Prostatectomy in a county hospital; a review of 677 cases in a six-year period

Transurethral procedures were used in 620 of 677 cases in which prostatectomy was done (principally by residents supervised by a urologist) at a county hospital in a six-year period. Open operations were used in the other 57 cases. Results were classified as "excellent" in 46.8 per cent of the transurethral cases and as "good" in 36.3 per cent.     

Theobromine intoxication in a red fox and a European badger in Sweden

A red fox (Vulpes vulpes) and a European badger (Meles meles) were found dead on a golf-course in October 1997 near Stockholm (Sweden). At necropsy, both animals were obese and the main finding was acute circulatory collapse. Theobromine intoxication was suspected as chocolate waste was available at a nearby farm and no other cause of death could be detected. Gastric contents and samples of liver from both animals were analyzed by reversed-phase high pressure liquid chromatography for the presence of methylxanthines. Theobromine and caffeine were detected in gastric contents and theobromine was identified in the liver samples from both animals. This appears to be the first report of theobromine intoxication in the red fox and the European badger.     

Infertility in a cryptorchid bull: a case report

A unilateral cryptorchid bull stationed in an AI center for 3.5 yr was studied to determine if maintaining such a bull could be justified. The following parameters were determined: quantity and quality of the ejaculates, basal and stimulated plasma testosterone concentrations, and the histology and testosterone concentrations of the testicles. The bull produced 232 ejaculates of which 125 (53.8%) were immediately discarded; the rest (107 ejaculations) were processed into pellets. Two of the 107 frozen ejaculates (2%) were found to be of excellent quality, 37 were (34.5%) of good quality, 45 were (42%) of satisfactory quality and 23 were (21.5%) of poor quality. Treatment of the calf with GnRH and hCG at 4 and 5 mo of age did not initiate the descent of the retained testicle. Testosterone concentrations measured at 14 mo, after hCG stimulus, indicated that the bull had impaired steroidogenesis when compared with 2 control bull calves. Post mortem examination revealed a small left testicle in the inguinal canal and a normal right testicle as well as normal secondary sex glands. During the breeding period at the AI center, the bull's peripheral testosterone concentrations decreased from 2.2 to 0.95 ng/ml Testosterone concentrations in the parenchymal tissue of the scrotal testicle were higher than in the parenchyma of the retained testicle (98.2 vs 53.9 ng/g). In contrast, the epididymis of the scrotal testicle had a lower testosterone concentration than the epididymis of the retained testicle (10.8 vs 33. 0 ng/g). On histological examination no spermatozoa were found in the retained testicle, the Sertoli cells showed fat degeneration, and fibrotic tissue surrounded the tubuli seminiferi. No pathological changes were found in the normal scrotal testicle. In conclusion, no justification was found for maintaining such a bull in the AI center for breeding purposes.     

Persister cells in a biofilm treated with a biocide

This study investigated the physiology and behaviour following treatment with ortho-phthalaldehyde (OPA), of Pseudomonas fluorescens in both the planktonic and sessile states. Steady-state biofilms and planktonic cells were collected from a bioreactor and their extracellular polymeric substances (EPS) were extracted using a method that did not destroy the cells. Cell structure and physiology after EPS extraction were compared in terms of respiratory activity, morphology, cell protein and polysaccharide content, and expression of the outer membrane proteins (OMP). Significant differences were found between the physiological parameters analysed. Planktonic cells were more metabolically active, and contained greater amounts of proteins and polysaccharides than biofilm cells. Moreover, biofilm formation promoted the expression of distinct OMP. Additional experiments were performed with cells after EPS extraction in order to compare the susceptibility of planktonic and biofilm cells to OPA. Cells were completely inactivated after exposure to the biocide (minimum bactericidal concentration, MBC = 0.55 ± 0.20 mM for planktonic cells; MBC = 1.7 ± 0.30 mM for biofilm cells). After treatment, the potential of inactivated cells to recover from antimicrobial exposure was evaluated over time. Planktonic cells remained inactive over 48 h while cells from biofilms recovered 24 h after exposure to OPA, and the number of viable and culturable cells increased over time. The MBC of the recovered biofilm cells after a second exposure to OPA was 0.58 ± 0.40 mM, a concentration similar to the MBC of planktonic cells. This study demonstrates that persister cells may survive in biocide-treated biofilms, even in the absence of EPS.     

