共查询到20条相似文献,搜索用时 15 毫秒
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In an effort to increase our understanding of the molecular rearrangements that occur during lipid bilayer fusion, we have used different fluorescent probes to characterize the lipid rearrangements associated with poly(ethylene glycol) (PEG)-mediated fusion of DOPC:DL(18:3)PC (85:15) small, unilamellar vesicles (SUVs). Unlike in our previous studies of fusion kinetics [Lee, J., and Lentz, B. R., Biochemistry 36, 6251-6259], these vesicles have mean diameters of 20 nm compared to 45 nm. Surprisingly, we found significant inter-vesicle lipid mixing at 5 wt % PEG, well below the PEG concentration required (17.5 wt %) for vesicles fusion. Lipid movement rate between bilayers (or inter-leaflet movement) increased abruptly at 10 wt % PEG, and the rate of lipid mixing increased thereafter with increasing amounts of PEG. The characteristic time of lipid mixing between outer leaflets (tau approximately equal to 24 s) was comparable to that observed at and above PEG concentrations needed to induce fusion (17.5 wt %) of either 20 or 45 nm vesicles. We also found that slower lipid mixing (tau approximately equal to 267 s) between fusing vesicles occurred on the same time scale or slightly faster than vesicle contents mixing (tau approximately equal to 351 s). In addition, our measurements showed that lipids redistributed across the bilayer on a time scale just slightly faster than pore formation (tau approximately equal to 217 s). This is the first demonstration of trans-bilayer movement of lipids during fusion. We also found that water was excluded from the bilayer (tau approximately equal to 475 s) during product maturation. These observations suggest that fusion in smaller vesicles (approximately 20 nm) proceeds via a multistep mechanism similar to that we reported for somewhat larger vesicles, except that two intermediates are no longer clearly resolved. 相似文献
3.
Toyota E Ogasawara Y Hiramatsu O Tachibana H Kajiya F Yamamori S Chilian WM 《American journal of physiology. Heart and circulatory physiology》2005,288(4):H1598-H1603
The subendocardium is the most vulnerable area of the left ventricle to the effects of hypoperfusion and ischemia. Despite this well-acknowledged observation, the mechanisms underlying this susceptibility are not elucidated, although numerous explanations including differences in transmural distribution of hemodynamics, metabolism, and wall stresses have been proposed. Our goal was to make dynamic measurements of endocardial and epicardial flow velocities, which reflect hemodynamic and wall stresses, to approach this problem. We measured blood flow velocities in subendocardial and subepicardial coronary arterioles of in vivo beating canine hearts using a high-speed, charge-coupled device, intravital videomicroscope with a rod-probe lens. Subendocardial flow was characterized by remarkable systolic flow-velocity reversal (systolic slosh ratio, 84%; measurable velocity of retrograde flow, faster than -40 mm/s), which contrasted to predominant forward-flow velocity during systole in the subepicardial arterioles (systolic slosh ratio, 25%; maximum velocity, approximately -20 mm/s; P < 0.0005 and 0.05 vs. subendocardial arterioles, respectively). We speculate that this retrograde flow is "wasteful," because this volume must be refilled during the subsequent diastole, which thereby detracts from the net perfusion as well as the time for perfusion. Accordingly, we also believe that the retrograde systolic blood flow contributes to the vulnerability of the subendocardium to ischemia. 相似文献
4.
S E Rittgers D Y Fei K A Kraft P P Fatouros P R Kishore 《Journal of biomechanical engineering》1988,110(3):180-184
A time-of-flight MRI velocity measurement technique is evaluated against corresponding LDV measurements in a constriction tube model over a range of physiologic flow conditions. Results from this study show that MR displacement images can: 1) be obtained within both laminar and turbulent jets (maximum stenotic Re approximately equal to 4,200), 2) measure mean jet velocities up to 172 cm/s, and, 3) detect low forward and reverse stenosis (0 less than or equal to L/D less than or equal to 2). Regions between the jet termination point and re-establishment of laminar flow (Re greater than or equal to 1500, greater than or equal to 1000, and greater than or equal to 110 downstream of 40, 60, and 80 percent stenosis, respectively) cannot presently be detected by this technique. 相似文献
5.
