Contribution of Sediment Respiration to Summer CO2 Emission from Low Productive Boreal and Subarctic Lakes

We measured sediment production of carbon dioxide (CO₂) and methane (CH₄) and the net flux of CO₂ across the surfaces of 15 boreal and subarctic lakes of different humic contents. Sediment respiration measurements were made in situ under ambient light conditions. The flux of CO₂ between sediment and water varied between an uptake of 53 and an efflux of 182 mg C m⁻² day⁻¹ from the sediments. The mean respiration rate for sediments in contact with the upper mixed layer (SedR) was positively correlated to dissolved organic carbon (DOC) concentration in the water (r² = 0.61). The net flux of CO₂ across the lake surface [net ecosystem exchange (NEE)] was also closely correlated to DOC concentration in the upper mixed layer (r² = 0.73). The respiration in the water column was generally 10-fold higher per unit lake area compared to sediment respiration. Lakes with DOC concentrations <5.6 mg L⁻¹ had net consumption of CO₂ in the sediments, which we ascribe to benthic primary production. Only lakes with very low DOC concentrations were net autotrophic (<2.6 mg L⁻¹) due to the dominance of dissolved allochthonous organic carbon in the water as an energy source for aquatic organisms. In addition to previous findings of allochthonous organic matter as an important driver of heterotrophic metabolism in the water column of lakes, this study suggests that sediment metabolism is also highly dependent on allochthonous carbon sources.     

Net heterotrophy in Faroe Islands clear-water lakes: causes and consequences for bacterioplankton and phytoplankton

1. Five oligotrophic clear‐water lakes on the Faroe Islands were studied during August 2000. Algal and bacterial production rates, community respiration, and CO₂ saturation were determined. In addition, we examined the plankton community composition (phytoplankton and heterotrophic nanoflagellates) and measured the grazing pressure exerted by common mixotrophic species on bacteria. 2. High respiration to primary production (6.6–33.2) and supersaturation of CO₂ (830–2140 μatm) implied that the lakes were net heterotrophic and that the pelagic heterotrophic plankton were subsidised by allochthonous organic carbon. However, in spite of the apparent high level of net heterotrophy, primary production exceeded bacterial production and the food base for higher trophic levels appeared to be mainly autotrophic. 3. We suggest that the observed net heterotrophy in these lakes was a result of the oligotrophic conditions and hence low primary production in combination with an input of allochthonous C with a relatively high availability. 4. Mixotrophic phytoplankton (Cryptomonas spp., Dinobryon spp. and flagellates cf. Ochromonas spp.) constituted a large percentage of the plankton community (17–83%), possibly as a result of their capacity to exploit bacteria as a means of acquiring nutrients in these nutrient poor systems.     

Planktonic food chains of a highly humic lake

The development and metabolism of epilimnetic plankton from a highly humic lake was followed in late summer, when the predominant zooplankton species, Daphnia longispina, was very abundant (ca. 200 ind. l^?1). The experiment was made in two tanks: one with an unaltered plankton assemblage and one with larger zooplankton removed. The scarce phytoplankton community was also simple, consisting mainly of one Cryptomonas and two Mallomonas species. The abundance and species composition of smaller plankton was heavily influenced by grazing of Daphnia. In particular, the biomass, of heterotrophic flagellates increased after the removal of Daphnia. The biomass and production of bacterioplankton were not affected, and remained several times higher than that of phytoplankton. Bacterial production and grazing on bacteria were balanced, and when Daphnia was removed its grazing activity was compensated by flagellates. The removal of Daphnia did not affect the respiration or community net production of plankton. Among organisms smaller than zooplankton, bacteria seemed to be responsible for most of the respiration. The community net production was consistently negative even at the water surface, indicating an allochthonous carbon source. The results suggest that phytoplankton primary production was insufficient for the secondary production in the epilimnetic water of the study lake. The food requirements of bacteria and zooplankton, as well as of flagellates, each exceeded that supplied by phytoplankton primary production. The simple food chains in this experiment made it possible to reveal the functioning of the community so completely that dissolved organic matter is certainly comparable to or exceeds the importance of phytoplankton primary production as an energy and carbon source for food webs in this humic lake.     