Developmental change in a myelin-associated glycoprotein: a comparative study in rodents

In developing rats, a fucose-labeled glycoprotein (mGP) which is closely associated with myelin has a higher apparent molecular weight in immature myelin in comparison with mature myelin. In order to see whether this developmental difference occurred in other species, we investigated different rodents of the suborder Myomorpha. Glycoproteins were labeled in vivo by injection of [³H]fucose of [¹⁴C]fucose, and purified myelin fractions were prepared. Proteins were extracted with SDS and separated by polyacrylamide gel electrophoresis. Using double-labeling techniques, the ³H- and ¹⁴C-labeled mGP were compared in different samples. We found the shift in the apparent molecular weight of mGP during development in rats, gerbils, and hamsters, but we were unable to demonstrate it in mice and prairie deer mice. In these latter species, the mGP of smaller apparent molecular weight was already present at the earliest ages at which it was possible to isolate myelin. Although some rodents do not exhibit the developmental change, all showed a common feature: the presence of the same small molecular weight mGP in mature myelin. It may be that the glycoprotein of smaller size is a prerequisite for the normal compaction and maturation of myelin.     

Persister cells in a biofilm treated with a biocide

This study investigated the physiology and behaviour following treatment with ortho-phthalaldehyde (OPA), of Pseudomonas fluorescens in both the planktonic and sessile states. Steady-state biofilms and planktonic cells were collected from a bioreactor and their extracellular polymeric substances (EPS) were extracted using a method that did not destroy the cells. Cell structure and physiology after EPS extraction were compared in terms of respiratory activity, morphology, cell protein and polysaccharide content, and expression of the outer membrane proteins (OMP). Significant differences were found between the physiological parameters analysed. Planktonic cells were more metabolically active, and contained greater amounts of proteins and polysaccharides than biofilm cells. Moreover, biofilm formation promoted the expression of distinct OMP. Additional experiments were performed with cells after EPS extraction in order to compare the susceptibility of planktonic and biofilm cells to OPA. Cells were completely inactivated after exposure to the biocide (minimum bactericidal concentration, MBC = 0.55 ± 0.20 mM for planktonic cells; MBC = 1.7 ± 0.30 mM for biofilm cells). After treatment, the potential of inactivated cells to recover from antimicrobial exposure was evaluated over time. Planktonic cells remained inactive over 48 h while cells from biofilms recovered 24 h after exposure to OPA, and the number of viable and culturable cells increased over time. The MBC of the recovered biofilm cells after a second exposure to OPA was 0.58 ± 0.40 mM, a concentration similar to the MBC of planktonic cells. This study demonstrates that persister cells may survive in biocide-treated biofilms, even in the absence of EPS.     

LCA of a tomato crop in a multi-tunnel greenhouse in Almeria

Purpose

Protected crops have expanded significantly in the Mediterranean area over the last few decades as a successful means to provide abundant and high-quality produce. Although resources are generally used efficiently, greenhouse areas cause major environmental impacts. The aim of this work was to study, from an environmental point of view, the improvement capacity of greenhouse areas in the Mediterranean region and to assess several alternative agricultural practices to decrease their contribution to the environmental impacts in this system.

Materials and methods

The methodology used was life cycle assessment (LCA) based on a tomato crop grown in a multi-tunnel greenhouse in Almeria, on the southeast coast of Spain. The functional unit chosen was 1 ton of loose classic tomatoes. Five midpoint impact categories and one energy flow indicator were selected for their relevance. The agricultural practice alternatives evaluated were reduction of volume of substrate and fertilizers, extension of substrate and greenhouse life span and increase in renewable energy for electricity production.

