Further evidence for the importance of residual leaf protein complexes in litter decomposition and the supply of nitrogen for plant growth

Summary The nitrogen absorbed by birch seedlings grown in sand culture has been used as a measure of the resistance to decomposition of complexes formed in vitro by interaction between protein and water-extractable leaf constituents ofCalluna vulgaris, Chamaenerion angustifolium andCircaea lutetiana. The resistance to decomposition of these complexes measured in this way isCalluna vulgaris >Chamaenerion angustifolium >Circaea lutetiana. This result seems to be in agreement with the soil-forming and field characteristics of these species and especially the raw humus-forming tendencies ofCalluna vulgaris.The nitrogen released, as measured by the nitrogen absorbed by birch seedlings, fromCalluna raw humus (H-layer material) and the model protein —Calluna leaf extractives complex is very nearly proportional to the widely different amounts of total nitrogen initially added to the root environment thereby suggesting that the organic nitrogen of the model complex and of theCalluna raw humus have similar properties.The amount of nitrogen absorbed by the birch seedlings when unaltered protein was added to the sand culture was less than when protein —Circaea lutetiana leaf extractives complex was added. This is ascribed to too rapid release and loss of nitrogen before it could be absorbed by the birch seedling roots and suggests a role for some leaf protein complexes in the conservation of litter nitrogen. Some possible effects of protein complexes in relation to the digestion of fresh and dry leaf material of various plant species by animals are discussed.Information from archeological observations and from investigations into the tanning of proteins is considered in relation to possible factors influencing the decomposition of protein complexes of litter and it seems probable that a less acid reaction,e.g. such as is brought about by the addition of adequate amounts of calcareous material, will assist the mobilization of the nitrogen of raw-humus-forming litter.The contention that the protein-precipitating substances of leaves are of fundamental importance in soil processes, especially raw humus formation and the supply of nutrients for plant growth, is considered to be supported by experimental approaches from different directions.     

Containment in industrial biotechnology within wastewater treatment plants

Both physical and biological containment are considered to be essential parts in the risk analysis of industrial Good Industrial Large-Scale Practice (GILSP) processes using genetically modified organisms (GMOs). Biological containment of industrial microorganisms has become a more important issue since the introduction of recombinant DNA techniques. In the event of an accidental discharge in the production plant, a large amount of organisms could be released into the wastewater treatment (WWT) system. This WWT system should therefore be considered as a part of the containment. This study demonstrates both a hydrodynamic and a microbiological model for the containment aspects of industrial WWT plants. The models are verified by measurements using industrial hosts of GILSP GMOs at full scale. Both models describe the full-scale equipment accurately. The results are supplemented with microcosm studies on survival of GMOs in defined niches. It is shown that WWT plants can be considered as useful additional parts of the containment of microorganisms, in case of an accidental discharge. The effect of drainage of an enormous amount of microorganisms (several tons) through the WWT plant into the environment is shown to be comparable to the direct drainage of a small-scale fermenter. Microcosm experiments correlate well with the survival rates in the WWT and therefore can be of use to predict the behaviour of GMOs in this environment. Journal of Industrial Microbiology & Biotechnology (2002) 28, 65–69 DOI: 10.1038/sj/jim/7000210 Received 16 July 2001/ Accepted in revised form 05 September 2001     

Biology and Evolution of Beneficial and Detrimental Viruses of Animals, Plants, and Fungi

Virtually every type of organism may serve as a host for viruses. In some hosts, virus presence may be considered beneficial to humans; in other hosts, viruses are considered detrimental. Examples of viruses that are considered beneficial to humans include those that are used for biological control of organisms that themselves are considered detrimental to humans, such as plant pathogenic fungi. Viruses are extremely variable in terms of morphology, structure, and genome organization. However, viruses that attack hosts from different kingdoms may be related, deriving from the same phylogeny. This paper summarizes some of the properties of three related families of viruses that attack hosts in different kingdoms: the animal-infecting Picornaviridae, the plant-infecting Potyviridae, and the fungus-infecting Hypoviridae. Properties of these viruses that set them apart from each other and factors that may affect their evolution are discussed.     