Sandra Mitic Jan W. van Nieuwkasteele Albert van den Berg Simon de Vries 《Analytical biochemistry》2015
Unravelling (bio)chemical reaction mechanisms and macromolecular folding pathways on the (sub)microsecond time scale is limited by the time resolution of kinetic instruments for mixing reactants and observation of the progress of the reaction. To improve the mixing time resolution, turbulent four- and two-jet tangential micro-mixers were designed and characterized for their mixing and (unwanted) premixing performances employing acid–base reactions monitored by a pH-sensitive fluorescent dye. The mixing performances of the micro-mixers were determined after the mixing chamber in a free-flowing jet. The premixing behavior in the vortex chamber was assessed in an optically transparent glass–silicon replica of a previously well-characterized stainless-steel four-jet tangential micro-mixer. At the highest flow rates, complete mixing was achieved in 160 ns with only approximately 9% premixing of the reactants. The mixing time of 160 ns is at least 50 times shorter than estimated for other fast mixing devices. Key aspects to the design of ultrafast turbulent micro-mixers are discussed. The integration of these micro-mixers with an optical flow cell would enable the study of the very onset of chemical reactions in general and of enzyme catalytic reactions in particular. 相似文献
6.
The purpose of this research was to further investigate the hydrodynamics of the United States Pharmacopeia (USP) paddle dissolution
apparatus using a previously generated computational fluid dynamics (CFD) model. The influence of paddle rotational speed
on the hydrodynamics in the dissolution vessel was simulated. The maximum velocity magnitude for axial and tangential velocities
at different locations in the vessel was found to increase linearly with the paddle rotational speed. Path-lines of fluid
mixing, which were examined from a central region at the base of the vessel, did not reveal a region of poor mixing between
the upper cylin-drical and lower hemispherical volumes, as previously speculated. Considerable differences in the resulting
flow patterns were observed for paddle rotational speeds between 25 and 150 rpm. The approximate time required to achieve
complete mixing varied between 2 to 5 seconds at 150 rpm and 40 to 60 seconds at 25 rpm, although complete mixing was achievable
for each speed examined. An analysis of CFD-generated velocities above the top surface of a cylindrical compact positioned
at the base of the vessel, below the center of the rotating paddle, revealed that the fluid in this region was undergoing
solid body rotation. An examination of the velocity boundary layers adjacent to the curved surface of the compact revealed
large peaks in the shear rates for a region within∼3 mm from the base of the compact, consistent with a ‘grooving’ effect,
which had been previously seen on the surface of compacts following dissolution, associated with a higher dissolution rate
in this region. 相似文献
7.
Todd Nikolof Mahesh Prakash Paul W Cleary Joseph Bertolini 《Biotechnology progress》2013,29(2):359-367
The manufacture of plasma‐derived therapeutics includes dedicated viral inactivation steps to minimize the risk of infection. Traditional viral inactivation methods are effective for the removal and inactivation of enveloped viruses, but less effective against small nonenveloped viruses. UV‐C irradiation has been demonstrated to be an effective means of inactivating such viruses. The UVivatec lab system consists of a spiral tube around an UV‐C irradiation source. Flow of a solution through the chamber generates and ensures controlled mixing and uniform exposure to irradiation. A detailed assessment of the effect of flow rate, alternate cross sectional design and scale up of the irradiation chamber on Dean vortices was performed using the smoothed particle hydrodynamics method. The aim was to provide a basis for setting flow rate limits and using a laboratory scale apparatus to model viral inactivation in larger manufacturing scale equipment. The effect of flow rate related changes on the fluence rate was also investigated through chemical actinometry studies. The data were consistent with the simulations indicating that Dean vortices were present at low flow rates, but dissipated at higher flow rates through the spiral chamber. Importantly, this work also allowed a correlation between the small system and large scale system to be established. This will greatly facilitate process development and viral validation studies. © 2013 American Institute of Chemical Engineers Biotechnol. Prog., 29: 359–367, 2013 相似文献
8.
