Possible origin of stromatactis-like cavities in Upper Jurassic sediments from the Wielkanoc quarry near Gołcza (Kraków–Częstochowa Upland,southern Poland)—experimental studies

Isolated stromatactis-like cavities were found in a microbial-sponge buildup exposed in the Wielkanoc quarry (eastern part of the Kraków-Częstochowa Upland). The cavities are filled with several generations of carbonate cements and with internal sediments. The top surfaces of internal sediments are flat or wavy, whereas the roofs of cavities are arcuate. The origin of cavities from the Kraków-Częstochowa Upland is difficult to constrain. It seems that the stromatactis-like cavities from the Wielkanoc quarry resulted, at least partly, from remodeling of open spaces left after dissolution of corals in incompletely lithified sediment. Dissolution of corals disturbed the primary stress field within the carbonate buildup and generated the secondary stress characterized by the appearance of compressional forces in the walls of cavities and tensional forces in their roofs. Thus, the lack of support of sediments over roofs of cavities after dissolution of corals resulted in their instability and collapse triggered by vibrations caused by various factors. One of such triggers might have been the rejuvenation of the Kraków-Lubliniec Fault Zone in the Late Jurassic or the collapse of reticular framework within the buildup. The material falling down from the roofs was deposited at the bottoms of cavities as an internal sediment. Results of experimental studies demonstrate that the arcuate shapes of the roof surfaces of cavities are related to compressional stress in the walls and tensional stress in their roofs.     

Origin and evolution of an Upper Jurassic complex of carbonate buildups from Zegarowe Rocks (Kraków–Wieluń Upland, Poland)

The Upper Jurassic complex of Zegarowe Rocks is situated on the Kraków–Wieluń Upland in southern Poland. The complex is dominated by massive limestones representing carbonate buildups. The successive stages of carbonate buildup development include: colonisation, aggradational growth and progradation phases. In the colonisation phase, on top of loose peloidal-ooid sands micritic peloidal thrombolites developed. Peloidal and agglutinated thrombolites and stromatolites proliferated during the aggradational growth phase, whereas the progradation phase was characterised by shallowing and related development of agglutinated stromatolites with coprolites. The latter were the effect of periodical stabilisation of detrital sediments by microbial mats. The Zegarowe Rocks complex developed upon an elevation of the Late Jurassic stable northern shelf of the Tethys. This elevation was formed due to local decrease in subsidence rate, induced by the presence of a Palaeozoic granitoid intrusion in the shelf substratum. The carbonate buildups of the Zegarowe Rocks complex, initially developing as sediment-starved mounds upon fault-controlled intraplatform highs under strongly restricted background sedimentation rate, were replaced by agglutinated microbial reefs.     

Occurrence of Didymella ascospores in western and southern Poland in 2004–2006

The concentration of airborne Didymella spores has been investigated at two monitoring sites situated along the west–south transect in Poland (Szczecin, Kraków), i.e. from a height of 100 to 219 m, respectively, above sea level. The aerobiological monitoring of fungal spores was performed by means of two Lanzoni volumetric spore traps. The high Didymella spore numbers were observed at both cities in June, July and August. Statistically significant correlations have been found mainly between the Didymella spore concentrations in the air and the minimum air temperature and relative air humidity. The spore count of Didymella is determined by the diversity of local flora and weather conditions, especially by the relative air humidity. The identification of factors that influence and shape spore concentrations may significantly improve the current methods of allergy prevention.     

