Assigning birds to wintering and breeding grounds using stable isotopes: lessons from two feather generations among three intercontinental migrants

Geographic origins of populations and migration patterns of several vertebrate and invertebrate species have been inferred from geographically distinct isotopes in their tissues. To test the hypothesis that feathers grown on different continents would reflect continental differences of δD in precipitation and have significantly different stable isotope ratios, we analyzed stable isotopes in two generations of feathers from three bird species (American and Pacific golden-plovers, Pluvialis dominica and P. fulva, and northern wheatears Oenanthe oenanthe) that breed in North America and winter in South America, the South Pacific and Asia, and Africa. We found significant differences in stable isotope signatures between summer- and winter-grown feathers in the plovers, and our use of two generations of feathers provided similar variation to that reported in studies using larger sample sizes. In contrast to plovers, no differences were detected in isotope values between summer- and winter-grown feathers in wheatears. Discriminant analyses separated 80% of summer- and winter-grown feathers for each plover species. Nonetheless, an “assignment with exclusion” method adapted from population genetics to impart a measure of confidence in assigning individuals to groups of origin resulted in an overall accuracy among plovers of only 41%, compared with a 63% assignment accuracy when the exclusion criterion was removed. Thus, we were unable to accurately assign feathers to origin of growth on the continental scale. Moreover, using δD expectations for North America, we were unable to assign summer-grown plover feathers to within better than several thousand kilometers of their true origins. We urge researchers to carefully consider the ecology and physiology of their study organisms, statistical methodology, and the interpretation of results when using stable isotopes to infer the geographic origins of feather growth.     

Multiple means to the same end: the genetic basis of acquired stress resistance in yeast

In nature, stressful environments often occur in combination or close succession, and thus the ability to prepare for impending stress likely provides a significant fitness advantage. Organisms exposed to a mild dose of stress can become tolerant to what would otherwise be a lethal dose of subsequent stress; however, the mechanism of this acquired stress tolerance is poorly understood. To explore this, we exposed the yeast gene-deletion libraries, which interrogate all essential and non-essential genes, to successive stress treatments and identified genes necessary for acquiring subsequent stress resistance. Cells were exposed to one of three different mild stress pretreatments (salt, DTT, or heat shock) and then challenged with a severe dose of hydrogen peroxide (H(2)O(2)). Surprisingly, there was little overlap in the genes required for acquisition of H(2)O(2) tolerance after different mild-stress pretreatments, revealing distinct mechanisms of surviving H(2)O(2) in each case. Integrative network analysis of these results with respect to protein-protein interactions, synthetic-genetic interactions, and functional annotations identified many processes not previously linked to H(2)O(2) tolerance. We tested and present several models that explain the lack of overlap in genes required for H(2)O(2) tolerance after each of the three pretreatments. Together, this work shows that acquired tolerance to the same severe stress occurs by different mechanisms depending on prior cellular experiences, underscoring the context-dependent nature of stress tolerance.     

Genetic variation in blue whales in the eastern pacific: implication for taxonomy and use of common wintering grounds

Many aspects of blue whale biology are poorly understood. Some of the gaps in our knowledge, such as those regarding their basic taxonomy and seasonal movements, directly affect our ability to monitor and manage blue whale populations. As a step towards filling in some of these gaps, microsatellite and mtDNA sequence analyses were conducted on blue whale samples from the Southern Hemisphere, the eastern tropical Pacific (ETP) and the northeast Pacific. The results indicate that the ETP is differentially used by blue whales from the northern and southern eastern Pacific, with the former showing stronger affinity to the region off Central America known as the Costa Rican Dome, and the latter favouring the waters of Peru and Ecuador. Although the pattern of genetic variation throughout the Southern Hemisphere is compatible with the recently proposed subspecies status of Chilean blue whales, some discrepancies remain between catch lengths and lengths from aerial photography, and not all blue whales in Chilean waters can be assumed to be of this type. Also, the range of the proposed Chilean subspecies, which extends to the Galapagos region of the ETP, at least seasonally, perhaps should include the Costa Rican Dome and the eastern North Pacific as well.     

Molecular mechanisms of self-incompatibility in flowering plants and fungi - different means to the same end

Hermaphrodite flowering plants and fungi face the same sexual dilemma - how to avoid self-fertilization. Both have evolved ingenious recognition systems that reduce or eliminate the possibility of selfing. These self-incompatibility (SI) systems offer unique opportunities to study recognition and signalling in non-animal cells and also represent model systems for studying the evolution of breeding systems at a molecular level. In this review, the authors discuss recent molecular data that predict an astonishing diversity in the cellular mechanisms of SI operating in flowering plants and fungi.     

