Genetic and Molecular Insights into the Enhancement of Rice Yield Potential

Rice is one of the most important global food crops and a primary source of calories for more than half of the world's population. Rice production increased steadily during the green revolution era primarily as a result of introducing high-yielding rice varieties. World rice production increased at a rate of 2.3–2.5% per year during 1970s and 1980s, but this rate of growth was only 1.5% per year during the 1990s. The yield growth rate for rice has further declined during the first decade of this century. However, the populations in the major rice-consuming countries continue to grow at a rate of more than 1.5% per year. According to various estimates, world rice production must increase at the rate of 2 million tons per year. To meet this challenge, rice varieties with higher yield potential and greater yield stability are needed. Various strategies for increasing the yield potential of rice include; (1) conventional hybridization and selection, (2) F₁ hybrid breeding, (3) modification of plant architecture, and (4) enhancement of photosynthesis. Many genes and QTLs have recently been identified which will assist with rice breeding objectives.     

中国科学家在解析独脚金内酯调控水稻株型的分子机制研究中取得突破性进展

阐明植物激素作用的分子机理一直是植物学研究的前沿和热点。如何调控作物的株型等重要农艺性状是绿色革命的核心内容。最近, 中国科学家在解析新型植物激素独脚金内酯的信号途径和阐明独脚金内酯调控水稻(Oryza sativa)株型的分子机制等方面所取得的重大原创成果入选“2014年度中国科学十大进展”。     

Plastid biotechnology for crop production: present status and future perspectives

The world population is expected to reach an estimated 9.2 billion by 2050. Therefore, food production globally has to increase by 70% in order to feed the world, while total arable land, which has reached its maximal utilization, may even decrease. Moreover, climate change adds yet another challenge to global food security. In order to feed the world in 2050, biotechnological advances in modern agriculture are essential. Plant genetic engineering, which has created a new wave of global crop production after the first green revolution, will continue to play an important role in modern agriculture to meet these challenges. Plastid genetic engineering, with several unique advantages including transgene containment, has made significant progress in the last two decades in various biotechnology applications including development of crops with high levels of resistance to insects, bacterial, fungal and viral diseases, different types of herbicides, drought, salt and cold tolerance, cytoplasmic male sterility, metabolic engineering, phytoremediation of toxic metals and production of many vaccine antigens, biopharmaceuticals and biofuels. However, useful traits should be engineered via chloroplast genomes of several major crops. This review provides insight into the current state of the art of plastid engineering in relation to agricultural production, especially for engineering agronomic traits. Understanding the bottleneck of this technology and challenges for improvement of major crops in a changing climate are discussed.     

Plant genomics in Africa: present and prospects

Plants are the world’s most consumed goods. They are of high economic value and bring many health benefits. In most countries in Africa, the supply and quality of food will rise to meet the growing population’s increasing demand. Genomics and other biotechnology tools offer the opportunity to improve subsistence crops and medicinal herbs in the continent. Significant advances have been made in plant genomics, which have enhanced our knowledge of the molecular processes underlying both plant quality and yield. The sequencing of complex genomes of African plant species, facilitated by the continuously evolving next-generation sequencing technologies and advanced bioinformatics approaches, has provided new opportunities for crop improvement. This review summarizes the achievements of genome sequencing projects of endemic African plants in the last two decades. We also present perspectives and challenges for future plant genomic studies that will accelerate important plant breeding programs for African communities. These challenges include a lack of basic facilities, a lack of sequencing and bioinformatics facilities, and a lack of skills to design genomics studies. However, it is imperative to state that African countries have become key players in the plant genome revolution and genome derived-biotechnology. Therefore, African governments should invest in public plant genomics research and applications, establish bioinformatics platforms and training programs, and stimulate university and industry partnerships to fully deploy plant genomics, particularly in the fields of agriculture and medicine.     

Overview of the current status of genetically modified plants in Europe as compared to the USA

Genetically modified crops have been tested in 1,726 experimental releases in the EU member states and in 7,815 experimental releases in the USA. The global commercial cultivation area of genetically modified crops is likely to reach 50 million hectares in 2001, however, the commercial production of genetically modified crops in the EU amounts to only a few thousand hectares and accounts for only some 0.03% of the world production. A significant gap exists between the more than fifty genetically modified crop species already permitted to be cultivated and to be placed on the market in the USA, Canada and other countries and the five genetically modified crop species permitted for the same use in the EU member states, which are still pending inclusion in the Common Catalogue of agricultural plant species. The further development of the "green gene technology" in the EU will be a matter of public acceptance and administrative legislation.     