Internal heterotrophy following the switch from macrophytes to algae in Lake Apopka, Florida

Measurements of photosynthesis and community respiration in Lake Apopka, Florida, U.S.A. indicate that this lake may be heterotrophic, and that the source of extra organic carbon is internal rather than external to the lake. This large and shallow lake (area 124 km², mean depth 1.7 m) was dominated by macrophytes until hurricane-associated winds disrupted the plants in 1947, and the lake switched to a turbid, algal state. A layer of flocculent, organic sediments covers the lakebed to an average depth of 45 cm and winds regularly resuspend the upper portion into the water column. We used the diel oxygen curve method to estimate production and respiration and also reanalyzed the results of five past studies of production in the lake. The production measurements did not support the hypothesis that the flocculent layer represented excess algal production since 1947. Community respiration exceeded gross production on 60 out of 76 days sampled with statistically significant negative net production found in two of the three studies using the light and dark bottle oxygen method. External supplies of organic carbon are relatively small and are balanced by losses through the outlet. If the lake is heterotrophic, the excess respiration is most likely supported by the remains of macrophytes deposited in the sediments prior to the switch to an algal state. Similar sediment oxidation probably occurs in other shallow lakes that switch from the macrophyte to the algal state.     

Horizontal distribution of carbon and nitrogen and their isotopic compositions in the surface sediment of Lake Biwa

The horizontal distribution of the abundance and isotopic composition of carbon and nitrogen was studied on surface sediment samples (0–15 cm) collected from the entire area of Lake Biwa, the largest freshwater lake in Japan. As water depth increased, a marked increase in organic matter content was observed at the sampling sites, especially in the western North Basin, characterized by a steep slope. In the northwestern North Basin, which has no major inflowing streams, the sediments contained large amounts of organic matter, suggesting the possibility of lateral transportation of sedimented matter from other places by lake currents. The total amounts of carbon and nitrogen in the top-2 cm of sediment of the entire area of Lake Biwa were estimated to be 9.2 × 10⁴ tC and 1.0 × 10⁴ tN. The δ¹⁵N values in the littoral sediment were low and close to those in the inflowing river sediment, suggesting selective sedimentation of allochthonous organic matter onto the littoral area. In the North Basin, vertical profiles of organic matter content and δ¹³C values of the sediments in the littoral area showed a smaller downward decrease than in the profundal area, whereas δ¹⁵N values decreased with sediment depth in both areas. It was suggested that the littoral sediments contained abundant amounts of allochthonous and relatively refractory organic matter. Further, it was suggested that the autochthonous organic matter originated from primary production deposited mainly on the profundal zone and was easily decomposed in early diagenesis after sedimentation. Received: July 30, 1999 / Accepted: December 10, 1999     

Phytoplankton, bacterial production and protozoan bacterivory in stratified, brackish-water Lake Shira (Khakasia, Siberia)

Rates of oxygenic and anoxygenic photosynthesis, chemoautotrophic and heterotrophic bacterial production and protozoan bacterivory were measured in the pelagic zone of the stratified brackish-water lake with the purpose to determine the vertical distribution of these processes and to estimate their significance in the functioning of planktonic community of the lake. In midsummer, total daily primary productivity was about 1.3 g C m^–2, of which 72% was produced by the phytoplankton, 24% by the chemoautotrophic bacteria, and only 4% by the phototrophic sulphur bacteria. Thus anoxygenic photosynthesis is a negligible source of organic matter in the lake. The production of heterotrophic bacteria averaged 1.5 g C m^–2 d^–1 and exceeded the total photosynthesis of phytoplankton and photosynthetic bacteria by a factor of 1.5. The estimated total primary production was too low to sustain the bacterial production. Probably the carbon cycle in the lake is dependent on the input of allochthonous organic matter. As a rule, the maximal rates of primary production and heterotrophic bacterial production were found in the chemocline or at the upper boundary of the chemocline. Heterotrophic flagellates dominated among the protozoan populations and were the major consumers of the bacterioplankton production in the lake. They showed maximal ingestion rates from 2.3 to 2.9 mg C m^–3 h^–1 at the upper boundary of the chemocline, where they consumed from 50 to 54% of the production of heterotrophic bacteria. Data obtained indicate that in Lake Shira the oxic-anoxic interface is the site of the most intensive production and mineralization of organic matter.     