Results and discussion

The results indicated that the main contributors to impact categories in the tomato production were structure, auxiliary equipment and fertilizers. Structure accounted for between 30 and 48?% of the contributions, depending on the impact category. The principal burdens in the auxiliary equipment stage were substrate and consumption of electricity. Fertilizers environmental impacts were due to emissions during their manufacture and application to the crop. In a best-case option, taking into account the best alternatives, contributions to the impact categories were reduced by between 17 and 30?%. The LCA methodology proved to be a useful tool to evaluate the environmental damage of this agricultural activity. The importance of including farm infrastructure in the assessment was demonstrated as it was a major contributor. The risk of eutrophication could be reduced by adjustment of the fertilizers?Cwater balance and implementation of a closed-loop irrigation system. Future technological improvements should be developed to increase yields and thereby directly reduce the environmental burdens per unit produce.

Conclusions

The present study served to assess the environmental impacts of a tomato crop in a multi-tunnel greenhouse on the coast of Almeria. The assessment was used to evaluate alternatives for improvement of cleaner production in greenhouse areas. Further research should focus on assuring the feasibility of the suggested options.     

Population structure of a monophagous moth in a patchy landscape

1. The population structure of a monophagous noctuid moth, Abrostola asclepiadis , living on a patchily distributed perennial herb, Vincetoxicum hirundinaria is described. The study took place over 5 years at a landscape scale (about 12 km²).
2. Patch occupancy rates and population densities were studied in relation to patch size, degree of patch isolation, level of sun exposure and distance from the coast. In addition, flight tests in the laboratory were performed to estimate the potential dispersal capacity of the moth.
3. Occupancy rates were high and the likelihood of extinction depended on patch size. Small patches were less likely to be occupied than were large patches (> 10 m²). Sun-exposed patches were occupied for a lower proportion of years than were shaded patches. No distance effects could be discerned at the spatial scale of study, presumably because the insect is a strong flier.
4. Population densities in occupied patches decreased with increasing patch size. Furthermore, insect densities tended to increase with distance from the coast. Density changes in patches were synchronized.
5. The studied insect population can be described as a 'patchy population' sensu Harrison (1991) with spatially correlated population dynamics. These dynamics are superimposed on a landscape gradient.     

Care in a birth room versus a conventional setting: a controlled trial.

A controlled clinical trial was carried out to assess whether a birth room setting would influence the care of mothers and newborns. Of the 163 low-risk women enrolled, 49 (30%) manifested some prenatal risk and were excluded. The remaining 114 were allocated by strict alternation to a birth room or a conventional setting. Of the 56 women allocated to the birth room, 63% of the primiparas and 19% of the multiparas were later transferred. The numbers in the two settings who had oxytocin stimulation, epidural anesthesia, forceps delivery or cesarean section did not show statistically significant differences. The episiotomy rates were slightly lower in the birth room than in the conventional setting, and the rates of an intact perineum were higher in the birth room. Neither the Apgar scores nor the morbidity rates of the infants showed statistically significant differences related to the setting to which the mother had been allocated, although more infants from the conventional setting were admitted to a special care unit. Both "experimental" groups of women less often received routine perineal shaving, enemas or intravenous infusions than did an obstetrically similar nonexperimental comparison group. Despite the apparent inability in this setting for the birth room to influence the rate of major obstetric procedures (except for episiotomy) and outcomes, the authors believe that a birth room is desirable in tertiary care centres as well as in community hospitals.     

Mutagenesis at a specific position in a DNA sequence

Predefined changes in a known DNA sequence were introduced by a general method. Oligodeoxyribonucleotides complementary to positions 582 to 593 of the viral DNA strand of the bacteriophage phiX174 am3 mutant (pGTATCCTACAAA), and to the wild type sequence in this region (pGTATCCTACAAA), were synthesized and used as specific mutagens. Each of these oligonucleotides was incorporated into a complete circular complementary strand when used as primer on a genetically heterologous viral strand template, by the combined action of subtilisin-treated Escherichia coli DNA polymerase I and T4 DNA ligase. Incomplete duplexes were removed or were inactivated by nuclease S1 and the products were used to transfect spheroplasts of E. coli. Both oligonucleotides induced specific mutations at high efficiency when used with heterologous template (15% mutants among progeny phage). The am phages isolated by this procedure are phenotypically gene E mutants, and contain A at position 587 of the viral strand. They thus appear identical with am3 and provide evidence that the change G leads to A at position 587 is sufficient to produce a defective E function. Since the template for the induction of am mutants carried another genetic marker (sB1), the strains carrying the induced mutations have the new genotype am3 sB1. It should be possible to introduce the am3 mutation into any known mutant strain of phi174 using this same oligonucleotide. Both possible transition mutations were induced in these experiments. In principle, the method could also induce transversions, insertions, and deletions. The method should be applicable to other circular DNAs of similar size, for example recombinant DNA plasmids.     