A comparison of the song and territorial behaviour of a long-distance migrant, the Marsh Warbler Acrocephalus palustris, in summer and winter

Colour-ringed populations of Marsh Warblers Acrocephalus palustris on breeding and wintering grounds were compared with respect to song and territorial behaviour. Song and territorial defence had a short duration on the breeding grounds, peaking during the period of mate acquisition and mate-guarding. Some males later showed polyterritorial behaviour. Wintering Marsh Warblers sang and showed defensive behaviour for a longer period which included moult. This behaviour could be described in terms of defence of a short-term resource (a fertile female) in the summer and long-term defence of a reliable food resource in the winter.     

Different routes to the same ending: comparing the N-glycosylation processes of Haloferax volcanii and Haloarcula marismortui, two halophilic archaea from the Dead Sea

Recent insight into the N-glycosylation pathway of the haloarchaeon, Haloferax volcanii, is helping to bridge the gap between our limited understanding of the archaeal version of this universal post-translational modification and the better-described eukaryal and bacterial processes. To delineate as yet undefined steps of the Hfx. volcanii N-glycosylation pathway, a comparative approach was taken with the initial characterization of N-glycosylation in Haloarcula marismortui, a second haloarchaeon also originating from the Dead Sea. While both species decorate the reporter glycoprotein, the S-layer glycoprotein, with the same N-linked pentasaccharide and employ dolichol phosphate as lipid glycan carrier, species-specific differences in the two N-glycosylation pathways exist. Specifically, Har. marismortui first assembles the complete pentasaccharide on dolichol phosphate and only then transfers the glycan to the target protein, as in the bacterial N-glycosylation pathway. In contrast, Hfx. volcanii initially transfers the first four pentasaccharide subunits from a common dolichol phosphate carrier to the target protein and only then delivers the final pentasaccharide subunit from a distinct dolichol phosphate to the N-linked tetrasaccharide, reminiscent of what occurs in eukaryal N-glycosylation. This study further indicates the extraordinary diversity of N-glycosylation pathways in Archaea, as compared with the relatively conserved parallel processes in Eukarya and Bacteria.     

Variation between and within colonies in the termite: morphology, genomic DNA, and behaviour

We investigate the structure between and within colonies of Schedorhinotermes lamanianus (Isoptera: Rhinotermitidae) at a cluster of foraging galleries in Shimba Hills National Reserve, Kenya. Three independent methods (morphometrics of minor soldiers, multilocus fingerprinting from genomic DNA of workers, and aggression tests between workers) yielded concordant results concerning number and spatial extent of colonies as well as variation between and within colonies. At least three colonies exist in our study area. Genetic data reveal that the largest colony is genetically and spatially substructured in three subsidiary nests, which may form reproductive units. These subsidiary nests were not completely isolated as we were able to document exchange of workers. Subsidiary nests may facilitate foundation of colonies by budding which may generate isolation by distance (population viscosity).     

N-linked glycosylation in Archaea: two paths to the same glycan

N‐linked protein glycosylation occurs in all three branches of life, eukaryotes, bacteria and archaea. The simplest system is that of the bacterium, Campylobacter jejuni, in which a heptasaccharide glycan is added to multiple proteins from a single lipid carrier molecule. In the eukaryotic system a conserved tetradecasaccharide modification is first added to target proteins, but is then modified by trimming and addition of other glycans from additional carrier molecules resulting in a diverse array of glycans of distinct functionality. In the halophilic Archaea from the Dead Sea, Haloferax volcanii, the surface array or S‐layer protein is glycosylated with a pentasaccharide. This glycan is synthesized from two separate carrier molecules, one that carries a tetrasaccharide and another that carries the terminal mannose, in a process that is analogous to that of eukaryotes. In this issue of Molecular Microbiology the glycosylation of the S‐layer of another halophilic Archaea from the Dead Sea, Haloarcula marismortui is characterized ( Calo et al., 2011 ). This S‐layer is glycosylated with the same pentasaccharide as that of Hfx. volcanii, but the intact pentasaccharide is synthesized on a single carrier molecule in Har. marismortui in a process that more closely resembles that of the bacterial N‐linked system.     

Different responses to photoperiod in non-diapausing colonies of the flesh fly, Boettcherisca peregrina

