两种缘毛类纤毛虫胞质Hsp70基因序列的克隆及其系统发育分析

克隆得到2种缘毛类纤毛虫——钟形钟虫(Vorticella campanula)和螅状独缩虫(Carchesium polypinum)的胞质Hsp70基因部分序列,长度均为438bp,编码146个氨基酸。以细菌为外类群,利用最大似然法和邻接法构建包括其他5种纤毛虫在内的共26个物种的Hsp70基因氨基酸序列系统发育树,其拓扑结构显示：V．campanula和C．polypinum聚在一起,并与另2种寡膜纲的嗜热四膜虫(Tetrahymena thermophila)及草履虫(Paramecium tetraurelia)聚为姊妹枝,提示了缘毛类纤毛虫为单系,且隶属于寡膜纲的系统发育地位。     

利用三种分子标记研究缘毛类纤毛虫的系统发育地位

为了探讨缘毛类纤毛虫的系统发育地位 ,利用RAPD方法得到了 9种缘毛类纤毛虫、 1种四膜虫和1种喇叭虫的 3个随机引物的电泳带谱 ;测定了 7种缘毛类纤毛虫rRNA基因中的间隔区 1(ITS1)和小亚基核糖体核糖核酸 (SSrRNA)基因序列 ,并构建了相应的系统树。在比较和分析RAPD、ITS1和SSrRNA基因序列在缘毛类纤毛虫系统发育研究中的适用范围的基础上 ,以SSrRNA基因序列为分子标记研究了缘毛类纤毛虫系统发育地位 ,结果表明 :①缘毛亚纲是单系的 ,作为寡膜纲中一个亚纲的分类地位是合理的 ;②缘毛类纤毛虫可能是寡膜纲中较高等的一个类群。     

西藏温泉两种中国新记录纤毛虫第一双小核草履虫和明布雷斯四膜虫的形态学和系统发育学研究

研究利用活体观察、蛋白银和氨银染色技术对采自西藏温泉的寡膜纲咽膜类纤毛虫第一双小核草履虫(Paramecium primaurelia)和膜口类纤毛虫明布雷斯四膜虫(Tetrahymena mimbres)进行了形态学研究, 首次描述了这两种纤毛虫细胞核器的形态和位置、纤毛图式和口膜的排布模式; 并且测定了SSU rDNA和COXⅠ标记基因序列, 基于这两种基因的系统发育树均支持P. primaurelia聚在草履虫P. aurelia复合种中, T. mimbres聚在四膜虫T. borealis类群中。两种纤毛虫均为中国新记录种, 且首次在高原温泉中发现, 不仅为西藏地区温泉原生动物生物资源的发掘提供新的方法和思路, 也为原生动物环境适应性研究提供基础资料。     

四膜虫—分子生物学研究的理想材料

四膜虫(Tetrahymena)与人们熟悉的草履虫一样,都是单细胞的原生动物,属纤毛虫纲,一般长50μm,宽30μm。细胞前端略细,后端变宽呈梨形,表面有15-25条毛带。口位于细胞的前端,内有三个小膜,口的边缘有一个波动膜,故称四膜虫。     

武汉东湖周丛原生动物六新种

本文报道武汉东湖周丛原生动物的6种纤毛虫新种:绿累枝虫Epistylis chlorelligerum sp. nov.、斗鞘居虫Vaginicola cupulata sp. nov.、弯鞘居虫Vaginicola curvata sp. nov.、褶鞘居虫Vaginicola plicata sp. nov.、大靴纤虫Cothurnia magna sp. nov.、多纹平鞘虫Platycola multistriata sp. nov.。       

三亚珊瑚礁水域纤毛虫种类组成和数量分布及与环境因子的关系

2004年8月通过对三亚珊瑚礁水域纤毛虫进行表、底层采集分析,共鉴定6纲14目33属58种浮游纤毛虫,其中旋毛纲41种,叶口纲6种,寡膜纲5种,叶咽纲4种,前口纲和伪纤毛纲各1种。在14个目中,以旋毛纲环毛亚纲砂壳目纤毛虫种类最多,达到31种。主要优势种为布氏拟铃虫 Tintinnopsis bütschlii、小拟铃虫 Tintinnopsis minuta、丁丁急游虫Strombidium tintinnodes和具沟急游虫Strombidium sulcatum等,底层纤毛虫数量和种类都较表层高,底、表层平均丰度分别为375个/L和346 个/L,表、底层纤毛虫种类差异明显,表层主要由浮游纤毛虫组成,以旋毛纲环毛亚纲砂壳目纤毛虫为主,急游目纤毛虫次之;而底层主要由缘毛目组成,如长圆靴纤虫 Cothurnia oblonga、透明鞘居虫Vaginicola crystalline、钟虫Vorticella sp.以及吸管目的壳吸管虫 Acineta sp. 等。结果显示,在活珊瑚覆盖率高的站位（S4,S7和S9）纤毛虫数量明显低于珊瑚覆盖率低或没有珊瑚覆盖的站位,这暗示了珊瑚对纤毛虫的摄食作用。典型对应分析结果表明,影响三亚湾海域纤毛虫分布的主要因素有Chla、颗粒悬浮物SS和活性磷,以及水体溶解有机碳含量。通过对纤毛虫数量与环境因子关系的分析表明,三亚湾珊瑚礁水域纤毛虫的数量与叶绿素呈明显的正相关性。     