Craniorachischisis in a squirrel monkey

A stillborn squirrel monkey had craniorachischisis. The calvarium was absent and the skin and vertebral neural arches were cleft from the foramen magnum to the midlumbar region. Cranial nerves and degenerating neural tissue were attached to the cranial base and there were remnants of spinal cord in skin-covered areas of the spinal canal. The adrenal glands were normal. This is the only reported case of craniorachischisis in a monkey fetus.     

Crayfish induce a defensive shell shape in a freshwater snail

Abstract. This study was undertaken to determine whether intraspecific variation in shell morphology of the freshwater snail Elimia (= Goniobasis ) livescens is caused by predator-induced morphological changes. Juvenile snails from 3 populations were grown in the presence of effluent from predatory crayfish feeding on conspecific snails or in effluent from conspecific snails only. Snails from one population, Clear Creek, exhibited a predator-induced morphology; they grew a narrow body whorl when exposed to the effluent from crayfish. Experimental feeding trials with crayfish and snails from Clear Creek were conducted to determine whether a narrow body whorl reduced predation in the presence of the crayfish Orconectes propinquus . In the feeding trials, snails with a narrow body whorl were eaten less frequently than snails with wider shells. However, there was no difference in overall size (length) between snails that were eaten and those that were not. Thus, juvenile snails from Clear Creek exposed to the presence of crayfish were induced to develop relatively narrow shells, which reduce the risk of successful attack by these crayfish. Hence the induced shell morphology is probably a defense against predation by crayfish.     

Temporal patterns in a fish assemblage of a semiarid mangrove zone in Madagascar

Gillnet sampling was conducted for a year in a tropical mangrove creek (SW Madagascar), characterized by a limited freshwater influence, a high turbidity and a tidal range up to 3 m. Sixty species of juvenile fishes were caught, 44 species being of commercial interest. Catches were dominated by Gerreidae (27% of total abundance), Teraponidae (16%), Carangidae (13%) and Sparidae (12%). The temporary resident fishes in the mangrove zone represented 50% of the species and 97% of the total abundance, the other species being rare (less than five individuals). The species richness, abundance and biomass per netting were low in the middle of the cool season (July-August). Monthly changes in the fish assemblage were particularly complex, with three species groups displaying a clear seasonal pattern, some species succeeding one another in a rather unstructured way, and three species abundant throughout the year. There was no clear structuring effect of temperature, salinity and turbidity on the fish assemblage. However, tidal, lunar and diel effects on the composition of the fish assemblage were evident. The species overlap between the Sarodrano mangrove fauna and the adjacent coral reef fauna is particularly weak with six species in common and shows that the mangrove plays only a very limited nursery role for coral reef species.     

用微卫星标记构建两系稻培矮64s/E32的分子遗传连锁图 Construction of a Microsatellite Linkage Map in a DH Population