Effect of river straightening on the hydrochemical properties of floodplain lakes: Observations from the Łyna and Drwęca Rivers,N Poland

The aim of the paper is to present two independent approaches to the issue of preservation of former meander loops based on examples of hydrotechnical works undertaken along meandering sections of the Drw?ca and ?yna Rivers (N Poland) in the 20th century. Except for significant changes in morphology of both rivers (shortened lengths, decrease in sinuosities and increase in channel slopes), the direct effect of their straightening is numerous cut-off channels. Hydrotechnical works performed along the middle section of the ?yna River maintained the connections between the active river channel and downstream arms of former meander loops. Thanks to that connection, the new water bodies successfully function as biogeochemical filters in the river valley and create favorable conditions for biodiversity. The consequence of the channelization of the Drw?ca River is numerous cut-offs separated from the river channel and characterized by advanced processes of eutrophication.The water quality data collected within the period of 2004–2006 showed significant consequences of the performed works for the man-made ecosystems. The comparison of water quality in semi-lotic and lentic cut-offs in relation to water in their parent rivers showed statistical differences. Significantly high concentrations of orthophosphates, total phosphorus and sulphates as well as the lowest concentrations of nitrates characterized lentic environments along the Drw?ca River. Besides hydrological connectivity, an important factor responsible for transformation processes of the man-made ecosystems is hydrological regime. It influences ecological integrity in floodplain ecosystems during high water levels and largely controls their chemical characteristics and aeration. Flood disturbances for lentic water bodies may renew connectivity and reset succession, can hold up the trend towards terrestrialization and disappearance of man-made water bodies in the floodplain. However, in light of the conducted studies, the maintenance of the connection between the downstream arm of the cut-off channel and the river is highly recommended.     

The effect of stand age on throughfall chemistry in spruce stands in the Potok Dupniañski catchment in the Silesian Beskid Mountains, southern Poland

The chemical composition of throughfall depends on the age of the Norway spruce (Picea abies Karst) stands and season of the year. The pH of throughfall decreased and the amount of hydrogen ion in throughfall deposited to the soil increased with increasing age of spruce stands, especially in the winter season. Concentrations of K+, H+, SO4(2-), Mn2+, and NH4(+) in throughfall were higher than bulk precipitation for the whole year and K+, H+, and Mn2+ concentrations were higher in throughfall in winter and the growing season. This indicates that these ions were washed out or washed from the surface of needles and/or the bark, and that NO3(-), NH4(+), Ca2+, Mg2+, Fe2+, and Zn2+ were absorbed in the canopy. The effect of high nitrogen deposition, above critical loads, and an increase in the amount of sulfur and in the sum of the strong acids (S-SO4(2-) and N-NO3(-)) that reached the soil with throughfall may have implications for the vitality of spruce stands, especially in older age classes. The application of Principal Component Analysis (PCA) has led to identification of five factors responsible for the data structure ("mineral dust", "acidic emissions", "heavy metals-dust particles", "ammonium [NH4(+)]", and "H+"). They explain more than 60% of the total variance system. The strong positive correlation between stand age class and ionic concentrations in throughfall occurs for all year and the winter period for ions within the following categories: "acidic emissions", SO4(2-) + NO3(-); "heavy metals-dust particles", Fe2+ + Mn2+ + Zn2+; "mineral dust", Na+ + K+ + Ca2+ + Mg2+; "NH4(+)"; and "H+". The strength of the relationship decreases in the growing period, probably due to processes occurring in the canopy (adsorption, leaching, etc.).     

The Origin of Patterning Systems in Bilateria——Insights from the Hox and ParaHox Genes in Acoelomorpha

Hox and ParaHox genes constitute two families of developmental regulators that pattern the Anterior-Posterior body axis in all bilaterians.The members of these two groups of genes are usually arranged in genomic clusters and work in a coordinated fashion,both in space and in time. While the mechanistic aspects of their action are relatively well known,it is still unclear how these systems evolved. For instance,we still need a proper model of how the Hox and ParaHox clusters were assembled over time.This problem is due to the shortage of information on gene complements for many taxa (mainly basal metazoans) and the lack of a consensus phylogenetic model of animal relationships to which we can relate our new findings.Recently, several studies have shown that the Acoelomorpha most probably represent the first offshoot of the Bilateria. This finding has prompted us,and others, to study the Hox and ParaHox complements in these animals,as well as their activity during development.In this review,we analyze how the current knowledge of Hox and ParaHox genes in the Acoelomorpha is shaping our view of bilaterian evolution.     