Dissolved organic carbon in a humic lake: effects on bacterial production and respiration

Allochthonous matter was the main source of carbon for pelagic bacteria in a humic lake, accounting for almost 90% of the carbon required to support observed bacterial growth. The estimated contribution from zooplankton excretion was of the same magnitude as direct phytoplankton release, both accounting for 5–7% of bacterial demands for dissolved carbon. Bacteria were an important source of carbon both for heterotrophic phytoplankton and for filter feeding zooplankton species, further stressing the role of humus DOC in overall lake productivity. The high contribution of allochthonous DOC implies a stoichiometry of dissolved nutrients with a surplus of C relative to P. The high P cell quota of bacteria suggest that under such conditions they are P-limited and act like net consumers of P. Excess C will be disposed of, and bacterial respiration rate will increase following a transition from carbon-limited bacterial growth towards mineral-nutrient-limited growth. Thus the high community respiration and frequent CO₂-supersaturation in humic lakes may be caused not only by the absolute supply of organic C, but also by the stoichiometry of the dissolved nutrient pool.     

Lake Biwa and the ocean: geochemical similarity and difference

The average composition of water, bottom sediments, manganese (Mn) crusts, and Mn concretions from Lake Biwa (the largest freshwater lake in Japan) are re-examined, in conjunction with those of seawater, oceanic pelagic clay, and deep-sea Mn nodules. The purpose is to gain additional insights into the geochemical behaviors of elements in Lake Biwa and the ocean, which are quite different in ionic strength (or salinity), pH, water residence times, sediment accumulation rates, carbon fluxes to sediments, and the redox potential in sediments. Excluding a few millimeters of oxic surface sediment, there is no appreciable accumulation of Mn in the Lake Biwa bottom sediments due to reducing condition there. Consequently, other B-type cations [such as iron (Fe), gallium (Ga), copper (Cu), lead (Pb), cobalt (Co), tin (Sn), and bismuth (Bi), with subshell valence electron configuration of d ¹⁻¹⁰] are also less concentrated in the lake sediments than in the oceanic pelagic clay. In turn, B-type cations have much higher dissolved concentrations in the lake water than in the ocean. The rare earth elements (REE) mainly form organic complexes in the lake water and carbonate complexes in the ocean. REE are mostly associated with detritus aluminosilicate phases in Lake Biwa sediments but with phosphate phases in deep-sea sediments. Fe and Mn oxide phases are clearly separated in marine Mn nodules and crusts but not in Mn crusts and concretions from Lake Biwa. Useful parameters such as the enrichment factor (E _Al) and logarithms of the distribution coefficient (log K _d) of elements between solid and liquid phases were estimated in both systems for further discussions.     

Sedimentation in Boreal Lakes—The Role of Flocculation of Allochthonous Dissolved Organic Matter in the Water Column

We quantified sedimentation of organic carbon in 12 Swedish small boreal lakes (<0.48 km²), which ranged in dissolved organic carbon (DOC) from 4.4 to 21.4 mg C l⁻¹. Stable isotope analysis suggests that most of the settling organic matter is of allochthonous origin. Annual sedimentation of allochthonous matter per m² lake area was correlated to DOC concentration in the water (R ² = 0.41), and the relationship was improved when sedimentation data were normalized to water depth (R ² = 0.58). The net efflux of C as CO₂ from the water to the atmosphere was likewise correlated to DOC concentration (R ² = 0.52). The losses of organic carbon from the water column via mineralization to CO₂ and via sedimentation were approximately of equal importance throughout the year. Our results imply that DOC is a precursor of the settling matter, resulting in an important pathway in the carbon cycle of boreal lakes. Thus, flocculation of DOC of terrestrial origin and subsequent sedimentation could lead to carbon sequestration by burial in lake sediments.     