用两系杂交稻强优组合培矮64s/E32的一个加倍单倍体（DH）群体,共86个株系,构建了水稻的SSR标记遗传连锁图。选用美国康耐尔大学公布的302对SSR引物,共有127对在两个亲本间检测到多态性,比率为4205%。建成的水稻染色体的图谱（记为PEMAP）共包含122个SSLP标记座位,总长度为1213.4 cM。PEMAP与Temnykh等发表的图谱（记为CUMAP）具有很高的可比性,绝大多数标记都被定位于相同的染色体上,且排列顺序一致。该DH群体的偏分离情况较严重,122个标记座位中有34个发生显著偏分离,比例达27.8%。值得注意的是,在第1、3、10、11染色体上的标记全部偏向培矮64s,第4、6、7、8、9染色体上的标记则全部偏向E32。 Abstract:A doubled haploid population (DH) consisting of 86 lines derived by anther culture of Peiai64s/E32,a two-line hybrid rice variety with high heterosis,was used to construct a microsatellite or SSLP linkage map of rice chromosomes.A total of 302 PCR primers for SSLP analysis on these chromosomes were chosen from a map published by Cornell University (designated CUMAP) and 127 (42.05%) of them were found polymorphic between the two parents.Those polymorphic PCR primers were used for population genotyping.The map (designated PEMAP) comprises 122 microsatellite maker loci,covering a total length of 1213.4 cM.The PEMAP is highly comparable with the CUMAP.Most of the markers were mapped onto the same chromosomes and aligned in the same order.Serious segregation distortion was observed in this DH population,with 34 (27.8%) markers showing significant deviation.It is noted that all markers on chromosomes 1,3,10 and 11 were biased to Peiai64s,while those on chromosomes 4,6,7,8 and 9 were opposite.     

Establishment of phage and bacteria in a sterilized compost in a glasshouse

Summary Four strains ofRhizobium trifolii were individually inoculated to pots containing sterilized sand vermiculite mixture, half of which were seeded with red clover and half not. Pots were maintained in an ordinary glasshouse and watered with tap water.Phage was first detected after 4 months, and almost all pots contained one or more phages againstRhizobium trifolii after 9 months. The presence of plants increased the titer of phages in some pots inoculated withR. trifolii, but had no effect on the number of different phages.The pots also contained phages against soil bacteria other than Rhizobium indicating that phages are spread readily and constitute a normal part of the life cycle of soil bacteria.The number of different phages isolated from the pots was affected by the strain of Rhizobium used as inoculum.     

Carotenoids in floral parts of a narcissus, a daffodil and a tulip

1. The qualitative and quantitative distribution of carotenoids of the floral parts of three monocotyledons, the narcissus Scarlet Elegance, the daffodil King Alfred and the tulip Golden Harvest, were studied. β-Carotene, lutein or epoxy-β-carotenes were usually the main pigments, depending on the floral part and on the flower. When β-carotene was the major pigment there were only small amounts of, or sometimes no, epoxycarotenes. 2. Anthers, stigmas and styles of the three flowers did not possess any specific carotenoids but in some cases contained appreciable amounts of epoxycarotenoids. The possibility that these take part in reproduction is discussed. 3. The generalization that yellow flowers contained large amounts of xanthophylls and only traces of carotenes, whereas deep-orange flowers seemed to be characterized by the presence of large amounts of one carotene, was not always the correct one. It is suggested that the floral parts are yellow or orange depending on what carotenoids are present, which is the major one and the amount of total carotenoids, and also on the presence of other non-carotenoid pigments. 4. Two new probable isomers of 5,6:5′,6′-diepoxy-β-carotene were isolated and found together in various floral parts of the tulip Golden Harvest.     

The ecology of a diatom community in a thermal stream

From 1964 to 1967 the annual variations in the relative abundance of diatoms in a thermal stream draining a hot spring were examined for changes in species diversity (H) and redundancy (R). Despite large seasonal changes in abundance and shifts in the species composition, the values in general did not deviate significantly from the calculated mean diversity value. This relative constancy of H was interpreted as an indication of diatom community stability. The species exhibited a characteristic pattern of seasonal abundance that is thought be to partially attributable to a light adaptation phenomenon. Three cores were obtained from the soft sediment of the spring and were analysed for diatom remains. The cores were dated by a pumice layer of known age and interpretations relative to the ontogeny of the diatom community added a significant time dimension to the yearly diatom analysis.     