Tetracycline-resistant bacteria as indicators of antimicrobial resistance in protected waters—The example of the Drwęca River Nature Reserve (Poland)

The objective of this study was to determine the suitability of Tet^R tetracycline-resistant bacteria as potential indicators of drug resistance, a parameter of the microbiological quality of river waters in natural reserves which are threatened by man-made pollution. The microbiological assays covered a 15-km long section of the upper reach of the Drw?ca River (Poland), a part of the European Ecological “Natura 2000” Network of nature protected areas. The quality of the investigated ecosystem was affected by surface runoffs from the river's agricultural catchment as well as outflows from three fish farms. The counts of Tet^R bacteria, incubated at 14 °C and 28 °C on TSA medium with sheep blood and tetracycline, were determined in river water samples. The highest counts of both bacterial groups were determined in samples collected from sites behind fish farms. A statistical analysis of the abundance of Tet^R14 °C and Tet^R28 °C bacteria revealed significant differences in the size of Tet^R28 °C populations at the studied sampling sites (p = 0.0011), which is why hemolytic bacteria of this group (HemTet^R28 °C) were selected for further investigations. The predominant strains in the group of 86 HemTet^R28 °C isolates obtained by 16S rRNA gene sequencing were Pseudomonas fluorescens (42 isolates) and Aeromonas hydrophila (28 isolates). Analyses of the identified HemTet^R28 °C strains demonstrated MIC ≥256 μg/ml in more than 50% isolates. The MAR index of HemTet^R28 °C was in the range of 0.67 at the control site to 1 at sites behind fish farms. The results suggest that tetracycline-resistant bacteria, in particular HemTet^R28 °C, are a reliable indicator of antimicrobial resistance and the microbial quality of surface waters polluted due to human activity. The above can be attributed to several factors: (I) the highest percentage share of HemTet^R28 °C among HPC28 °C was noted at sites behind fish farms, (II) tetracycline-resistant bacteria quickly respond to environmental changes, as demonstrated by the high level of resistance to tetracycline and a very high MAR index, and (III) genera/species that are easy to culture under laboratory conditions dominate in the qualitative and quantitative composition of the studied bacteria.     

Cladogenesis and replacement in the fossil record of Microsyopidae (?Primates) from the southern Bighorn Basin,Wyoming

The early Eocene of the southern Bighorn Basin, Wyoming, is notable for its nearly continuous record of mammalian fossils. Microsyopinae (?Primates) is one of several lineages that shows evidence of evolutionary change associated with an interval referred to as Biohorizon A. Arctodontomys wilsoni is replaced by a larger species, Arctodontomys nuptus, during the biohorizon interval in what is likely an immigration/emigration or immigration/local extinction event. The latter is then superseded by Microsyops angustidens after the end of the Biohorizon A interval. Although this pattern has been understood for some time, denser sampling has led to the identification of a specimen intermediate in morphology between A. nuptus and M. angustidens, located stratigraphically as the latter is appearing. Because specimens of A. nuptus have been recovered approximately 60 m above the appearance of M. angustidens, it is clear that A. nuptus did not suffer pseudoextinction. Instead, evidence suggests that M. angustidens branched off from a population of A. nuptus, but the latter species persisted. This represents possible evidence of cladogenesis, which has rarely been directly documented in the fossil record. The improved understanding of both evolutionary transitions with better sampling highlights the problem of interpreting gaps in the fossil record as punctuations.     