Spatial Variability in Decomposition Rates in a Desert Scrub of Northwestern Mexico

The decomposition of leaf litter for five dominant plant species of a desert scrub in Baja California Sur, Mexico was investigated. We designed a factorial decomposition experiment using decomposition bags and the collected leaf-litter from Prosopis articulata, Jatropha cinerea, J. cuneata, Cyrtocarpa edulis, and Fouquieria diguetti. Factors, such as radiation exposure, rainfall, and the size of litter-consuming organisms were considered. The rates of litter decomposition were calculated for these plant species and the environmental conditions by using single exponential models. The initial concentration of nutrients (C, N, P, K, and Ca) and crude-fiber content of the leaf litter were determined. Our results show that the environmental heterogeneity generated by different conditions of radiation exposure and short-term rainfall patterns are the most relevant factors affecting decomposition processes in this Sonoran desert community. A species-specific pattern was observed in decay rates and mass-loss patterns. Decomposition rates varied from 0.0027 to 0.0201 depending on the species and exposure to different ecological conditions. The decay rates were higher under bare-soil conditions and during a wet year than under the shade provided by the canopy of nurse trees and during a dry year. The leaf litter of J. cuneata reincorporated to the soil more rapidly than that of P. articulata and C. edulis. Termites were the more important macroarthropods associated with litter decomposition, and their harvest distribution was independent of the resources distribution. The ecological significance of these results is discussed considering the extreme climatic conditions prevailing in this region.     

Ternary copper(II) complexes involving 2-(aminomethyl)-benzimidazole and some bio-relevant ligands. Equilibrium studies and kinetics of hydrolysis for glycine methyl ester under complex formation

Formation equilibria of copper(II) complexes of 2-(aminomethyl)-benzimidazole (AMBI) and the ternary complexes Cu(AMBI)L (L = amino acid, amide, dicarboxylic acid or DNA constituents) have been investigated. Ternary complexes of amino acids or amides are formed by a simultaneous mechanism. Amino acids form the complex Cu(AMBI)L, whereas amides form two complex species Cu(AMBI)L and Cu(AMBI)(LH₋₁). The ternary complexes of copper(II) with AMBI and dicarboxylic acids or DNA units are formed by a stepwise mechanism, whereby binding of copper(II) to AMBI is followed by ligation of the dicarboxylic acids or DNA components. The values of Δ log K indicate that the ternary complexes containing aromatic amino acids are significantly more stable than the complexes containing alkyl- and hydroxyalkyl-substituted amino acids. This may be taken as an evidence for a stacking interaction between the aromatic moiety of AMBI and the aromatic side chains of the bio-active ligands. The solid complexes Cu(AMBI)L where L = 1,1-cyclobutanedicarboxylic acid (CBDCA) and malonic acid were separated and identified by elemental analysis and infrared spectroscopy and magnetic moment. The decomposition course and steps for the isolated complexes were analyzed and the kinetic parameters of the non-isothermal decomposition were calculated. The hydrolysis of glycine methyl ester (MeGly) is catalyzed by the Cu(AMBI)²⁺ complex. The kinetic data is fitted assuming that the hydrolysis reaction proceeds in two steps. The first step, involving coordination of the amino acid ester by the amino and carbonyl groups, is followed by rate-determining attack by OH⁻ ion. The second step involves the equilibrium formation of the hydroxo-complex Cu(AMBI)(MeGly)(OH) followed by intramolecular OH⁻ attack.     