Mautner T 《Biosensors & bioelectronics》2004,19(11):1409-1419
The concept of macro scale synthetic jets has been applied to the low Reynolds number (Re=10), two-dimensional channel flows which may be found in biosensor microfluidic systems. The current numerical investigation utilizes a hybrid approach of the lattice Boltzmann (LB) method for flow field computations and a finite-difference, convection-diffusion equation for passive scalar transport. The study presents the modified main channel flow results for various wall jet geometries (derived from synthetic jets), jet inlet conditions, scaling issues and Reynolds numbers. The results indicate limited effects due to jet cavity-slot geometry, and that the forced jet imparts momentum to the channel flow thus enhancing fluid mixing. 相似文献
9.
Turbulent jets in endotracheal tubes induce air entrainment and airway pressure changes. We attempted to understand the physical explanation for these effects, which open up to a wide range of applications in intubated patients. An in vitro study was performed on standard size endotracheal tubes with diameters of 8, 7, and 3 mm and several capillaries molded into the wall (less than 1 mm diam) allowing gas injection at approximately 1-2 cm from the tracheal end of the endotracheal tube. This produced a jet velocity-dependent gain in tracheal pressure (Ptr) during inspiration. Data have been interpreted with a theory, based on the classic momentum theorem, which indicates that the mechanisms involved resemble those of axisymmetrical confined jets: air entrainment by turbulent friction with a longitudinal increase in lateral pressure. The difference with axisymmetrical systems lies in the nonconservation of the total thrust in our system because, secondary to wall friction and to the nonaxial incidence of the jets, only a fraction of the jet momentum flux is transformed into pressure. This suggests faster mixing in the present lateral jet system, as shown by 1) the independence of Ptr on tracheal geometry and 2) the very rapid increase in lateral pressure. The present study supports the idea that pressure changes in the airways, which are potentially beneficial in intubated patients, can be satisfactorily generated by turbulent jets. 相似文献
10.
S. N. Polukhin A. M. Dzhamankulov A. E. Gurei V. Ya. Nikulin E. N. Peregudova P. V. Silin 《Plasma Physics Reports》2016,42(12):1127-1133
The velocities of the plasma jets formed from Ne, N2, Ar, and Xe gases in plasma focus facilities were determined by means of laser-optical shadowgraphy of the shock waves generated at the jet leading edge. In spite of the almost tenfold ratio between the atomic weights of these gases, the outflow velocities of the plasma jets formed in experiments with these gases differ by less than twice, in the range of (0.7–1.1) × 107 cm/s under similar discharge conditions. The energies of the jet ions were found to vary from 0.7 keV for nitrogen to 4 keV for xenon. 相似文献
11.
We present a kinetic model for the walking of myosin V on actin under conditions of zero external force. The model includes three pathways and the termination of the processivity. Experimentally measured kinetic parameters are used in the model to obtain quantitative results. Using the model and associated parameters, we compute the proportion of the pathway containing an intermediate state, as well as the walking velocities and run lengths at various concentrations of ATP and ADP. The resulting trends agree with experimental data. The model explains the surprising experimental finding that myosin walks at a faster speed but for a shorter distance as the ATP concentration increases in the absence of ADP. It also suggests that under physiological condition ([ADP] approximately 12-50 microM), myosin walks with a higher speed and for longer distances when ATP is more abundant. 相似文献
12.
Pratt MC 《Integrative and comparative biology》2008,48(6):808-822
Bryozoans are suspension feeding colonial animals that remain attached to the substratum or other surfaces. How well a bryozoan can feed in a particular flow regime could help determine the distribution and abundance of that bryozoan. I tested how velocity of flow affects feeding rate in four species of bryozoans in the laboratory and how these species perform in different flow regimes in the field. I found that one species, Membranipora membranacea, had a higher ingestion rate than did the other three species at all velocities of flow tested. Membranipora also had a higher rate of ingestion at intermediate velocities, while velocity did not have as strong an effect on ingestion rate in the other three species. As predicted from the feeding experiments, all four species generally had greater abundance, attained a larger size, grew faster, and survived longer in flow regimes in which feeding is higher. Also as predicted, Membranipora had greater abundance, attained a larger size, grew faster, and survived longer than did the other three species both in slower and faster flow regimes in the field. Understanding how flow affects feeding can help predict the distribution and abundance of bryozoans in the field. Because especially efficient filterers like Membranipora can grow faster and have higher survival under a wide range of conditions of flow, this species may be able to outcompete many other species or take advantage of ephemeral habitats, thereby becoming a potentially effective invasive species as has been seen in the Gulf of Maine. 相似文献
13.