Wintering waterbird assemblages in the central part of the Gulf of Gabès in southern Tunisia

Although the Gulf of Gabès is recognised as an Important Bird Area, several aspects of the ecology of waterbirds inhabiting this area still need to be investigated. We observed how waterbird foraging guilds varied among habitats. In total, 49 species belonging to 16 families were recorded. Winter visitors accounted for 73% of counts. The avifauna was dominated by shorebirds (52% of records), followed by large wading birds (25%), open-water birds (18%) and waterfowl (5%). However, the structure of local waterbird communities and their composition in terms of foraging guilds varied according to habitat type. The bird communities of sandy beaches were dominated by open-water birds, whereas large mudflats were dominated by shorebirds, and wadi estuaries showed a more even representation of foraging guilds. Locally rare species had narrow distributions, whereas locally abundant species were found widely within the gulf. For four species the 1% population level criterion of the Ramsar Convention was exceeded. Overall, our results show that the Gulf of Gabès hosts important numbers of waterbirds with different ecological requirements, which confirms the importance of this gulf as a wintering area for Palearctic waterbirds.     

Origin and evolution of the Amyrel gene in the α-amylase multigene family of Diptera

Alpha-amylase genes often form multigene families in living organisms. In Diptera, a remote paralog, Amyrel, had been discovered in Drosophila, where this gene is currently used as a population and phylogenetic marker. The putative encoded protein has about 40% divergence with the classical amylases. We have searched the presence of the paralog in other families of Diptera to track its origin and understand its evolution. Amyrel was detected in a number of families of Muscomorpha (Brachycera-Cyclorrapha), suggesting an origin much older than previously thought. It has not been found elsewhere to date, and it is absent from the Anopheles gambiae genome. The intron–exon structures of the genes found so far suggest that the ancestral gene (before the duplication which gave rise to Amyrel) had two introns, and that subsequent, repeated and independent loss of one or both introns occurred in some Muscomorpha families. It seems that the Amyrel protein has experienced specific amino acid substitutions in regions generally well conserved in amylases, raising the possibility of peculiar, functional adaptations of this protein.     

Seasonal variations in the conception rate of beef cattle in the seasonal—equatorial climate of southern nigeria

Seasonal variations in the frequency of conceptions were analysed from the records of 8,971 beef calves born over a period of ten years (1959–1968) in the Southern Guinea Savannah of Nigeria. Mean annual and monthly conception rates were 72 and 6%, respectively. Highly significant changes in conception rates were observed: the highest number of conceptions occurred in April (7.3%) and the lowest in October (4.4%). The cubic function of the curve depicting the monthly conception rate was highly significant (p < 0.001) and parallelled the change in photoperiod (r = +0.39, p < 0.01). Conception rate was not related to either temperature or precipitation. The evidence suggests a photoperiodic influence on conception rates.

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Zusammenfassung Saisonale Schwankungen in der Konzeptionsrate von Fleischrindern der Guineasavanne Südnigerias wurden anhand von 8.971 Kalbungen aus zehn Jahren (1959–1968) untersucht. Die durchschnittlichen jährlichen und monatlichen Konzeptionsraten betrugen 72 beziehungsweise 6%; jedoch wurden hochsignifikante Abweichungen (p < 0.001) von dem monatlichen Mittelwert festgestellt: die höchste Konzeptionsrate wurde mit 7,3% für April, die niedrigste mit 4,4% für Oktober errechnet. Die mathematische Funktion der Konzeptionsrate folgt einer Sinuskurve, welche der monatlichen Veränderung der Tageslichtlänge parallel läuft (r = +0,39, p < 0.01). Die Konzeptionsrate war nicht mit der Durchschnittstemperatur oder den Niederschlägen korreliert. Diese Ergebnisse lassen vermuten, dass die saisonalen Schwankungen in der Konzeptionsrate zumindest teilweise auf photoperiodische Veränderungen zurückzuführen sind.

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Resume Les variations saisonnières du taux de fécondité de bovins de la savanne du sud de la Guinée (Nigéria) ont été étudiées sur la base de 8971 mises bas ayant eu lieu durant une période de 10 ans. Le taux de fécondité moyen fut de 72% pour l'année et de 6% pour chaque mois. On constate pourtant des différences significatives entre les différents mois: le taux le plus élevé se trouve en avril (7,3%) et le plus bas en octobre (4,4%). La fonction du troisième degré du taux de fécondité est hautement significative (p < 0,001). Elle suit une courbe sinusöidale parallèle à celle de la longueur du jour (r = +0,39, p < 0,01). Il n'y a pas de relation entre le nombre de conceptions et la température ou les précipitations. Par conséquent, seul le photopériodisme semble influencer le nombre des conceptions.