典型冷暖季沉水植物凋落物分解特性及沉积物微生物群落变化

为研究湿地沉水植物腐败分解对水体的污染状况,选择典型沉水植物金鱼藻（暖季植物）和菹草（冷季植物）进行了为期60 d的凋落物分解实验。结果表明金鱼藻和菹草凋落物分解规律相似,0—15 d快速分解,15—60 d缓慢分解,60 d凋落物失重率分别达到60.43%和66.72%。菹草的有机物释放量明显高于金鱼藻,N和P释放量相反,分解释放的N主要是NH4+-N和有机氮。三维荧光光谱（Excitation-Emission Matrix Spectroscopy, EEMs）结合平行因子分析法解析出一种类色氨酸物质C2和3种类腐殖质物质C1、C3、C4,易降解的类色氨酸有机物先增加后减少,难降解的类富里酸和类腐殖酸有机物逐渐增加。EEMs和四种组分的最大荧光强度百分比表明,溶解性有机物（Dissolved organic matter, DOM）在0—15 d以易降解有机物为主,15—60 d以难降解有机物为主。两种植物凋落物分解释放的DOM含量及特性不同,整体上呈低腐殖化特征,可能是水中难降解DOM的一个重要来源。植物凋落物的分解促进了沉积物中微生物的丰富度,降低了微生物的多样性;参与分解的主要微生物包括4 d时的Pseudomonas属（26%—35%）、15 d和30 d时的Malikia属（>8%）和Bacillus属（2.6%—9%）,分解难降解有机物的微生物逐渐增加,如Flavobacterium属;沉积物中微生物群落结构的变化受营养物质可利用性变化的影响。分析发现植物凋落物分解对水质的影响具有阶段性,0—15 d,N和P释放量增加暂时导致了水质恶化;15—60 d,N和P释放量降低,难降解有机物含量逐渐增加,可能会加剧水体甚至是沉积物的腐殖化程度。因此,在植物衰亡期应及时打捞或者做好植物平衡收割管理,避免因植物大量腐败导致水质恶化。     

Enantioselective and nonenantioselective degradation of organic pollutants in the marine ecosystem

Enantiomeric ratios of 11 chiral environmental pollutants determined in different compartments of the marine ecosystem by chiral capillary gas chromatography and chiral high-performance liquid chromatography allow discrimination between the following processes: enantioselective decomposition of both enantiomers with different velocities by marine microorganisms (α-HCH, β-PCCH, γ-PCCH); enantioselective decomposition of one enantiomer only by marine microorganisms (DCPP); enantioselective decomposition by enzymatic processes in marine biota (α-HCH, β-PCCH, trans-chlordane, cis-chlordane, octachlordane MC4, octachlordane MC5, octachlordane MC7, oxychlordane, heptachlor epoxide); enantioselective active transport through the “blood–brain barrier” (α-HCH); nonenantioselective photochemical degradation (α-HCH, β-PCCH). © 1993 Wiley-Liss, Inc.     

Plant palatability to leaf‐cutter ants (Atta laevigata) and litter decomposability in a Neotropical woodland savanna

Although leaf‐cutter ants have been recognized as the dominant herbivore in many Neotropical ecosystems, their role in nutrient cycling remains poorly understood. Here we evaluated the relationship between plant palatability to leaf‐cutter ants and litter decomposability. Our rationale was that if preference and decomposability are related, and if ant consumption changes the abundance of litter with different quality, then ant herbivory could affect litter decomposition by affecting the quality of litter entering the soil. The study was conducted in a woodland savanna (cerrado denso) area in Minas Gerais, Brazil. We compared the decomposition rate of litter produced by trees whose fresh leaves have different degrees of palatability to the leaf‐cutter ant Atta laevigata. Our experiments did not indicate the existence of a significant relationship between leaf palatability to A. laevigata and leaf‐litter decomposability. Although the litter mixture composed of highly palatable plant species showed, initially, a faster decay rate than the mixture of poorly palatable species, this difference was no longer visible after about 6 months. Results were consistent regardless of whether litter invertebrates were excluded or not from litter bags. Similarly, experiments comparing the decomposition rate of litter from pairs of related plant species also showed no association between plant palatability and decomposition. Decomposition rate of the more palatable species was faster, slower or similar to that of the less palatable species depending upon the particular pair of species being compared. We suggest that the traits that mostly influence the decomposition rate of litter produced by cerrado trees may not be the same as those that influence plant palatability to leaf‐cutter ants. Atta laevigata select leaves of different species based – at least in part – on their nitrogen content, but N content was a poor predictor of the decomposition rates of the species we studied.     

