Influence of the trapped ions on the screening effect and frictional force in a dusty plasma

The problem of screening of the charge acquired by a dust grain in a two-temperature plasma is considered. The influence of the trapped ions on the screening effect and on the frictional force exerted on a dust grain by an ion flow is investigated. It is shown that the ions trapped by a grain radically reduce the frictional force in the ion flow because their distribution is determined by the temperature of the cold buffer gas. The mechanism for the onset of the reactive force that accelerates the grain in the direction opposite to that of the flow is explained. It is based on the momentum transfer from the flow of the ions that are additionally accelerated in the grain field to the atoms of the buffer gas. As a result, the momentum carried by the charge-exchange atoms out of the “ions + grain” system exceeds the momentum they have carried into the system; this gives rise to a reactive force directed opposite to the ion flow (the negative frictional force). The magnitude of the reactive force is estimated.     

Dust-acoustic waves in a nonuniform adiabatic dusty plasma in the presence of polarization force

The linear propagation of the dust-acoustic (DA) waves in a nonuniform adiabatic dusty plasma, which consists of inertialess adiabatic electrons, inertialess adiabatic ions, and inertial negatively charged dust by taking into account the effects of polarization force, is theoretically investigated. It is found that the linear dispersion properties of the DA waves are significantly modified by the dust density nonuniformity, adiabaticity of electrons and ions, and the effects of the polarization force. It is shown that the phase speed of the DA waves is increased with the increase of adiabaticity of electrons and ions but decreased with the increase of the effects of polarization force. It is also shown that the dust density is enhanced with the increase of adiabatic index but depleted with the increase of polarization force. The scenarios relevant to dust-ion plasma in space environments are briefly addressed.     

Effect of dust charge fluctuations on dust acoustic structures in magnetized dusty plasma containing nonextensive electrons and two-temperature isothermal ions

Effect of dust electrical charge fluctuations on the nature of dust acoustic solitary waves (DASWs) in a four-species magnetized dusty plasma containing nonextensive electrons and two-temperature isothermal ions has been investigated. In this model, the negative dust electric charge is considered to be proportional to the plasma space potential. The nonlinear Zakharov–Kuznetsov (ZK) and modified Zakharov–Kuznetsov (mZK) equations are derived for DASWs by using the standard reductive perturbation method. The combined effects of electron nonextensivity and dust charge fluctuations on the DASW profile are analyzed. The different ranges of the nonextensive q-parameter are considered. The results show that solitary waves the amplitude and width of which depend sensitively on the nonextensive q-parameter can exist. Due to the electron nonextensivity and dust charge fluctuation rate, our dusty plasma model can admit both positive and negative potential solitons. The results show that the amplitude of the soliton increases with increasing electron nonextensivity, but its width decreases. Increasing the electrical charge fluctuations leads to a decrease in both the amplitude and width of DASWs.     

Nonlinear ion modes in a strongly coupled plasma in the presence of nonthermal ion fluids and polarization force

The nonlinear propagation of ion-acoustic (IA) waves in a strongly coupled plasma system containing Maxwellian electrons and nonthermal ions has been theoretically and numerically investigated. The well-known reductive perturbation technique is used to derive both the Burgers and Korteweg?de Vries (KdV) equations. Their shock and solitary wave solutions have also been numerically analyzed in understanding localized electrostatic disturbances. It has been observed that the basic features (viz. polarity, amplitude, width, etc.) of IA waves are significantly modified by the effect of polarization force and other plasma parameters (e.g., the electron-to-ion number density ratio and ion-to-electron temperature ratio). This is a unique finding among all theoretical investigations made before, whose probable implications are discussed in this investigation. The implications of the results obtained from this investigation may be useful in understanding the wave propagation in both space and laboratory plasmas.     

Electrical noise from lipid bilayer membranes in the presence of hydrophobic ions

Summary In the presence of the hydrophobic ion dipicrylamine, lipid bilayer membranes exhibit a characteristic type of noise spectrum which is different from other forms of noise described so far. The spectral density of current noise measured at zero voltage increases in proportion to the square of frequency at low frequencies and becomes constant at high frequencies. The observed form of the noise spectrum can be interpreted on the basis of a transport model for hydrophobic ions in which it is assumed that the ions are adsorbed in potential-energy minima at either membrane surface and are able to cross the central energy barrier by thermal activation. Accordingly, current-noise results from random fluctuations in the number of ions jumping over the barrier from right to left and from left to right. On the basis of this model the rate constantk _i for the translocation of the hydrophobic ion across the barrier, as well as the mean surface concentrationN _t of adsorbed ions may be caluculated from the observed spectral intensity of current noise. The values ofk _i obtained in this way closely agree with the results of previous relaxation experiments. A similar, although less quantitative, agreement is also found for the surface concentrationN _t .     