五种缘毛类纤毛虫遗传关系的ISSR研究

应用ISSR分子标记揭示了5种缘毛类纤毛虫(Carchesium polypinum,Epistylis chrysemydis,E.plicatilis,E.urceolata和Vorticella campanula)的遗传关系.从34个引物中筛选到13个多态性高的引物进行研究.得到的遗传距离(0.666 7～1.000 0)显示ISSR技术具有较高的分辨率.依据构建的UPGMA聚类树,V.campanula首先和其他种类分开;C.polypinum和E.chrysemydis聚在了一起;在3种Epistylis纤毛虫中,E.plicatilis和E.urceolata聚在了一起.对比由核糖体小亚基RNA基因序列构建的系统发育树,发现:1)ISSR引物在缘毛类纤毛虫基因组中可以得到多态扩增;2)C.polypinum与Epistylis的关系近于V.campanula,在缘毛类纤毛虫分类中,单生或群居是重要的系统发育特征;3)E.plicatilis和E.urceolata的关系近于E.chrysemydis.在Epistylis属纤毛虫中,柄的中空与否是一个有用的系统发育和分类特征.本研究表明ISSR方法在纤毛虫相近和相似种遗传关系研究中是一种新的有用方法.     

低盐度围隔调控环境浮游纤毛虫群落结构与动态

为了解施肥与水质调控对养殖水体中原生动物的影响,2008年6-10月,对低盐度围隔调控环境中浮游纤毛虫种群结构及动态变化进行了研究.通过活体观察和标本固定染色法共检测到浮游纤毛虫48种,分属于3纲11目37属,其中寡毛目纤毛虫种类8种;缘毛目7种,腹毛目和盾纤目均为6种;优势种多为富营养化水体中或耐污性种类,如圆筒状拟铃壳虫(Tintinnopsis cylindrata)、球形急游虫(Stranbidium globosaneum)、海洋帆口虫(Pleuronema marinum)、蚤状中缢虫(Mesodinium pulex)、毛板壳虫(Coleps hirtus)、瓜形膜袋虫(Cyclidium citrullus)等.围隔不同施肥处理,对纤毛虫的群落组成与动态变化影响显著,试验期间,围隔中纤毛虫种类平均值最高为9种,最低为4种;密度平均值最高为112.30cells·ml-1,最低为19.50 cells·ml-1;10个围隔中纤毛虫种类平均分别为6～7种,密度平均为52.56 cells·ml-1;施有机肥培藻的围隔,优势种始终是嗜污性较强的纤毛虫.纤毛虫动态与浮游藻类动态变化密切相关,二者的密度变化特点为前期和后期低,中期较高;但多样性的变化规律相反,纤毛虫的多样性表现为前期和后期低,中期较高,藻类的多样性表现为前期和后期高,中期较低.     

活性污泥微型动物种群动态与水质净化效能的关系

2001～2002年,系统地研究了高碑店污水厂四系列曝气池活性污泥中的微型动物种群动态与水质变化的相互关系。在该污水处理系统的四系列曝气池内所发现的122种原生动物中,褶累枝虫(Epistylis plicatilis)、沟钟虫(Vorticella convallaria)、有肋檐纤虫(Aspidisca costata)和半圆表壳虫(Arcella hemisphaerica)是经常大量出现的原生动物种类。冬季褶累枝虫占绝对优势。5月和6月,有肋檐纤虫为活性污泥动物群落的优势种群。纤毛虫和后口动物总数越多,污水净化效能越强,污泥的沉降性越好。游泳类纤毛虫总数与出水BOD5值呈正相关,固着类纤毛虫的多样性值与出水的总氮呈正相关,爬行类纤毛虫的多样性值与出水的硝态氮和出水总磷都呈正相关,与厌氧段总磷呈负相关。研究结果表明,微型动物种群动态规律与污水处理效果关系密切,该厂污水处理系统中四系列的硝化和反硝化显著,活性污泥的运转效能良好,各种主要污染物得到有效净化[动物学报49(6)：775～786,2003]。     

对虾养殖池塘底质修复技术对原生动物群落结构的影响

在对虾养殖池塘水体中共检测到原生动物86种,其中纤毛虫48种;鞭毛虫25种,肉足虫13种.原生动物优势种主要由一些运动能力相对较弱或固着生长的种类组成,如褐砂壳虫(Difflugia avellana)、瓜形膜袋虫(Cyclidium citrullus)、透明鞘居虫(Vaginicola crystalline)、多态喇叭虫(Stentor polymorphrus)和钟虫(Vorticella sp.)等,这些原生动物有以腐质和藻类为食、耐污性较强的特点.结果表明:在养殖初期,使用底质修复技术的试验池塘原生动物群落结构恢复比对照塘快,PFU群集的原生动物种类数和密度比对照塘多,水质比对照塘好,嗜污性相对较强的一些纤毛虫如尾草履虫(Paramecium caudaium)、拟瘦尾虫(Paruroleptus spp.)等比对照塘出现晚.在随后的养殖过程中,使用底质修复技术的试验塘原生动物群落结构比对照塘稳定,原生动物种类数和密度起伏小,pH值、透明度变化幅度也小于对照池塘,没有发生病害,水质较对照塘好.     