Abstract.  The effect of photoperiod on pupariation time and the ability to secrete ecdysteroids by the larval ring gland of the flesh fly, Boettcherisca peregrina , are compared among three tropical non-diapausing colonies, Bp (forest), Bp (Luwuk) and Bp (NC) and one temperate diapausing colony of Bp (Tokyo). Non-diapausing colonies do not enter diapause under any photoperiod at 20°C, whereas the Bp (Tokyo) diapausing colony enters diapause at the pupal stage under a short-day photoperiod. The times required for 50% pupariation of Bp (forest), Bp (Luwuk) and Bp (Tokyo) are 34 h, 36 h 20 min and 34 h 40 min under short days (SD), respectively. However, Bp (NC) pupariates in a much shorter time (26 h 10 min) compared with the others. The 50% pupariation times of Bp (NC), Bp (forest) and Bp (Tokyo) under long days (LD) are 27 h, 25 h 50 min and 26 h 40 min, respectively. However, it is much longer in Bp (Luwuk) at 53 h 20 min. The rates of secretion of ecdysteroids by the larval ring glands in vitro in Bp (Tokyo) and Bp (forest) are six- to ten-fold higher under SD (6.00 and 3.69 ng) than under LD (0.60 ng), whereas the ring glands of Bp (Luwuk) and Bp (NC) secrete 3.06 and 8.25 ng ecdysteroids under LD and 5.18 and 10.53 ng under SD, respectively. These results suggest there are at least three different physiological types among non-diapausing colonies of B. peregrina : Bp (forest), Bp (Luwuk) and Bp (NC).     

Cell polarity in plants: when two do the same, it is not the same...

In unicellular and multicellular organisms, cell polarity is essential for a wide range of biological processes. An important feature of cell polarity is the asymmetric distribution of proteins in or at the plasma membrane. In plants such polar localized proteins play various specific roles ranging from organizing cell morphogenesis, asymmetric cell division, pathogen defense, nutrient transport and establishment of hormone gradients for developmental patterning. Moreover, flexible respecification of cell polarities enables plants to adjust their physiology and development to environmental changes. Having evolved multicellularity independently and lacking major cell polarity mechanisms of animal cells, plants came up with alternative solutions to generate and respecify cell polarity as well as to regulate polar domains at the plasma membrane.     

The gene mpn310 (hmw2) from Mycoplasma pneumoniae encodes two proteins, HMW2 and HMW2-s, which differ in size but use the same reading frame

The gene mpn310 from Mycoplasma pneumoniae encodes the proteins HMW2 with a molecular weight of 215 621 and the smaller P28, here called HMW2-s. Because HMW2-s is not well defined, it was isolated from protein extracts of M. pneumoniae cells and its N-terminal end was determined by MS. HMW2-s starts with the methionine at the amino acid position 1620 of HMW2 and its residual sequence is identical to the last 198 amino acids of HMW2, predicting a molecular weight of 23 204. These results were confirmed by the comparative MS analysis of HMW2-s that had been synthesized in Escherichia coli . A precursor–product relationship between HMW2 and HMW2-s could be excluded, because HMW2-s can be translated from a specific mRNA starting within mpn310 . The conservation of an HMW2-s like protein in M. pneumoniae and Mycoplasma genitalium emphasizes its possible functional importance.     

Mutualism and pathogenesis in Xenorhabdus and Photorhabdus: two roads to the same destination

Photorhabdus and Xenorhabdus bacteria colonize the intestines of the infective soil-dwelling stage of entomophagous nematodes, Heterorhabditis and Steinernema, respectively. These nematodes infect susceptible insect larvae and release the bacteria into the insect blood. The bacteria kill the insect larvae and convert the cadaver into a food source suitable for nematode growth and development. After several rounds of reproduction the nematodes are recolonized by the bacteria before emerging from the insect cadaver into the soil to search for a new host. Photorhabdus and Xenorhabdus bacteria therefore engage in both pathogenic and mutualistic interactions with different invertebrate hosts as obligate components of their life cycle. In this review we aim to describe current knowledge of the molecular mechanisms utilized by Photorhabdus and Xenorhabdus to control their host-dependent interactions. Recent work has established that there is a trade-off between pathogenicity and mutualism in both these species of bacteria suggesting that the transition between these interactions must be under regulatory control. Despite the superficial similarity between the life cycles of these bacteria, it is now apparent that the molecular components of the regulatory networks controlling pathogenicity and mutualism in Photorhabdus and Xenorhabdus are very different.     

Adoption of chicks and the level of relatedness in common gull, Larus canus, colonies: DNA fingerprinting analyses

In common gull colonies on islands of the Vistula River, Poland, adoption of chicks is common. In 1997, we observed 81 chicks from 35 nests. Of these, 19 (23.4%) left their natal broods and were adopted by other pairs. Another 11 (31.4%) were driven from the foreign territory by the owners. Foreign chicks were adopted by 15 pairs (42.9%). Eleven pairs (31.4%) drove foreign chicks from the territory. To test if the frequent adoptions in these colonies could be explained by kin selection or the occurrence of kin groups, we calculated band-sharing coefficients and genetic relatedness (r) between interacting birds (neighbours and non-neighbours). Adults that adopted were most often neighbours of the biological parents of adopted chicks, whereas spatially segregated birds, nesting further away, usually drove off the chicks. Band-sharing coefficients between males, but not females, were higher with decreasing internest distances. The band-sharing coefficients for adopted chicks and foster parents were significantly higher than for adopted chicks and randomly selected, spatially segregated pairs from the same and another colony. Band-sharing coefficients of adopted chicks and adopting neighbours (males: r=0.20; females: r=0.16) also tended to be higher than those of rejected chicks and rejecting neighbours (both sexes: r=0.08). Our results suggest that kin groups of neighbours do occur in common gull colonies. Such social structure might lead to indirect inclusive fitness benefits of adopting pairs. Differences in genetic similarity between chicks and adopting or rejecting neighbours show that at least in common gulls we should consider kin altruism as a factor in adoptions. Copyright 2000 The Association for the Study of Animal Behaviour.     