凋落物分解主场效应及其土壤生物驱动

凋落物分解主场效应是指凋落物具有在其生长的栖息地比在别的生境分解更快的特征,土壤生物的特化作用被认为是主场效应的产生机理.主场效应是除基质质量和物理化学环境外控制凋落物分解的重要因子,可影响模拟精度的8％.凋落物分解主场效应驱动机制的深入研究对促进分解模型中纳入生物因子,提高区域尺度模拟精度具有重要作用.虽然时间和基质质量可导致主场效应强度变化,但不能全面解释主场效应强度差异特别是负效应的产生.通过分析凋落物分解过程中土壤生物的作用机理,指出凋落物分解主场效应的土壤生物驱动可能包括土壤微生物的调节性适应,土壤动物的后期插入以及物理化学环境的间接影响.为深入了解主场效应土壤生物驱动机制,更好地模拟凋落物分解过程,提出延长凋落物分解交互移置实验时间,拓展实验空间,结合室内模拟分析和构建分解模型等方法与途径.     

Decomposition of three halophytes in different habitats of an eastern scheldt salt marsh

Summary A 20.5-month study was undertaken to determine detrital processing of the halophytesSpartina anglica, Elytrigia pungens, andHalimione portulacoides in three different habitats of an estuarine salt marsh in the South-West Netherlands. Decomposition was measured using litter-bags of three different mesh sizes to partition the effects of different faunal groups on decomposition. From April 1980 through October 1981 litter-bags were sampled regulary from a creek, the upper marsh, and from a plant-debris belt on the higher marsh. Dry weights and nutritive values were measured and animals were counted. Mainly rates of loss are reported here. Zonal differences were significant. At first, decomposition in the creek was most rapid. After two months the processes in the creek slowed down because of the trapping of silt by the bags, which probably simulated the natural course of the decomposition process in the water. Decomposition on the marsh followed the most regular pattern, while in the plant-debris belt the pattern was very irregular. Population dynamics of microfaunal organisms supported these findings. In the plant-debris belts loss rates seem to be higher than on the marsh, because of the influence of detritivorous macrofaunal organisms. The loss rates of the three plant species differed significantly.Halimione decomposed fastest, especially in the beginning, and in the plant-debris habitat. On the upper marsh and in the plant-debris belt the loss rates ofSpartina seem to be a little higher than those ofElytrigia.Communication No. 233, Delta Institute for Hydrobiological Research, Yerseke, The Netherlands.     

Metagenomic analysis of historical herbarium specimens reveals a postmortem microbial community

Advances in DNA extraction and next‐generation sequencing have made a vast number of historical herbarium specimens available for genomic investigation. These specimens contain not only genomic information from the individual plants themselves, but also from associated microorganisms such as bacteria and fungi. These microorganisms may have colonized the living plant (e.g., pathogens or host‐associated commensal taxa) or may result from postmortem colonization that may include decomposition processes or contamination during sample handling. Here we characterize the metagenomic profile from shotgun sequencing data from herbarium specimens of two widespread plant species (Ambrosia artemisiifolia and Arabidopsis thaliana) collected up to 180 years ago. We used blast searching in combination with megan and were able to infer the metagenomic community even from the oldest herbarium sample. Through comparison with contemporary plant collections, we identify three microbial species that are nearly exclusive to herbarium specimens, including the fungus Alternaria alternata, which can comprise up to 7% of the total sequencing reads. This species probably colonizes the herbarium specimens during preparation for mounting or during storage. By removing the probable contaminating taxa, we observe a temporal shift in the metagenomic composition of the invasive weed Am. artemisiifolia. Our findings demonstrate that it is generally possible to use herbarium specimens for metagenomic analyses, but that the results should be treated with caution, as some of the identified species may be herbarium contaminants rather than representing the natural metagenomic community of the host plant.     