Recent advances in the study of Kaposi's sarcoma-associated herpesvirus replication and pathogenesis

It has now been over twenty years since a novel herpesviral genome was identified in Kaposi's sarcoma biopsies. Since then, the cumulative research effort by molecular biologists, virologists, clinicians, and epidemiologists alike has led to the extensive characterization of this tumor virus, Kaposi's sarcoma-associated herpesvirus(KSHV; also known as human herpesvirus 8(HHV-8)), and its associated diseases. Here we review the current knowledge of KSHV biology and pathogenesis, with a particular emphasis on new and exciting advances in the field of epigenetics. We also discuss the development and practicality of various cell culture and animal model systems to study KSHV replication and pathogenesis.     

A Unique Protease Cleavage Site Predicted in the Spike Protein of the Novel Pneumonia Coronavirus (2019-nCoV) Potentially Related to Viral Transmissibility

正Dear Editor,In December 2019, a novel human coronavirus caused an epidemic of severe pneumonia(Coronavirus Disease 2019,COVID-19) in Wuhan, Hubei, China(Wu et al. 2020; Zhu et al. 2020). So far, this virus has spread to all areas of China and even to other countries. The epidemic has caused 67,102 confirmed infections with 1526 fatal cases     

Curcuminoids as inhibitors of thioredoxin reductase: A receptor based pharmacophore study with distance mapping of the active site

Curcumin is the yellow pigment of turmeric that interacts irreversibly forming an adduct with thioredoxin reductase (TrxR), an enzyme responsible for redox control of cell and defence against oxidative stress. Docking at both the active sites of TrxR was performed to compare the potency of three naturally occurring curcuminoids, namely curcumin, demethoxy curcumin and bis-demethoxy curcumin. Results show that active sites of TrxR occur at the junction of E and F chains. Volume and area of both cavities is predicted. It has been concluded by distance mapping of the most active conformations that Se atom of catalytic residue SeCYS498, is at a distance of 3.56 from C13 of demethoxy curcumin at the E chain active site, whereas C13 carbon atom forms adduct with Se atom of SeCys 498. We report that at least one methoxy group in curcuminoids is necessary for interation with catalytic residues of thioredoxin. Pharmacophore of both active sites of the TrxR receptor for curcumin and demethoxy curcumin molecules has been drawn and proposed for design and synthesis of most probable potent antiproliferative synthetic drugs.     

The structure, reproduction and taxonomy of Vidalia and Osmundaria (Rhodophyta, Rhodomelaceae)

Comprises species occurring mostly in subtidal habitats in tropical, subtropical and warm-temperate areas of the world. An analysis of the type species, V. spiralis (Sonder) Lamouroux ex J. Agardh, a species from Australia, establishes basic characters for distinguishing species in the genus. These characters are (1) branching patterns of thalli, (2) flat blades that may be spiralled on their axis, (3) width of the blade, (4) primary or secondary derivation of sterile and fertile branchlets and (5) position of sterile and fertile branchlets on the thalli. Application of the latter two characters provides an important basic method for separation of species into three major groups. Osmundaria , a genus known only in southern Australia, was studied in relation to Vidalia , and its separation from the Vidalia assemblage is not accepted. Species of Vidalia therefore are transferred to the older genus name, Osmundaria. Two new species, Osmundaria papenfussii and Osmundaria oliveae are described from Natal. Confusion in the usage of the epithet, Vidalia fimbriala Brown ex Turner has been clarified, and Vidalia gregaria Falkenberg, described as an epiphyte on Osmundaria pro/ifera Lamouroux, is revealed to be young branches of the host, Osmundaria prolifera.     

New or rare chromosome counts in Artemisia L. (Asteraceae, Anthemideae) and related genera from Kazakhstan

Fifteen chromosome counts of six Artemisia taxa and one species of each of the genera Brachanthemum, Hippolytia, Kaschgaria, Lepidolopsis and Turaniphytum are reported from Kazakhstan. Three of them are new reports, two are not consistent with previous counts and the remainder are confirmations of very scarce (one to four) earlier records. All the populations studied have the same basic chromosome number, x = 9, with ploidy levels ranging from 2x to 6x. Some correlations between ploidy level, morphological characters and distribution are noted.