Electrical noise from lipid bilayer membranes in the presence of hydrophobic ions

In the presence of the hydrophobic ion dipicrylamine, lipid bilayer membranes exhibit a characteristic type of noise spectrum which is different from other forms of noise described so far. The spectral density of current noise measured in zero voltage increases in proportion to the square of frequency at low frequencies and becomes constant at high frequencies. The observed form of the noise spectrum can be interpreted on the basis of a transport model for hydrophobic ions in which it is assumed that the ions are adsorbed in potential-energy minima at either membrane surface and are able to cross the central energy barrier by thermal activation. Accordingly, current-noise results from random fluctuations in the number of ions jumping over the barrier from right to left and from left to right. On the basis of this model the rate constant ki for the translocation of the hydrophobic ion across the barrier, as well as the mean surface concentration Nt of adsorbed ions may be calculated from the observed spectral intensity of current noise. The values of ki obtained in this way closely agree with the results of previous relaxation experiments. A similar, although less quantitative, agreement is also found for the surface concentration Nt.     

Dynamics of a high-temperature pinch in the presence of dust

Results are presented from experimental studies of the formation of a pinch in a plasma focus discharge in the presence of Al₂O₃ dust grains. Considerable attention is given to an analysis of the method for creating a dust target and determining its parameters. Phase transitions in a dust medium have been analyzed. It is found that the phase state of the dust component can be substantially affected by the radiation of the imploding plasma shell even in the preimplosion phase of the discharge. It is shown that a pinch produced in the presence of dust is more stable against MHD instabilities.     

Formation of gels in the presence of metal ions

A small library of stereoisomeric pseudopeptides able to make gels in different solvents has been prepared and their attitude to make gels in the presence of several metal ions was evaluated. Four benzyl esters and four carboxylic acids, all containing a moiety of azelaic acid (a long chain dicarboxylic acid) coupled with four different pseudopeptide moieties sharing the same skeleton (a phenyl group one atom apart from the oxazolidin-2-one carboxylic group), were synthesized in solution, by standard coupling reaction. The tendency of these pseudopeptides to form gels was evaluated using the inversion test of 10 mM solutions of pure compounds and of stoichiometric mixtures of pseudopeptides and metal ions. To obtain additional information on the molecular association, the gel samples were left dry in the air to form xerogels that were further analyzed using SEM and XRD. The formation of gel containing Zn(II) or Cu(II) ions gave good results in term of incorporation of the metal ions, while the presence of Cu(I), Al(III) and Mg(II) gave less satisfactory results. This outcome is a first insight in the formation of stable LMWGs formed by stoichiometric mixtures of pseudopeptides and metal ions. Further studies will be carried out to develop similar compounds of pharmacological interest.     

Capacitance of bilayers in the presence of lipophilic ions

The capacitance of glycerolmonooleate and egg phosphatidylcholine bilayer membranes in the presence of NaCl solutions containing tetraphenylborate, tetraphenylarsonium or dipicrylamine ions has been measured using alternating current techniques over a wide range of frequencies (1–200 kHz). The concentrations of ions corresponded to the lower limits of conductance saturation. Similar determinations were also made with solutions containing no lipophilic ions. The experimental method used in this work requires correction of admittance measurements for the solution resistance in series with the membrane, as well as careful area determinations. In all cases membrane capacitance levels off at sufficiently high frequencies to values which are independent of frequency. The high-frequency capacitance, which is regarded as the ‘geometrical capacitance’ due to dielectric polarization, is practically unaffected by the presence of lipophilic ions. The results support the assumption made in other studies, such as in charge pulse investigations, that the adsorption of lipophilic ions at concentrations up to the saturation range does not have an important effect on the dielectric properties of bilayers.     

Diapause incidence in the two-spotted spider mite increases due to predator presence, not due to selective predation

We recently reported evidence for increased diapause incidence in the spider mite Tetranychus urticae in presence of the predatory mite Typhlodromus pyri. This effect may arise from (1) selective predation on non-diapause spider mites, (2) predator-induced diapause in spider mites, or (3) both. Using a different strain of T. urticae, we first recovered increased diapause incidence in association with predators. Then, we tested for selective feeding in two-choice experiments with equal numbers of non-diapause and diapause spider mites. We found that the predatory mite had a significant preference for the latter. This indicates that increased diapause incidence in association with predatory mites is not due to selective predation. Therefore, predator-mediated physiological induction of diapause seems a more likely explanation. The cues leading to induction appear to relate to the predators, not their effects, since predation simulated by spider-mite removal or puncturing did not significantly affect diapause incidence. Why spider mites benefit from this response, remains an open question.This revised version was published online in May 2005 with a corrected cover date.     