Novel and potential application of cryopreservation to plant genetic transformation

The world population now is 6.7 billion and is predicted to reach 9 billion by 2050. Such a rapid growing population has tremendously increased the challenge for food security. Obviously, it is impossible for traditional agriculture to ensure the food security, while plant biotechnology offers considerable potential to realize this goal. Over the last 15 years, great benefits have been brought to sustainable agriculture by commercial cultivation of genetically modified (GM) crops. Further development of new GM crops will with no doubt contribute to meeting the requirements for food by the increasing population. The present article provides updated comprehensive information on novel and potential application of cryopreservation to genetic transformation. The major progresses that have been achieved in this subject include (1), long-term storage of a large number of valuable plant genes, which offers a good potential for further development of novel cultivars by genetic transformation; (2), retention of regenerative capacity of embryogenic tissues and protoplasts, which ensures efficient plant regeneration system for genetic transformation; (3), improvement of transformation efficiency and plant regeneration of transformed cells; (4), long-term preservation of transgenic materials with stable expression of transgenes and productive ability of recombinant proteins, which allows transgenic materials to be stored in a safe manner before being analyzed and evaluated, and allows establishment of stable seed stocks for commercial production of homologous proteins. Data provided in this article clearly demonstrate that cryo-technique has an important role to play in the whole chain of genetic transformation. Further studies coupling cryotechnique and genetic transformation are expected to significantly improve development of new GM crops.     

CRISPR/Cas9 for plant genome editing: accomplishments,problems and prospects

The increasing burden of the world population on agriculture requires the development of more robust crops. Dissecting the basic biology that underlies plant development and stress responses will inform the design of better crops. One powerful tool for studying plants at the molecular level is the RNA-programmed genome editing system composed of a clustered regularly interspaced short palindromic repeats (CRISPR)-encoded guide RNA and the nuclease Cas9. Here, some of the recent advances in CRISPR/Cas9 technology that have profound implications for improving the study of plant biology are described. These tools are also paving the way towards new horizons for biotechnologies and crop development.     

Crop improvement in the 21st century

Crop yields increased dramatically in the 20th century as recorded on Broadbalk or in world averages. The vast majority of that increase has occurred since the last world war and has been powered by changes in the genetic potential of the crop and in the way in which it has been managed. Nevertheless, the challenge to feed a world population that is likely to rise to 8 billion is formidable, particularly since recent analyses suggest that the rate of increase in yields of several crops may have dropped over the last decade. What are the opportunities to meet this challenge and to continue to improve the yields of our crops? Improvements in agronomy are likely to be more concerned with efficiency and elegance rather than in major breakthroughs. More sophisticated crop protection chemicals designed on the basis of vastly increased screening potentials and (at last?) possibilities of rational design will be supplemented by a battery of decision support systems to aid management choices which can be precisely implemented. Genetic improvement is the area in which to-look for the major breakthroughs. The broad potential of recombinant DNA technology will provide the possibility of both molecular analyses of crop productivity and ways in which it may be possible to improve that productivity. The goal of analysis may be approached in three ways: starting at the beginning by generating complete sequences of the plant genome; starting at the end by genetic analysis of phenotypes using genetic marker technology; or, starting in the middle, by metabolic analysis. Improvements may be obtained by re-assorting what has been achieved through enhanced breeding technologies, by randomly induced change, and by generation of totally new possibilities through biochemical engineering. Examples of all approaches will be given. The onset of genomics will provide massive amounts of information, but the success will depend on using that to improve crop phenotypes. The ability to meet the challenges of the 21st century will depend on the ability to close that 'phenotype gap'.     

探索新绿色革命的靶标

第一次绿色革命的潜力已经被充分利用,第二次绿色革命正在兴起。全世界的科学家都在探讨新绿色革命的靶标,包括改善核酮糖-1,5-二磷酸（RuBP）羧化酶／力口氧酶（Rubisco）、降低光呼吸和呼吸作用损失、提高RuBP再生能力、改造C3植物成为C4植物例如C4水稻、将蓝细菌的CO2浓缩机制引入c。植物、增加转运蛋白,以及改善作物根系、优化产物品质和加强作物对环境胁迫的抗性。这篇综述主要考察这些靶标的研究进展,并指出潜在的问题。尽管基因工程是一个强有力的工具,但是人们不应当把新绿色革命成功的希望全部寄托在它上面。一些传统的和非转基因的方法也将在这个革命中发挥重要的作用。这个革命的前途是光明的,但是获得成功所需要的时间可能要比一些人估计的15年长得多。     