A preliminary organic carbon budget for a small dystrophic lake in Maritime Canada

The results of a preliminary organic budget for a small (1.13 h) dystrophic lake in Maritime Canada are presented. Wood's Pond is moderately autotrophically productive (395 mg C m^-2 day^-1). Allochthonous inputs overwhelmed autochthonous production by an approximate ratio of 9.7:1. Seepage through the surrounding Sphagnum mosses accounted for 89.9% of all organic carbon entering the lake while fluvial transport was responsible for over 90% of losses. The yearly balance was a net loss of approximately 1820 kg C. The marked dominance of allochthonous inputs over autochthonous production obviously influences the physico-chemical limnology of Wood's Pond but it does not necessarily follow that this system is heterotrophic. The yearly autotrophic production, approximately 1466 kg C, essentially balances an annual community respiration and insect emergence of 1481 kg C. This suggests that, at least in theory, the biological functioning of this dystrophic lake system could be driven almost entirely by autotrophic production.     

Spatial changes in carbon and nitrogen stable isotopes of the plankton food web in a saline lake ecosystem

We investigated spatial changes in the isotope ratios of the plankton food web in Lake Chany, Siberia, Russia, especially at an estuarine transition zone of the lake. The δ¹³C values of particulate organic matter (POM) varied among the sampling sites, and increased with increasing pH of the lake water. This may reflect a shift by phytoplankton from using CO₂ to using bicarbonate for photosynthesis with increasing pH. The δ¹³C values of zooplankton community also changed at each site along with those of the POM. This was indicative of carbon isotope changes of plankton food webs between the stations along an environmental gradient.     

The organic carbon budget of a shallow arctic tundra lake on the Tuktoyaktuk Peninsula,N.W.T., Canada

The organic carbon cycle of a shallow, tundra lake (mean depth 1.45 m) was followed for 5 weeks of the open water period by examining CO₂ fluxes through benthic respiration and anaerobic decomposition, photosynthesis of benthic and phytoplankton communities and gas exchange at the air-water interface. Total photosynthesis (as consumption of carbon dioxide) was 37.5 mmole C m^–2 d^–1, 83% of which was benthic and macrophytic. By direct measurement benthic respiration exceeded benthic photosynthesis by 6.6 mmole C m^–2 d^–1. The lake lost 1.4 × 10⁶ moles C in two weeks after ice melted by degassing C0₂, and 6.8 mmole C m^–2 d^–1 (1.5 × 10⁶ moles) during the remainder of the open water period; 2.2 mmole C m² d^–1 of this was release Of CO₂ stored in the sediments by cryoconcentration the previous winter. Anaerobic microbial decomposition was only 4% of the benthic aerobic respiration rate of 38 mmole C m^–2 d^–1. An annual budget estimate for the lake indicated that 50% of the carbon was produced by the benthic community, 20% by phytoplankton, and 30% was allochthonous material. The relative contribution of allochthonous input was in accordance with measurement of the ¹⁵N of sedimented organic matter.     

Links between Terrestrial Primary Production and Bacterial Production and Respiration in Lakes in a Climate Gradient in Subarctic Sweden

We compared terrestrial net primary production (NPP) and terrestrial export of dissolved organic carbon (DOC) with lake water heterotrophic bacterial activity in 12 headwater lake catchments along an altitude gradient in subarctic Sweden. Modelled NPP declined strongly with altitude and annual air temperature decreases along the altitude gradient (6°C between the warmest and the coldest catchment). Estimated terrestrial DOC export to the lakes was closely correlated to NPP. Heterotrophic bacterial production (BP) and respiration (BR) were mainly based on terrestrial organic carbon and strongly correlated with the terrestrial DOC export. Excess respiration over PP of the pelagic system was similar to net emission of CO₂ in the lakes. BR and CO₂ emission made up considerably higher shares of the terrestrial DOC input in warm lakes than in cold lakes, implying that respiration and the degree of net heterotrophy in the lakes were dependant not only on terrestrial export of DOC, but also on characteristics in the lakes which changed along the gradient and affected the bacterial metabolization of allochthonous DOC. The study showed close links between terrestrial primary production, terrestrial DOC export and bacterial activity in lakes and how these relationships were dependant on air temperature. Increases in air temperature in high latitude unproductive systems might have considerable consequences for lake water productivity and release of CO₂ to the atmosphere, which are ultimately determined by terrestrial primary production.     