Codon discrimination due to presence of abundant non-cognate competitive tRNA

It has been thought that preferential use of synonymous codons provides high efficiency and fidelity of protein synthesis through specific codon-anticodon interactions. In yeast genes, some codon boxes seem to prefer a codon which is unsuited for its cognate anticodon. Now, we propose that codon usage biases may arise due to presence of abundant non-cognate competitive tRNA capable of misreading a codon by C-U or G-U pairing in the middle position.     

Onset condition of the subcritical geodesic acoustic mode instability in the presence of energetic-particle-driven geodesic acoustic mode

An analytic model is developed for understanding the abrupt onset of geodesic acoustic mode (GAM) in the presence of chirping energetic-particle-driven GAM (EGAM). This abrupt excitation phenomenon has been observed on LHD plasma. Threshold conditions for the onset of abrupt growth of GAM are derived, and the period doubling phenomenon is explained. The phase relation between the mother mode (EGAM) and the daughter mode (GAM) is also discussed. This result contributes to the understanding of “trigger problems” of laboratory and nature plasmas.     

pH-dependent glycine uptake in the presence and absence of sodium ions from rat small intestine

Intestinal uptake of glycine in rats was stimulated 15-20% in the presence of 120 mM Na at pH 6.0 and below but around neutral pH, the amino acid uptake was augmented to 60% compared to that in the Na-free medium. Glycine uptake was 30% more at pH 5.5 compared to that at pH 7.3 in the absence of Na. Kinetic analysis revealed a decrease in Kt for glycine uptake (9.62 mM) at pH 5.5 compared to that at pH 7.3 (Kt = 16.67 mM) with no change in maximal velocity (1.51 mumole/10 min/g tissue) in Na-free buffer. Addition of -SH group reacting reagents to the incubation medium produced 36-58% inhibition of glycine uptake in the presence of Na. However, in absence of Na, inhibition of the order of 21-35% and 8-23% was observed at pH 5.5 and 7.0, respectively. These findings suggest that glycine uptake in rat intestine is influenced by pH and -SH groups are implicated in the process(es).     

A transition from a twice-folded structure to a hairpin in oligo(dG) in the presence of magnesium ions

A long (dG)n stretch can fold twice forming an intramolecular tetrahelix stabilized by guanine tetrads and stacking interactions between them (G-structure). In this paper, we show that magnesium ions induce a transition of the (dG)n stretch from the G-structure to the hairpin stabilized by Hoogsteen-like G.G base pairs (G-hairpin). This transition between the G-structure and the G-hairpin is detected by chemical probing. The characteristic time of the transition for a (dG)28 at 4 degrees C exceeds five hours, which allowed us to separate these two forms by electrophoresis at low temperature. We believe that the slowness of the transition is due to the fact that half of the deoxyguanosines in the insert must change their conformation from syn to anti or vice versa.     

Catch estimation in the presence of declining catch rate due to gear saturation

One strategy for estimating total catch is to employ two separate surveys that independently estimate total fishing effort and catch rate with the estimator for total catch formed by their product. Survey designs for estimating catch rate often involve interviewing the fishermen during their fishing episodes. Such roving designs result in incomplete episode data and characteristically have employed a model in which the catch rate is assumed to be constant over time. This article extends the problem to that of estimating total catch in the presence of a declining catch rate due, e.g., to gear saturation. Using a gill net fishery as an example, a mean-of-ratios type of estimator for the catch rate together with its variance estimator are developed. Their performance is examined using simulations, with special attention given to effects of restrictions on the roving survey window. Finally, data from a Fraser River gill net fishery are used to illustrate the use of the proposed estimator and to compare results with those from an estimator based on a constant catch rate.     

Mechanism of DNA denaturation in the presence of manganese ions

The unwinding of DNA strands in the presence of small concentrations of Mn²⁺ ions (2 × 10^?4?4 × 10^?4M) has been studied. The process of unwinding is nonequilibrium; the DNA strands are gradually unwound at a constant temperature corresponding to the beginning of the melting curve. There is no true renaturation in the partially melted DNA. It is shown in the paper that these effects are due to the aggregation of the unwound DNA regions. The Mn²⁺ ions are responsible for the binding of the unwound strands. The aggregation precludes renaturation, shifts the equilibrium towards the melted state, and causes slow unwinding at a constant temperature. The binding of denaturated regions seems to occur through the guanines.