中国水稻遗传育种历程与展望

我国的水稻育种经历了矮化育种、杂种优势利用和绿色超级稻培育3次飞跃,其间伴随矮化育种(第一次绿色革命)、三系杂交稻培育、二系杂交稻培育、亚种间杂种优势利用、理想株型育种和绿色超级稻培育等6个重要历程。育种目标从唯产量是举到高抗、优质和高产并重,育种理念从高产优质逐步提升为“少投入,多产出,保护环境”。水稻功能基因组研究为第二次绿色革命准备了大量的有重要利用价值的基因,水稻育种正迈向设计育种的新时代。基因组选择技术和转基因技术将为培育“少打农药,少施化肥,节水抗旱,优质高产” 绿色超级稻保驾护航。本文对我国水稻遗传育种的发展历程进行了概括,指出了各种育种方法和育种技术的优缺点,系统介绍了水稻细胞质雄性不育和光温敏雄性核不育以及籼粳杂种不育的分子机制的研究进展,综述了水稻株型、穗型、粒形和养分高效利用相关的重要功能基因,阐明了产量与开花期联动的关系,凸显了我国水稻基础研究在国际上的重要地位。特别指出,近年来,我国水稻生产方式发生了或正在发生巨大变革,育种理念也要与时俱进。未来,杂交育种技术要与现代育种技术紧密结合,选育水稻品种不仅要满足市场需求,而且更要具备绿色健康的特点,同时还要适应新耕作制度和新耕作方法。     

Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding

Next generation sequencing (NGS) technologies are being used to generate whole genome sequences for a wide range of crop species. When combined with precise phenotyping methods, these technologies provide a powerful and rapid tool for identifying the genetic basis of agriculturally important traits and for predicting the breeding value of individuals in a plant breeding population. Here we summarize current trends and future prospects for utilizing NGS-based technologies to develop crops with improved trait performance and increase the efficiency of modern plant breeding. It is our hope that the application of NGS technologies to plant breeding will help us to meet the challenge of feeding a growing world population.

This article is part of the PLOS Biology Collection “The Promise of Plant Translational Research.”

     

Green revolution: preparing for the 21st century.

In the 1960s there were large-scale concerns about the world's ability to feed itself. However, widespread adoption of "green revolution" technology led to major increases in food-grain production. Between 1966 and 1990, the population of the densely populated low-income countries grew by 80%, but food production more than doubled. The technological advance that led to the dramatic achievements in world food production over the last 30 years was the development of high-yielding varieties of wheat and rice. These varieties are responsive to fertilizer inputs, are lodging resistant, and their yield potential is 2-3 times that of varieties available prior to the green revolution. In addition, these varieties have multiple resistance to diseases and insects and thus have yield stability. The development of irrigation facilities, the availability of inorganic fertilizers, and benign government policies have all facilitated the adoption of green-revolution technology. In the 1990s, the rate of growth in food-grain production has been lower than the rate of growth in population. If this trend is not reversed, serious food shortages will occur in the next century. To meet the challenge of feeding 8 billion people by 2020, we have to prepare now and develop the technology for raising farm productivity. We have to develop cereal cultivars with higher yield potential and greater yield stability. We must also develop strategies for integrated nutrient management, integrated pest management, and efficient utilization of water and soil resources.     

Plant nematode resistance genes.

Root-knot and cyst nematodes cause severe damage to crops throughout the world. Genes conferring resistance against nematodes have been identified in many plant species and several of these have been, or soon will be, cloned. Nematode biotypes that can infect resistant plants have been identified. Investigation of cloned resistance genes and of virulent nematodes is likely to lead to improved host resistance.     

New insights to lateral rooting: Differential responses to heterogeneous nitrogen availability among maize root types

Historical domestication and the "Green revolution" have both contributed to the evolution of modern, high-performance crops. Together with increased irrigation and application of chemical fertilizers, these efforts have generated sufficient food for the growing global population. Root architecture, and in particular root branching, plays an important role in the acquisition of water and nutrients, plant performance, and crop yield. Better understanding of root growth and responses to the belowground environment could contribute to overcoming the challenges faced by agriculture today. Manipulating the abilities of crop root systems to explore and exploit the soil environment could enable plants to make the most of soil resources, increase stress tolerance and improve grain yields, while simultaneously reducing environmental degradation. In this article it is noted that the control of root branching, and the responses of root architecture to nitrate availability, differ between root types and between plant species. Since the control of root branching depends upon both plant species and root type, further work is urgently required to determine the appropriate genes to manipulate to improve resource acquisition by specific crops.     

