared with observations from oligotrophic and highly eutrophic lakes in the region. Trophic state alone (oligotrophic vs. eutrophic) was not a good predictor of the importance of picoplankton; smaller cells were relatively abundant when phosphorus was limiting other phytoplankters, but also when nitrogen was in surplus. Subsequent field experiments found that picoplankton growth was stimulated by N, but not by P additions. This relationship was strongly affected by light and grazer levels. Grazers apparently mediate the effects of nutrient deficiency, and favor the growth of larger algal size classes, especially nanoplankton. The flux of P within experimental enclosures was controlled by picoplankton abundance under low nutrient conditions, but was a function of total phytoplankton biomass under P surplus.     

In situ nurseries enhance coral transplant growth in sedimented waters

In situ nurseries have been a crucial part of coral reef restoration initiatives for the past two decades. However, the advantages over direct transplantation in sedimented waters has yet to be examined. In the present study, we showed that Pachyseris speciosa and Pocillopora damicornis fragments reared in in situ nurseries (NR) in Singapore’s sedimented waters grew significantly faster (by three to five times) than those which were directly transplanted (DT) onto the substrates. The increased growth rate during the nursery phase augmented the size of NR transplants, and had a flow-on effect on their performance during the post-transplantation phase. Overall, the maximum diameter of the NR transplants was 1.8–2.7 times larger than DT transplants after 11 months. The growth enhancement of the nursery-reared transplants improved the cost-effectiveness of our restoration effort: the estimated cost per centimetre growth of NR transplants was one-fifth of the DT corals despite the additional costs incurred to construct the nurseries. These results highlight that coral nurseries are beneficial to reef restoration in chronically sedimented waters.     

Heavy Metal Pollution in Reef Corals of Tuticorin Coast,Southeast Coast of India

This work investigates the metal pollution documented in the skeletons of selected coral species like Acropora formosa, Montipora digitata and Porites andrewsi from the Tuticorin Coast, one of the least studied areas in the Bay of Bengal. Relating heavy metal concentrations to morphological features of skeletons, highest concentrations of all the metals (except Cu and Zn) were found in ramose or branching types of corals. Irrespective of their growth characteristics or patterns, all these species displayed higher concentrations of Pb, Ni, Mn, and Cd within the skeletal part. The study area is currently exposed to a larger degree of metal pollution (natural and anthropogenic) than even before, as a result of the increasing environmental contamination from sewage discharges, the misuse of agricultural chemicals and fertilizers, and top soil erosion. The concentrations of heavy metals obtained in the present study are compared with values from earlier works around the world. This study indicates that corals are vulnerable to the accumulation of high concentrations of heavy metals in their skeletons and therefore can serve as proxies to monitor environmental pollution.     

Indicators of UV Exposure in Corals and Their Relevance to Global Climate Change and Coral Bleaching

A compelling aspect of the deterioration of coral reefs is the phenomenon of coral bleaching. Through interactions with other factors such as sedimentation, pollution, and bacterial infection, bleaching can impact large areas of a reef with limited recovery, and it might be induced by a variety of stressors including temperature and salinity extremes, and ultraviolet light. Under conditions of ocean warming, often associated with calm and stratified waters, photobleaching of UV-absorb-ing chromophoric dissolved organic matter (CDOM) is increased, and penetration of both UV-B and UV-A is greatly enhanced. Indices of UV-specific effects in coral tissue are needed to test whether UV increases, associated with global climate change, are harmful to corals. To address this challenge, we have evaluated UV-specific effects in corals and have characterized factors that alter penetration of UV radiation over coral reefs. An immunoblotting assay was developed to examine UV-specific lesions (thymine dimers) in coral and zooxanthellae DNA. We observed dose-dependent increases of thymine dimers in coral (Porites porites var porites) exposed to artificial solar irradiance in a solar simulator, although effects were not strictly proportional. UV measurements were made in July 1999 at Eastern Sambo reef and nearby sites, including profiling along transects from reef to shore. Results of these analyses indicate that the coral at Eastern Sambo reef (at 3-4 meters) were receiving UV-B radiation that was equivalent to 25 to 30% of surface UV irradiance. However, the water just inside the reef in Hawk Channel (located closer to land) was considerably more opaque to UV. This water photobleached with loss of UV absorbance and fluorescence when it was exposed to simulated solar radiation. These results indicate that photobleaching of the DOM and transport of near-shore water out over the reefs might play a key role in controlling UV penetration to the reef surface.     

High biomass and production of picoplankton in a Chinese integrated fish culture pond

The phytoplankton dynamics of a Chinese integrated fish culture pond in the suburbs of Shanghai were studied in September and October 1989. The chlorophyll a concentration was high with a range of 62.5–127.3 µg l^–1; however, daily net production of phytoplankton was relatively low, with a range of 0.53–1.94 gC m ^–2 d^–1. Of the total phytoplankton biomass, 70–87% was composed of nanoplankton (<10 µm) and picoplankton, probably because of the selective feeding by phytoplanktivorous carp. In particular, the chlorophyll a concentration of picoplankton was 2.1 – 14.1 mg m ^–3, and its contribution to total phytoplankton production rate was high (18–68%).     

The Roles of Introgression and Climate Change in the Rise to Dominance of Acropora Corals

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Interspecific hybridization and restricted trans-Pacific gene flow in the Tropical Eastern Pacific Pocillopora

Coral reefs in the Tropical Eastern Pacific (TEP) are among the most isolated in the world. This isolation has resulted in relatively low species diversity but comparatively high endemism. The dominant reef-building corals of the TEP are the Pocillopora corals, a ubiquitous Indo-Pacific genus commonly regarded as inferior reef-builder. In addition to being the dominant reef-builders in the TEP, the Pocilloporids have undergone a reproductive shift from internally brooding larvae through most of their Indo-Pacific range to free-spawning in the TEP. Using genetic data from the internally transcribed spacer (ITS) regions of the nuclear ribosomal DNA gene cluster, we show here that this apparent reproductive shift coincides with interspecific hybridization among TEP Pocillopora species. We document a pattern of one-way gene flow into the main TEP reef builder P. damicornis from one or both of its TEP congeners — P. eydouxi and P. elegans . Our data provide preliminary evidence that trans-Pacific gene flow in P. damicornis between the Central and Eastern Pacific is restricted as well (Φ_ST = 0.419, P  < 0.0001). In combination, these results suggest that Eastern Pacific corals exist in relative isolation from their Central Pacific counterparts and interact with each other differently via hybridization.     

Zooplankton Distribution in Tropical Reservoirs,South China

The zooplankton of 18 reservoirs of South China was investigated in 2000. 61 Rotifera species, 23 Cladoceras and 14 Copepodas were identified. The most frequent Rotifera genera were Keratella, Brachionus, Trichocerca, Diurella, Ascomorpha, Polyarthra, Ploesoma, Asplanchna, Pompholyx and Conochilus. Bosmina longirostris, Bosminopsis deitersi, Diaphanosoma birgei, D. brachyurum and Moina micrura were typical of Cladocera in the reservoirs. Phyllodiaptomus tunguidus, Neodiaptomus schmackeri and Mesocyclops leuckarti were the most frequent Copepoda and M. leuckarti dominated Copepoda in most reservoirs. High zooplankton species richness with low abundance was characteristic of the throughflowing reservoir, whereas low species richness with low abundance was found in the reservoir with the longest retention time. Relative high abundance and medium species diversity were the distinction of intermediate retention time reservoirs.