Plankton metabolic balance at the margins of very large lakes: temporal variability and evidence for dominance of autochthonous processes

1. Planktonic metabolic balance (PMB_m) of the surface mixed layer (SML) was measured as the ratio of areal rates of gross photosynthesis (AGP) to community respiration (AR) to test the idea that previously neglected allochthonous inputs of organic matter may support chronic excess respiration relative to photosynthesis even in very large lakes during the summer (May–October) season. Four Laurentian Great Lakes coastal sites of varying trophic status, physical structure and dissolved organic carbon (DOC) concentration were studied with oxygen light‐and dark bottle and ¹⁴C methods, with excess respiration anticipated in the higher DOC sites. 2. Planktonic metabolic balance was net autotrophic in 73% of the observations. The calculated mixing depth at which respiration would predominate over photosynthesis was greater than typically observed mixing depths, varying from 11 to 25 m in the more transparent, low DOC (<3 g m⁻³) sites to 8–15 m in the higher DOC (4–6 g m⁻³) sites. Biweekly measurements at one higher and one lower DOC site over two successive summer seasons showed that seasonal gross photosynthesis (ΣAGP) exceeded seasonal community respiration (ΣAR). Despite the location of the sites at the periphery of the lakes, where allochthonous influences should be strongest, the measurements indicated prevailing conditions of net autotrophy in the SML. 3. Individual measurements of AR from this study and the literature were correlated with AGP but season average values were more tightly correlated, suggesting a tighter coupling of metabolic rates on a larger scale and a looser coupling on a shorter scale. The observed temporal variability was variable in pattern among years, and likely to confound inferences based on limited sampling. 4. It is shown that accepted formulations for AGP and AR lead to the conclusion that PMB_m should be largely predictable from knowledge of a biological properties ratio (light‐saturated gross photosynthesis to plankton community respiration, P_max/R) and a physical properties ratio (euphotic to mixing depths, Z_eu/Z_m) and this prediction was confirmed using data from this study and from the literature. The evident success of this model points to the pre‐eminent importance of plankton biomass and physical conditions in determining metabolic balance. Variation in these fundamental factors appears capable of explaining the diversity of PMB_m reported for different Great Lakes.     

Bacterial Growth on Allochthonous Carbon in Humic and Nutrient-enriched Lakes: Results from Whole-Lake 13C Addition Experiments

Organic carbon (C) in lakes originates from two distinct sources—primary production from within the lake itself (autochthonous supply) and importation of organic matter from the terrestrial watershed (allochthonous supply). By manipulating the ¹³C of dissolved inorganic C, thereby labeling within-lake primary production, we examined the relative importance of autochthonous and allochthonous C in supporting bacterial production. For 35 days, NaH¹³CO₃ was added daily to two small, forested lakes. One of the lakes (Peter) was fertilized so that primary production exceeded total respiration in the epilimnion. The other lake (Tuesday), in contrast, was low in productivity and had high levels of colored dissolved organic C (DOC). To obtain bacterial C isotopes, bacteria were regrown in situ in particle-free lake water in dialysis tubes. The contribution of allochthonous C to bacterial biomass was calculated by applying a two-member mixing model. In the absence of a direct measurement, the isotopic signature of the autochthonous end-member was estimated indirectly by three different approaches. Although there was excess primary production in Peter Lake, bacterial biomass consisted of 43–46% allochthonous C. In Tuesday Lake more than 75% of bacterial growth was supported by allochthonous C. Although bacteria used autochthonous C preferentially over allochthonous C, DOC from the watershed contributed significantly to bacterial production. In combination with results from similar experiments in different lakes, our findings suggest that the contribution of allochthonous C to bacterial production can be predicted from ratios of chromophoric dissolved organic matter (a surrogate for allochthonous supply) and chlorophyll a (a surrogate for autochthonous supply).     