Genetic engineering of wheat--current challenges and opportunities

Wheat is one of the major staple food crops grown worldwide; however, productivity in cereal crops has not kept pace with the world population growth. A significant increase in wheat production (>40% by 2020) is needed simply to keep up with the growing demand. This increase is unlikely to be achieved by conventional plant breeding methods because of the limited gene pool available. The application of recombinant techniques to improve wheat quality and yield is not only desirable but also has potential to open up new opportunities. Although there has been significant progress in developing gene-transformation technologies for improving these traits, this remains an important challenge for plant biotechnology. Obstacles to translate the full potential of the genomic era to wheat breeding include the need to develop elite wheat varieties without selectable markers, introducing minimal or nil intergenic DNA and social and market issues concerning genetically engineered food products.     

Iron and ferritin accumulate in separate cellular locations in <Emphasis Type="Italic">Phaseolus</Emphasis> seeds

Background  

Iron is an important micronutrient for all living organisms. Almost 25% of the world population is affected by iron deficiency, a leading cause of anemia. In plants, iron deficiency leads to chlorosis and reduced yield. Both animals and plants may suffer from iron deficiency when their diet or environment lacks bioavailable iron. A sustainable way to reduce iron malnutrition in humans is to develop staple crops with increased content of bioavailable iron. Knowledge of where and how iron accumulates in seeds of crop plants will increase the understanding of plant iron metabolism and will assist in the production of staples with increased bioavailable iron.     

Salt Tolerance in Selected Vegetable Crops

Ensuring adequate food production is a major issue in the context of an increasing human population, limit to the areas of new land that can be cultivated, and loss of existing cultivated lands to abiotic stresses. Of these stresses, salinity consistently has the greatest impact in reducing the area of cultivated land, often due to inappropriate irrigation techniques. To increase food supply, there is a need to produce salt-tolerant crops, which can grow successfully on salt-affected lands. Among crops, vegetables possess a central position in the human diet because of their nutritional value providing vitamins, carbohydrates, proteins, and mineral nutrients. There are many vegetable crops of local importance around the world but others that are very widely cultivated. All of these vegetable crops are affected by salinity more or less severely. Salinity affects every aspect of vegetable crop development including their morphology, physiological function and yield. Although efforts have been made to understand the mechanisms of salt tolerance in vegetable crops, less attention has been paid to these than to the staple crops. Where attempts have been made to improve salt tolerance of vegetables, the strategies have ranged from exogenous application of fertilizers, compatible solutes or plant growth regulators, to use of advanced molecular techniques for genetic modifications. This review focuses on the responses of pea, okra, tomato, eggplant, pepper, carrot, broccoli, cauliflower, and potato to salt stress and the strategies being used to enhance their salt tolerance.     

Water for food and nature in drought-prone tropics: vapour shift in rain-fed agriculture

This paper quantifies the eco-hydrological challenge up until 2050 of producing food in balance with goods and services generated by water-dependent ecosystems in nature. Particular focus is given to the savannah zone, covering 40% of the land area in the world, where water scarcity constitutes a serious constraint to sustainable development. The analysis indicates an urgent need for a new green revolution, which focuses on upgrading rain-fed agriculture. Water requirements to produce adequate diets for humans are shown to be relatively generic irrespective of hydro-climate, amounting to a global average of 1,300 m(3) cap(-1) yr(-1). Present food production requires an estimated 6,800 km(3) yr(-1) of consumptive green water (5,000 km(3) yr(-1) in rain-fed agriculture and 1,800 km(3) yr(-1) from irrigated crops). Without considering water productivity gains, an additional 5,800 km(3) yr(-1) of water is needed to feed a growing population in 2,050 and eradicate malnutrition. It is shown that the bulk of this water will be used in rain-fed agriculture. A dynamic analysis of water productivity and management options indicates that large 'crop per drop' improvements can be achieved at the farm level. Vapour shift in favour of productive green water flow as crop transpiration could result in relative water savings of 500 km(3) yr(-1) in semi-arid rain-fed agriculture.