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The permission of the Western Nigeria Development Corporation to analyse and publish their breeding records is gratefully acknowledged.     

Trawl fishery resources in the “southern waters” of Japan

Settlement-stage larvae of the coral reef fishes Ostorhinchus doederleini (Apogonidae) and Pomacentrus coelestis (Pomacentridae) prefer the odor of their settlement reef to that of other nearby reefs. It was unknown whether these olfactory preferences are temporally stable or the result of recent olfactory experience. Ostorhinchus doederleini and P. coelestis larvae were held in aquaria and exposed to water from either their settlement reef or a neighboring reef for 5–9 days and their olfactory preference was tested. We show that exposure to water from another reef did not influence olfactory preference. Ostorhinchus doederleini olfactory preference declined slightly over time whereas P. coelestis preference was gradually lost after 2–3 days in captivity. Neither species switched their preference to the new reef odor. While we cannot determine conclusively the time window of odor learning, imprinting at or shortly after birth is logical and has been demonstrated in other fish species.     

The long-range transport of Pinaceae pollen: an example in Kraków (southern Poland)

High Pinaceae pollen concentrations in the air and on the surface of puddles before the main pollen season started were observed in Kraków (southern Poland) in May 2013. The paper presents the results of detailed studies of the composition and source of the “yellow rain” in 2013, and as a comparison, the Pinaceae pollen concentrations and samples collected from the ground surface in 2014 were considered. The air samples were collected using the volumetric method (Hirst-type device), while pollen grains sampled from the ground surface were processed using a modified Erdtman acetolysis method. Finally, all samples were studied using a light microscope. In 2013, the period of higher Abies, Picea and Pinus pollen concentrations was observed from the 5 to 12 of May, earlier than the main pollen season occurred. The presence of rainfall on the 12 and 13 of May 2013 caused the pollen deposition on the ground surface, where the prevalence of Pinaceae pollen was found. The synoptic situation and the analysis of the back-trajectories and air mass advection at the beginning of May 2013 indicated that Pinaceae pollen grains could have been transported from Ukraine, Romania, Hungary and Slovakia. In contrast, Pinaceae pollen grains deposited on the ground surface as a “yellow” film in May 2014, originated from local sources.     

The primary production of phytoplankton in the restored Maltañski Reservoir in Poland

Patterns in composition, abundance and diversity of the annelid fauna (Polychaeta and Oligochaeta) in 22 sandy beaches in Iceland were explored. The effect of exposure on annelid distribution was studied. A total of 5651 annelids were recorded from 160 core samples. Oligochaetes (chiefly Tubificidae) dominated the annelid assemblage whereas polychaetes represented a minor fraction. Polychaetes were relatively more abundant in exposed than in sheltered beaches, contrary to oligochaetes. Meiofaunal polychaete species were also more abundant in exposed than in sheltered beaches. Southwest beaches seemed more diverse in annelid species than northern ones. Annelid diversity did not differ between sheltered and exposed sites, but higher diversity was attained in fine sands at sheltered areas. Cluster analysis revealed large differences between beaches in the annelid community composition. The general patterns found suggest that beach exposure is a major factor conditioning macro- and meiofaunal polychaete and oligochaete distribution along the Icelandic coast.     