Macroalgal decomposition: Laboratory studies with particular regard to microorganisms and meiofauna

The microbial degradation of North Sea macroalgae was studied in laboratory microcosms, containing autoclaved seawater and a mixture of equal parts of air-driedDelesseria sanguinea, Ulva lactuca, andLaminaria saccharina (red, green and brown algae, respectively). To determine the influence of different organisms on the decomposition rate (expressed in terms of algal dry weight loss relative to the material present at time zero) and their development during decomposition processes, yeast, flagellates, ciliates, nematodes and a harpacticoid copepod species were introduced to the microcosms. Results show that microbial degradation compared to the controls was enhanced in the presence of non-axenic nematodes (Monhystera sp.) and protozoans, including bacterivorous ciliates (Euplotes sp. and aUronema-like sp.) and flagellates. No enhancement occurred with yeast (Debaryomyces hansenii) or with the harpacticoid copepodTisbe holothuriae. The most rapid algal dry weight loss (78.7% after 14 d at 18°C) occurred with the addition of raw seawater sampled near benthic algal vegetation and containing only the natural microorganisms present. These consisted mainly of bacteria with different morphological properties, whereby their numbers alone (viable counts) could not be correlated with algal dry weight loss. Although no single dominant species could be determined, lemon yellow pigmented colonies were frequently found. During decomposition in all microcosms the formation of algal particles 40–400 μm was observed, which were rapidly colonized by the other organisms present.     

Interenvironmental Transfer of Microorganisms on the Exterior Surfaces of Jet Aircraft

The likelihood of microorganisms being transferred to new environments by jet aircraft was investigated. Initial random sampling of the aircraft surface revealed the presence of microorganisms in varying numbers on different aerodynamic surfaces. Bacteria of the genus Bacillus were the most common isolates, comprising approximately one-third of the total organisms found. The most frequently isolated fungi were Cladosporium, Alternaria, Penicillium, and several yeasts. Sampling of surfaces before and immediately after a flight demonstrated that microorganisms were collected during flight in areas protected from the airstream and lost in those areas directly exposed to it. These experiments also showed that the majority of the organisms contaminating the aircraft were acquired from the air at ground level. The placement of microorganisms on the aircraft surface before a flight and determination of their survival after flight indicated that the test organisms were most likely to be transported in the areas protected from the airstream. The organisms showing the best chance of being transferred seem to be the sporeforming bacteria, arthrospore-forming fungi, and some yeasts. All phases of this work showed that microorganisms could be carried by jet aircraft to environments they could not reach by natural means of dispersal.     

The effect of reindeer grazing on decomposition, mineralization and soil biota in a dry oligotrophic Scots pine forest

Reindeer grazing in the Fennoscandian area has a considerable influence on the ground vegetation, and this is likely in turn to have important consequences for the soil biota and decomposition processes. The effects of reindeer grazing on soil biota, decomposition and mineralization processes, and ecosystem properties in a lichen‐dominated forest in Finnish Lapland were studied inside and outside a large long term fenced reindeer exclosure area. Decomposition rates of Vaccinium myrtillus leaves in litter bags were retarded in the grazed area relative to the ungrazed area, as well as in subplots from which lichens had been artificially removed to simulate grazing. The effect of reindeer grazing on soil respiration and microbial C was positive in the lichen and litter layers of the soil profile, but retarded in the humus layer. There was no effect of grazing on gross N mineralization and microbial biomass N in the humus and upper mineral soil layer, but net N mineralization was increased by grazing. In these layers soil respiration was reduced by grazing, indicating that reindeer effects reduce the ratio of C to N mineralized by soil microorganisms. Grazing stimulated populations of all trophic groupings of nematodes in the lichen layer and microbe feeding nematodes in the litter layer, indicating that grazing by reindeer has multitrophic effects on the decomposer food‐web. Grazing decreased lichen and dwarf shrub biomasses and increased the mass of litter present in the litter layer on an areal basis, but did not significantly alter total C storage per unit area in the humus and mineral soil layers. The N concentration of lichens was increased by grazing, but the N concentrations of both living and dead Pinus sylvestris needles and Empetrum hermaphroditum leaves were not affected.
There was some evidence for each of three mechanisms which could account for the grazing effects that we observed in our study. Firstly, reindeer may have changed the composition and quality of litter input by affecting plant species composition and through addition of N from urine and faeces, resulting in a lack of available C relative to N for decomposer organisms. Secondly, the organic matter in the soil may be older in the grazed area, because of reduction of recent production of lichen litter relative to the ungrazed area. The organic matter in the grazed area may have been in a different phase of decomposition from that in the exclosure. Thirdly, the soil microclimate is likely to be affected by reindeer grazing through physical removal of lichen cover on the ground, and this can have a significant influence on soil microbial processes. This is supported by the strong observed effects of experimental removal of lichens on decomposer processes. The impact of reindeer grazing on soil processes may be a result of complex interactions between different mechanisms, and this could help to explain why the below‐ground effects of reindeer grazing have different consequences to those which have been observed in recent investigations on other grazing systems.     