Organic Matter Dynamics in a Tropical Gallery Forest in a Grassland Landscape

The high biodiversity of tropical forest streams depends on the strong input of organic matter, yet the leaf litter decomposition dynamics in these streams are not well understood. We assessed how seasonal litterfall affects leaf litter breakdown, density and biomass of aquatic invertebrates, and the microbial biomass and sporulation of aquatic hyphomycetes in a South American grassland ‘vereda’ landscape. Although litter production in the riparian area was low, leaf litter breakdown was high compared with other South American systems, with maximum values coinciding with the rainy season. Fungal biomass in decomposing leaves was high, but spore densities in water and sporulation rates were very low. Invertebrates were not abundant in litter bags, suggesting they play a minor role in leaf litter decomposition. Chironomids accounted for ~70 percent of all invertebrates; only 10 percent of non‐Chironomidae invertebrates were shredders. Therefore, fungi appear to be the drivers of leaf litter decomposition. Our results show that despite low productivity and relatively fast litter decomposition, organic matter accumulated in the stream and riparian area. This pattern was attributed to the wet/dry cycles in which leaves falling in the flat riparian zone remain undecomposed (during the dry period) and are massively transported to the riverbed (rainy season).     

Testing a flexible-receptor docking algorithm in a model binding site

Sampling receptor flexibility is challenging for database docking. We consider a method that treats multiple flexible regions of the binding site independently, recombining them to generate different discrete conformations. This algorithm scales linearly rather than exponentially with the receptor's degrees of freedom. The method was first evaluated for its ability to identify known ligands of a hydrophobic cavity mutant of T4 lysozyme (L99A). Some 200000 molecules of the Available Chemical Directory (ACD) were docked against an ensemble of cavity conformations. Surprisingly, the enrichment of known ligands from among a much larger number of decoys in the ACD was worse than simply docking to the apo conformation alone. Large decoys, accommodated in the larger cavity conformations sampled in the ensemble, were ranked better than known small ligands. The calculation was redone with an energy correction term that considered the cost of forming the larger cavity conformations. Enrichment improved, as did the balance between high-ranking large and small ligands. In a second retrospective test, the ACD was docked against a conformational ensemble of thymidylate synthase. Compared to docking against individual enzyme conformations, the flexible receptor docking approach improved enrichment of known ligands. Including a receptor conformational energy weighting term improved enrichment further. To test the method prospectively, the ACD database was docked against another cavity mutant of lysozyme (L99A/M102Q). A total of 18 new compounds predicted to bind this polar cavity and to change its conformation were tested experimentally; 14 were found to bind. The bound structures for seven ligands were determined by X-ray crystallography. The predicted geometries of these ligands all corresponded to the observed geometries to within 0.7A RMSD or better. Significant conformational changes of the cavity were observed in all seven complexes. In five structures, part of the observed accommodations were correctly predicted; in two structures, the receptor conformational changes were unanticipated and thus never sampled. These results suggest that although sampling receptor flexibility can lead to novel ligands that would have been missed when docking a rigid structure, it is also important to consider receptor conformational energy.     

Hypoluteoidism in a bitch

Hypoluteoidism is characterized by insufficient secretion of progesterone by the corpora lutea during pregnancy. The resulting failure to maintain progesterone concentration above a critical level presumably could lead to fetal resorbtion as well as frank abortion. This report concerns a 2.5-year-old Bernese Mountain dog with a history of two previous pregnancies ending in abortion around Day 50 of pregnancy. The bitch was initially presented 2 days after mating. Physical and gynecological examination revealed no abnormalities. The infectious causes of abortion in the bitch, Brucella canis and herpesvirus, were excluded using serology. On Day 26 after mating, ultrasonography confirmed a pregnancy with at least four living fetuses. During the remaining part of the pregnancy repeated transabdominal ultrasonography and plasma progesterone measurements, using a RIA, were performed. On Day 42, ultrasonography revealed living fetuses but plasma progesterone concentration had decreased to 8.3 nmol/L, which is just above the threshold necessary to maintain a vital pregnancy. Oral treatment with 0.1mg medroxyprogesterone acetate (MPA) per kg body weight, once daily, was started and continued until Day 58 in order to prevent abortion due to progesterone deficiency. The endogenous plasma progesterone concentration decreased further, but pregnancy was maintained. On Day 59 a cesarean section was performed because of dystocia and four living and one dead pup were delivered. One puppy had severe facial malformations and was euthanised. The premature decrease in plasma progesterone concentration while ultrasonography demonstrated that the fetuses were still alive, and the maintenance of pregnancy during administration of MPA, strongly support the diagnosis of hypoluteoidism.