Origin of Caucasoid-Specific Mitochondrial DNA Lineages in the Ethnic Groups of the Altai–Sayan Region

The data on sequence variation in the first hypervariable segment (HVSI) of human mitochondrial DNA (mtDNA) representing Caucasoid mtDNA lineages in the gene pools of Altaians and Khakassians are presented. Identification of the subgroups of Caucasoid mtDNA lineages found in the gene pools of the ethnic groups of the Altai–Sayan region and the adjacent territories, Altaians, Khakassians, Tuvinians, Buryats, and Yakuts was carried out. All Caucasoid mtDNA lineages belonged to groups H, HV1, J*, J1, J1b1, T1, T4, U1a, U2, U3, U4, U5a1, I, X and N1a. Taking into consideration possible contribution of southern Caucasoid and eastern European components to the formation of the anthropological type of Altai–Sayan ethnic groups, distribution of the revealed Caucasoid mtDNA lineages among the ethnic groups of the Central Asia, Western Asia, Caucasus, and Eastern Europe was examined. The applied approach permitted identification of 60% of mtDNA types the majority of which had southern Caucasoid origin. Less than 10% of mtDNA types were of eastern European origin. The gene pools of Altaians and Khakassians displayed the presence of autochthonous components represented by mtDNA types from subgroups U2 and U4.     

Dynamics of water usage in Haloxylon ammodendron in the southern edge of the Gurbantünggüt Desert

植物的水分来源是荒漠地区植物水分关系研究的重要方面, 有助于理解荒漠植物对干旱环境的适应。为了研究古尔班通古特沙漠主要建群种梭梭(Haloxylon ammodendron)生长季的水分利用动态, 以及其对发生在不同时期相似量级降水脉冲的响应, 利用稳定性同位素技术测量了梭梭小枝木质部水、降水、0-300 cm不同土层的土壤水和地下水的δ ¹⁸O值。水源依据深度划分为4个: 浅层土壤水(0-40 cm), 中层土壤水(40-100 cm), 深层土壤水(100-300 cm)和地下水。然后, 应用IsoSource模型计算了梭梭对潜在水源的利用比例。结果表明: 4月份, 梭梭主要利用浅层土壤水, 利用比例为62%-95%; 5-9月份梭梭主要利用地下水, 利用比例为68%-100%。梭梭对不同时期发生的两场相似量级的降水具有不同程度的响应。5月22日, 6.7 mm降水后第1天, 梭梭对土壤水的吸收达到最大值, 由降水前的9.8%增长为降水后的40.4%, 同时降低了对地下水的吸收, 由降水前的83%-98%下降为42%-81%。8月31日7 mm降水后, 梭梭对土壤水的吸收没有增加, 仍然保持对地下水的高比例利用, 达71%-98%。低的土壤含水量可能抑制了表层根系的活性, 导致梭梭对降水不敏感。由冬季融雪和春季降水补给的浅层土壤水和地下水是梭梭种群可利用的两个重要水源。梭梭的水分利用动态反映了其对干旱环境的适应。     

Did Cyclic Metaphosphates Have a Role in the Origin of Life?

How life began still eludes science life, the initial progenote in the context presented herein, being a chemical aggregate of primordial inorganic and organic molecules capable of self-replication and evolution into ever increasingly complex forms and functions.

Presented is a hypothesis that a mineral scaffold generated by geological processes and containing polymerized phosphate units was present in primordial seas that provided the initiating factor responsible for the sequestration and organization of primordial life’s constituents. Unlike previous hypotheses proposing phosphates as the essential initiating factor, the key phosphate described here is not a polynucleotide or just any condensed phosphate but a large (in the range of at least 1 kilo-phosphate subunits), water soluble, cyclic metaphosphate, which is a closed loop chain of polymerized inorganic phosphate residues containing only phosphate middle groups. The chain forms an intrinsic 4-phosphate helix analogous to its structure in Na Kurrol’s salt, and as with DNA, very large metaphosphates may fold into hairpin structures. Using a Holliday-junction-like scrambling mechanism, also analogous to DNA, rings may be manipulated (increased, decreased, exchanged) easily with little to no need for additional energy, the reaction being essentially an isomerization.

A literature review is presented describing findings that support the above hypothesis. Reviewed is condensed phosphate inorganic chemistry including its geological origins, biological occurrence, enzymes and their genetics through eukaryotes, polyphosphate functions, circular polynucleotides and the role of the Holliday junction, previous biogenesis hypotheses, and an Eoarchean Era timeline.