Fine root decomposition rates do not mirror those of leaf litter among temperate tree species

Elucidating the function of and patterns among plant traits above ground has been a major research focus, while the patterns and functioning of belowground traits remain less well understood. Even less well known is whether species differences in leaf traits and their associated biogeochemical effects are mirrored by differences in root traits and their effects. We studied fine root decomposition and N dynamics in a common garden study of 11 temperate European and North American tree species (Abies alba, Acer platanoides, Acer pseudoplatanus, Carpinus betulus, Fagus sylvatica, Larix decidua, Picea abies, Pseudotsuga menziesii, Quercus robur, Quercus rubra and Tilia cordata) to determine whether leaf litter and fine root decomposition rates are correlated across species as well as which species traits influence microbial decomposition above versus below ground. Decomposition and N immobilization rates of fine roots were unrelated to those of leaf litter across species. The lack of correspondence of above- and belowground processes arose partly because the tissue traits that influenced decomposition and detritus N dynamics different for roots versus leaves, and partly because influential traits were unrelated between roots and leaves across species. For example, while high hemicellulose concentrations and thinner roots were associated with more rapid decomposition below ground, low lignin and high Ca concentrations were associated with rapid aboveground leaf decomposition. Our study suggests that among these temperate trees, species effects on C and N dynamics in decomposing fine roots and leaf litter may not reinforce each other. Thus, species differences in rates of microbially mediated decomposition may not be as large as they would be if above- and belowground processes were working in similar directions (i.e., if faster decomposition above ground corresponded to faster decomposition below ground). Our results imply that studies that focus solely on aboveground traits may obscure some of the important mechanisms by which plant species influence ecosystem processes.     

Aphids decelerate litter nitrogen mineralisation through changes in litter quality

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叶际微生物研究进展

植物的叶际是一个复杂的生态系统,微生物的生存环境条件严苛。其可被利用的营养成分较少,温湿度波动大。此外,较强的紫外线辐射对于叶际微生物的生存也有很大影响。但是植物叶际却有着丰富的微生物多样性,其中还有许多有益细菌和真菌。它们通过和植物寄主的互作,改善着叶际微生物的栖居环境;其对植物病原体的拮抗亦可提高植物的抗病性。植物叶际的微生物还可以产生激素以促进植物生长,还有一些微生物可以利用农药等污染有机物作为营养物质,在污染物的环境生物修复方面显示巨大的潜力。此外,叶际微生物作为一种生态学指标在生态稳定与环境安全评价中开始发挥显著的作用。     

Influence of soil organic matter decomposition on arbuscular mycorrhizal fungi in terms of asymbiotic hyphal growth and root colonization