Which are the polyphosphate accumulating organisms in full-scale activated sludge enhanced biological phosphate removal systems in Australia? 总被引:1,自引:0,他引:1
AIMS: To see if the compositions of the microbial communities in full scale enhanced biological phosphorus removal activated sludge systems were the same as those from laboratory scale sequencing batch reactors fed a synthetic sewage. METHODS: Biomass samples taken from nine full scale enhanced biological phosphate removal (EBPR) activated sludge plants in the eastern states of Australia were analysed for their populations of polyphosphate (polyP)-accumulating organisms (PAO) using semi-quantitative fluorescence in situ hybridization (FISH) in combination with DAPI (4'-6-diamidino-2-phenylindole) staining for polyP. RESULTS: Very few betaproteobacterial Rhodocyclus related organisms could be detected by FISH in most of the plants examined, and even where present, not all these cells even within a single cluster, stained positively for polyP with DAPI. In some plants in samples from aerobic reactors the Actinobacteria dominated populations containing polyP. CONCLUSIONS: The PAO populations in full-scale EBPR systems often differ to those seen in laboratory scale reactors fed artificial sewage, and Rhodocyclus related organisms, dominating these latter communities may not be as important in full-scale systems. Instead Actinobacteria may be the major PAO. SIGNIFICANCE AND IMPACT OF THE STUDY: These findings illustrate how little is still known about the microbial ecology of EBPR processes and that more emphasis should now be placed on analysis of full-scale plants if microbiological methods are to be applied to monitoring their performances. 相似文献
14.
Mitsuharu Terashima Rajeev Goel Kazuya Komatsu Hidenari Yasui Hiroshi Takahashi Y.Y. Li Tatsuya Noike 《Bioresource technology》2009,100(7):2228-2233
A three-dimensional CFD model incorporating the rheological properties of sludge was developed and applied to quantify mixing in a full-scale anaerobic digester. The results of the model were found to be in good agreement with experimental tracer response curve. In order to predict the dynamics of mixing, a new parameter, UI (uniformity index) was defined. The visual patterns of tracer mixing in simulation were well reflected in the dynamic variation in the value of UI. The developed model and methods were applied to determine the required time for complete mixing in a full-scale digester at different solid concentrations. This information on mixing time is considered to be useful in optimizing the feeding cycles for better digester performance. 相似文献
15.
Robust design of a dead end filtration step and the resulting performance at manufacturing scale relies on laboratory data collected with small filter units. During process development it is important to characterize and understand the filter fouling mechanisms of the process streams so that an accurate assessment can be made of the filter area required at manufacturing scale. Successful scale-up also requires integration of the lab-scale filtration data with an understanding of flow characteristics in the full-scale filtration equipment. A case study is presented on the development and scale-up of a depth filtration step used in a 2nd generation polysaccharide vaccine manufacturing process. The effect of operating parameters on filter performance was experimentally characterized for a diverse set of process streams. Filter capacity was significantly reduced when operating at low fluxes, caused by both low filtration pressure and high stream viscosity. The effect of flux on filter capacity could be explained for a variety of diverse streams by a single mechanistic model of filter fouling. To complement the laboratory filtration data, the fluid flow and distribution characteristics in manufacturing-scale filtration equipment were carefully evaluated. This analysis identified the need for additional scale-up factors to account for non-uniform filter area usage in large-scale filter housings. This understanding proved critical to the final equipment design and depth filtration step definition, resulting in robust process performance at manufacturing scale. 相似文献
16.