Non-phototrophic CO 2 fixation by soil microorganisms

Although soils are generally known to be a net source of CO₂ due to microbial respiration, CO₂ fixation may also be an important process. The non-phototrophic fixation of CO₂ was investigated in a tracer experiment with ¹⁴CO₂ in order to obtain information about the extent and the mechanisms of this process. Soils were incubated for up to 91 days in the dark. In three independent incubation experiments, a significant transfer of radioactivity from ¹⁴CO₂ to soil organic matter was observed. The process was related to microbial activity and could be enhanced by the addition of readily available substrates such as acetate. CO₂ fixation exhibited biphasic kinetics and was linearly related to respiration during the first phase of incubation (about 20–40 days). The fixation amounted to 3–5% of the net respiration. After this phase, the CO₂ fixation decreased to 1–2% of the respiration. The amount of carbon fixed by an agricultural soil corresponded to 0.05% of the organic carbon present in the soil at the beginning of the experiment, and virtually all of the fixed CO₂ was converted to organic compounds. Many autotrophic and heterotrophic biochemical processes result in the fixation of CO₂. However, the enhancement of the fixation by addition of readily available substrates and the linear correlation with respiration suggested that the process is mainly driven by aerobic heterotrophic microorganisms. We conclude that heterotrophic CO₂ fixation represents a significant factor of microbial activity in soils.     

Influence of net ecosystem metabolism in transferring riverine organic carbon to atmospheric CO<Subscript>2</Subscript> in a tropical coastal lagoon (Chilka Lake,India)

Studies on biogeochemical cycling of carbon in the Chilka Lake, Asia’s largest brackish lagoon on the east coast of India, revealed, for the first time, strong seasonal and spatial variability associated with salinity distribution. The lake was studied twice during May 2005 (premonsoon) and August 2005 (monsoon). It exchanges waters with the sea (Bay of Bengal) and several rivers open into the lake. The lake showed contrasting levels of dissolved inorganic carbon (DIC) and organic carbon (DOC) in different seasons; DIC was higher by ∼22% and DOC was lower by ∼36% in premonsoon than in monsoon due to seasonal variations in their supply from rivers and in situ production/mineralisation. The DIC/DOC ratios in the lake during monsoon were influenced by physical mixing of end member water masses and by intense respiration of organic carbon. A strong relationship between excess DIC and apparent oxygen utilisation showed significant control of biological processes over CO₂ production in the lake. Surface partial pressure of CO₂ (pCO₂), calculated using pH–DIC couple according to Cai and Wang (Limnol and Oceanogr 43:657–668, 1998), exhibited discernable gradients during monsoon through northern (1,033–6,522 μatm), central (391–2,573 μatm) and southern (102–718 μatm) lake. The distribution pattern of pCO₂ in the lake seems to be governed by pCO₂ levels in rivers and their discharge rates, which were several folds higher during monsoon than premonsoon. The net CO₂ efflux, based on gas transfer velocity parameterisation of Borges et al. (Limnol and Oceanogr 49(5):1630–1641, 2004), from entire lake during monsoon (141 mmolC m⁻² d⁻¹ equivalent to 2.64 GgC d⁻¹ at basin scale) was higher by 44 times than during premonsoon (9.8 mmolC m⁻² d⁻¹ ≈ 0.06 GgC d⁻¹). 15% of CO₂ efflux from lake in monsoon was contributed by its supply from rivers and the rest was contributed by in situ heterotrophic activity. Based on oxygen and total carbon mass balance, net ecosystem production (NEP) of lake (−308 mmolC m⁻² d⁻¹ ≈ −3.77 GgC d⁻¹) was found to be almost in consistent with the total riverine organic carbon trapped in the lake (229 mmolC m⁻² d⁻¹ ≈ 2.80 GgC d⁻¹) suggesting that the strong heterotrophy in the lake is mainly responsible for elevated fluxes of CO₂ during monsoon. Further, the pelagic net community production represented 92% of NEP and benthic compartment plays only a minor role. This suggests that Chilka lake is an important region in biological transformation of organic carbon to inorganic carbon and its export to the atmosphere.     

Nitrogen transformations at the sediment–water interface across redox gradients in the Laurentian Great Lakes

The capacity of a lake to remove reactive nitrogen (N) through denitrification has important implications both for the lake and for downstream ecosystems. In large oligotropic lakes such as Lake Superior, where nitrate (NO₃ ^?) concentrations have increased steadily over the past century, deep oxygen penetration into sediments may limit the denitrification rates. We tested the hypothesis that the position of the redox gradient in lake sediments affects denitrification by measuring net N-fluxes across the sediment–water interface for intact sediment cores collected across a range of sediment oxycline values from nearshore and offshore sites in Lake Superior, as well as sites in Lake Huron and Lake Erie. Across this redox gradient, as the thickness of the oxygenated sediment layer increased from Lake Erie to Lake Superior, fluxes of NH₄ ⁺ and N₂ out of the sediment decreased, and sediments shifted from a net sink to a net source of NO₃ ^?. Denitrification of NO₃ ^? from overlying water decreased with thickness of the oxygenated sediment layer. Our results indicate that, unlike sediments from Lake Erie and Lake Huron, Lake Superior sediments do not remove significant amounts of water column NO₃ ^? through denitrification, likely as a result of the thick oxygenated sediment layer.     