Comparison of cobalamin-independent and cobalamin-dependent methionine synthases from Escherichia coli: two solutions to the same chemical problem.

In Escherichia coli, two enzymes catalyze the synthesis of methionine from homocysteine using methyltetrahydrofolate as the donor of the required methyl group: cobalamin-dependent and cobalamin-independent methionine synthases. Comparison of the mechanisms of these two enzymes offers the opportunity to examine two different solutions to the same chemical problem. We initiated the research described here to determine whether the two enzymes were evolutionarily related by comparing the deduced amino acid sequences of the two proteins. We have determined the nucleotide sequence for the metE gene, encoding the cobalamin-independent methionine synthase. Our results reveal an absence of similarity between the deduced amino acid sequences of the cobalamin-dependent and cobalamin-independent proteins and suggest that the two have arisen by convergent evolution. We have developed a rapid one-step purification of the recombinant cobalamin-independent methionine synthase (MetE) that yields homogeneous protein in high yield for mechanistic and structural studies. In the course of these studies, we identified a highly reactive thiol in MetE that is alkylated by chloromethyl ketones and by iodoacetamide. We demonstrated that alkylation of this residue, shown to be cysteine 726, results in complete loss of activity. While we are unable to deduce the role of cysteine 726 in catalysis at this time, the identification of this reactive residue suggests the possibility that this thiol functions as an intermediate methyl acceptor in catalysis, analogous to the role of cobalamin in the reaction catalyzed by the cobalamin-dependent enzyme.     

Bovine cytochrome c oxidases,purified from heart,skeletal muscle,liver and kidney,differ in the small subunits but show the same reaction kinetics with cytochrome c

(1) Polyacrylamide gel electrophoresis in the presence of sodium dodecyl sulphate of purified cytochrome c oxidase preparations revealed that bovine kidney, skeletal muscle and heart contain different cytochrome c oxidase isoenzymes, which show differences in mobility of the subunits encoded by the nuclear genome. No differences in subunit pattern were observed between the oxidase preparations isolated from kidney and liver. (2) The kinetics of the steady-state reactions between bovine ferrocytochrome c and the four types of bovine cytochrome c oxidase preparation were compared under conditions of both high- and low-ionic strength. Also the pre-steady-state kinetics were studied. Only minor differences were observed in the electron-transfer activity of the isoenzymes. Thus, our experiments do not support the notion that the subunits encoded by the nuclear genome act as modulators conferring different activities to the isoenzymes of cytochrome c oxidase. (3) The cytochrome c oxidase preparation from bovine skeletal muscle was found to consist mainly of dimers, whereas the enzymes isolated from bovine kidney, liver and heart were monomeric.     

Integumentary structure and its relationship to wiping behaviour in the common Indian tree frog, Polypedates maculatus

Skin of the Indian tree frog, Polypedates maculatus (Rhacophoridae), was studied in the context of self-wiping behaviour which functions to expel and distribute cutaneous secretions recently shown to retard evaporative water loss. The secretions contain both mucus and lipids and are derived from a common gland considered to be homologous with characteristic anuran mucous glands. The glands are bipotent and secrete both mucus and lipoid products which are evidently mixed within the glandular lumen. Another type of gland resembling characteristic anuran serous (or granular) glands is found in dorsal but not ventral skin, whereas the lipid-secreting mucous glands are found in skin associated with all body surfaces. There is no distinct, lipid-secreting gland present in the skin of this species other than the mucous glands. These histochemical data complement the earlier finding that resistance to evaporative water loss in this species is relatively small compared with phyllomedusine 'waterproof frogs which also exhibit wiping behaviour associated with secretion of lipids. Thus, wiping behaviour may have evolved in association with mucous secretions before dominant lipoid secretions resulted from strong selection for water conservation.     

Correction to: Categorizing the influences of two large seabird colonies on island freshwater ecosystems in the Northwest Atlantic Ocean

Hydrobiologia - Due to an unfortunate mistake during the production process, the inset map in Fig. 1a is missing. The original article has been corrected and the correct display of...