《Ecological Engineering》2007,29(1):33-44
Prior investigations have examined steady-state flow in surface flow treatment wetlands, with mixing modeled as advection-dominated, and reaction calculated using flow-weighted averages over collections of stream tubes with different velocities. This work extends these concepts to non-steady flow conditions and temporally varying inlet concentrations. The essential construct that makes the approach feasible is definition of a set of reference (steady) state conditions under which the residence time distribution (RTD) and stream-tube specific rate constants are defined. Residence time in any stream tube under non-steady flow is treated as a linear function of its reference-condition residence time, and the overall wetland retention time under both mean and varying flow regimes. Outlet concentration is found by convolution of the reaction term with a varying inlet concentration function. For real-world flow and concentration data collected at discrete points in time, integration for outlet concentration is approximated using linear interpolation to generate inlet concentrations and velocities at intermediate points in time. The approach is examined using data from the literature. Vegetation density and depth distributions are seen as central in determining mixing and treatment performance. 相似文献
17.
I J Stratford R L Maughan B D Michael A Tallentire 《International journal of radiation biology and related studies in physics, chemistry, and medicine》1977,32(5):447-455
Using a stopped-flow mixing and pulsed irradiation apparatus, a study has been made of the decay, to a harmless form, of radiation-induced species which would otherwise be lethal to spores on contact with oxygen. Aqueous suspensions of Bacillus megaterium spores were irradiated with 600 krad of electrons given over approximately 1 s; at various times after irradiation oxygen in solution was added. As the interval between irradiation and introduction of oxygen increased, the fraction of spores surviving increased. For spores irradiated in a deoxygenated condition the decay of the potentially lethal species, reflected by this change in survival, proceeded as if two parallel first-order reactions with half-lives of 9 and 120 s operate. In contrast, for spores equilibrated with oxygen and then irradiated, the decay is described by a single first-order expression with an associated half-life similar to that of the faster of the two reactions operating in anoxia. 相似文献
18.
The sucked-flow analyser is a modified stopped-flow apparatus for automatic measurements of initial rates of enzyme reactions at varying concentrations of substrate or inhibitor. The flow through the system is driven by a water suction pump and regulated by magnetic valves. Sample and reagent solution are aspired through tubes whose resistances to laminar flow determine a precise ratio of mixing in the observation cell. A minicomputer controls all operations, collects the data and calculates the results. Measurements on teh β-galactosidase and the cytochome P-450 reactions are presented. 相似文献
19.
Blood damage and thrombosis are major complications that are commonly seen in patients with implanted mechanical heart valves. For this in vitro study, we isolated the closing phase of a bileaflet mechanical heart valve to study near valve fluid velocities and stresses. By manipulating the valve housing, we gained optical access to a previously inaccessible region of the flow. Laser Doppler velocimetry and particle image velocimetry were used to characterize the flow regime and help to identify the key design characteristics responsible for high shear and rotational flow. Impact of the closing mechanical leaflet with its rigid housing produced the highest fluid stresses observed during the cardiac cycle. Mean velocities as high as 2.4 m/s were observed at the initial valve impact. The velocities measured at the leaflet tip resulted in sustained shear rates in the range of 1500-3500 s(-1), with peak values on the order of 11,000-23,000 s(-1). Using velocity maps, we identified regurgitation zones near the valve tip and through the central orifice of the valve. Entrained flow from the transvalvular jets and flow shed off the leaflet tip during closure combined to generate a dominant vortex posterior to both leaflets after each valve closing cycle. The strength of the peripheral vortex peaked within 2 ms of the initial impact of the leaflet with the housing and rapidly dissipated thereafter, whereas the vortex near the central orifice continued to grow during the rebound phase of the valve. Rebound of the leaflets played a secondary role in sustaining closure-induced vortices. 相似文献
20.
T Egawa T Ogura R Makino Y Ishimura T Kitagawa 《The Journal of biological chemistry》1991,266(16):10246-10248
Dioxygen stretching (voo) Raman band was observed for the oxy form of Pseudomonas putida cytochrome P-450 (P-450cam) generated at room temperature under catalytic conditions, that is, in the presence of D-camphor, beta-NADH, putidaredoxin, and putidaredoxin reductase, by using the mixed flow transient Raman apparatus. At the same time the visible absorption spectra were monitored for the transient species. It was found that the voo frequency is little altered by binding of putidaredoxin to P-450cam, although the reduction rate of the oxy form becomes faster. Another intermediate with an oxygen isotope-sensitive band was not found in a time region until 2 s after mixing of the reduced enzyme with oxygen. 相似文献