CO2 Saturation and Trophic Shift Induced by Microbial Metabolic Processes in a River-Dominated Ocean Margin (Tropical Shallow Lagoon,Chilika, India)

An effort has been made for the first time in Asia's largest brackish water lagoon, Chilika, to investigate the spatio-temporal variability in primary productivity (PP), bacterial productivity (BP), bacterial abundance (BA), bacterial respiration (BR) and bacterial growth efficiency (BGE) in relation to partial pressure of CO₂ (pCO₂) and CO₂ air–water flux and the resultant trophic switchover. Annually, PP ranged between 24 and 376 µg C L^?1 d^?1 with significantly low values throughout the monsoon (MN), caused by light limitation due to inputs of riverine suspended matter. On the contrary, BP and BR ranged from 11.5 to 186.3 µg C L^?1 d^?1 and from 14.1 to 389.4 µg C L^?1 d^?1, respectively, with exceptionally higher values during MN. A wide spatial and temporal variation in the lagoon trophic status was apparent from BP/PP (0.05–6.4) and PP/BR (0.10–18.2) ratios. The seasonal shift in net pelagic production from autotrophy to heterotrophy due to terrestrial organic matter inputs via rivers, enhanced the bacterial metabolism during the MN, as evident from the high pCO₂ (10,134 µatm) and CO₂ air–water flux (714 mm m^?2 d^?1). Large variability in BGE and BP/PP ratios especially during MN led to high bacteria-mediated carbon fluxes which was evident from significantly high bacterial carbon demand (BCD >100% of PP) during this season. This suggested that the net amount of organic carbon (either dissolved or particulate form) synthesized by primary producers in the lagoon was not sufficient to satisfy the bacterial carbon requirements. Lagoon sustained low to moderate autotrophic–heterotrophic coupling with annual mean BCD of 231% relative to the primary production, which depicted that bacterioplankton are the mainstay of the lagoon biogeochemical cycles and principal players that bring changes in trophic status. Study disclosed that the high CO₂ supersaturation and oxygen undersaturation during MN was attributed to the increased heterotrophic respiration (in excess of PP) fuelled by allochthonous organic matter. On a spatial scale, lagoon sectors such as south sector, central sector and outer channel recorded “net autotrophic,” while the northern sector showed “net heterotrophic” throughout the study period.     

Sequential bioavailability of sedimentary organic matter to heterotrophic bacteria

Aquatic sediments harbour diverse microbial communities that mediate organic matter degradation and influence biogeochemical cycles. The pool of bioavailable carbon continuously changes as a result of abiotic processes and microbial activity. It remains unclear how microbial communities respond to heterogeneous organic matrices and how this ultimately affects heterotrophic respiration. To explore the relationships between the degradation of mixed carbon substrates and microbial activity, we incubated batches of organic‐rich sediments in a novel bioreactor (IsoCaRB) that permitted continuous observations of CO₂ production rates, as well as sequential sampling of isotopic signatures (δ¹³C, Δ¹⁴C), microbial community structure and diversity, and extracellular enzyme activity. Our results indicated that lower molecular weight (MW), labile, phytoplankton‐derived compounds were degraded first, followed by petroleum‐derived exogenous pollutants, and finally by higher MW polymeric plant material. This shift in utilization coincided with a community succession and increased extracellular enzyme activities. Thus, sequential utilization of different carbon pools induced changes at both the community and cellular level, shifting community composition, enzyme activity, respiration rates, and residual organic matter reactivity. Our results provide novel insight into the accessibility of sedimentary organic matter and demonstrate how bioavailability of natural organic substrates may affect the function and composition of heterotrophic bacterial populations.