Soil organic matter is known to influence arbuscular mycorrhizal (AM) fungi, but limited information is available on the chemical components in the organic matter causing these effects. We studied the influence of decomposing organic matter (pure cellulose and alfalfa shoot and root material) on AM fungi after 30, 100, and 300 days of decomposition in nonsterile soil with and without addition of mineral N and P. Decomposing organic matter affected maize root length colonized by the AM fungus Glomus claroideum in a similar manner as other plant growth parameters. Colonized root length was slightly increased by both nitrogen and phosphorus application and plant materials, but not by application of cellulose. In vitro hyphal growth of Glomus intraradices was increased by soil extracts from the treatments with all types of organic materials independently of mineral N and P application. Pyrolysis of soil samples from the different decomposition treatments revealed in total 266 recognizable organic compounds and in vitro hyphal growth of G. intraradices in soil extract positively correlated with 33 of these compounds. The strongest correlation was found with 3,4,5-trimethoxybenzoic acid methyl ester. This compound is a typical product of pyrolysis of phenolic compounds produced by angiosperm woody plants, but in our experiment, it was produced mainly from cellulose by some components of the soil microflora. In conclusion, our results indicate that mycelia of AM fungi are influenced by organic matter decomposition both via compounds released during the decomposition process and also by secondary metabolites produced by microorganisms involved in organic matter decomposition.     

Characteristics and adaptability of iron- and sulfur-oxidizing microorganisms used for the recovery of metals from minerals and their concentrates

Microorganisms are used in large-scale heap or tank aeration processes for the commercial extraction of a variety of metals from their ores or concentrates. These include copper, cobalt, gold and, in the past, uranium. The metal solubilization processes are considered to be largely chemical with the microorganisms providing the chemicals and the space (exopolysaccharide layer) where the mineral dissolution reactions occur. Temperatures at which these processes are carried out can vary from ambient to 80°C and the types of organisms present depends to a large extent on the process temperature used. Irrespective of the operation temperature, biomining microbes have several characteristics in common. One shared characteristic is their ability to produce the ferric iron and sulfuric acid required to degrade the mineral and facilitate metal recovery. Other characteristics are their ability to grow autotrophically, their acid-tolerance and their inherent metal resistance or ability to acquire metal resistance. Although the microorganisms that drive the process have the above properties in common, biomining microbes usually occur in consortia in which cross-feeding may occur such that a combination of microbes including some with heterotrophic tendencies may contribute to the efficiency of the process. The remarkable adaptability of these organisms is assisted by several of the processes being continuous-flow systems that enable the continual selection of microorganisms that are more efficient at mineral degradation. Adaptability is also assisted by the processes being open and non-sterile thereby permitting new organisms to enter. This openness allows for the possibility of new genes that improve cell fitness to be selected from the horizontal gene pool. Characteristics that biomining microorganisms have in common and examples of their remarkable adaptability are described.     

Topology and life: In search of general mathematical principles in biology and sociology

Mathematical biology has hitherto emphasized the quantitative, metric aspects of the physical manifestations of life, but has neglected the relational or positional aspects, which are of paramount importance in biology. Although, for example, the processes of locomotion, ingestion, and digestion in a human are much more complex than in a protozoan, the general relations between these processes are the same in all organisms. To a set of very complicated digestive functions of a higher animal there correspond a few simple functions in a protozoan. In other words, the more complicated processes in higher organisms can be mapped on the simpler corresponding processes in the lower ones. If any scientific study of this aspect of biology is to be possible at all, there must exist some regularity in such mappings. We are, therefore, led to the following principle: If the relations between various biological functions of an organism are represented geometrically in an appropriate topological space or by an appropriate topological complex, then the spaces or complexes representing different organisms must be obtainable by a proper transformation from one or very fewprimordial spaces or complexes. The appropriate representation of the relations between the different biological functions of an organism appears to be a one-dimensional complex, or graph, which represents the “organization chart” of the organism. The problem then is to find a proper transformation which derives from this graph the graphs of all possible higher organisms. Both a primordial graph and a transformation are suggested and discussed. Theorems are derived which show that the basic principle of mapping and the transformation have a predictive value and are verifiable experimentally. These considerations are extended to relations within animal and human societies and thus indicate the reason for the similarities between some aspects of societies and organisms. It is finally suggested that the relation between physics and biology may lie on a different plane from the one hitherto considered. While physical phenomena are the manifestations of the metric properties of the four-dimensional universe, biological phenomena may perhaps reflect some local topological properties of that universe.