Kinetics of CH4 production from H2 and CO2 in a hollow fiber reactor by plug flow reaction model

For microbial production of CH₄ from H₂ and CO₂, a hollow fiber reactor had been developed to increase an interfacial area between liquid and gas phases. The CH₄ production with the hollow fiber reactor was analyzed by applying a plug flow reaction model of a tubular reactor. It was possible to apply the model to the reaction of CH₄ production. The relationships between influent gas velocity, length of reactor and reaction yield were simulated by the reaction model. The plug flow reaction model was useful to design a hollow fiber bioreactor for the biomethanation of H₂ and CO₂.     

Theoretical study on the initial reaction mechanisms of <Emphasis Type="Italic">ansa</Emphasis>-metallocene zirconium precursor on hydroxylated Si(1 0 0) surface

The initial reaction mechanisms for depositing ZrO₂ thin films using ansa-metallocene zirconium (Cp₂CMe₂)ZrMe₂ precursor were studied by density functional theory (DFT) calculations. The (Cp₂CMe₂)ZrMe₂ precursor could be absorbed on the hydroxylated Si(1 0 0) surface via physisorption. Possible reaction pathways of (Cp₂CMe₂)ZrMe₂ were proposed. For each reaction, the activation energies and reaction energies were compared, and stationary points along the reaction pathways were shown. In addition, the influence of dispersion effects on the reactions was evaluated by non-local dispersion corrected DFT calculations.     

Kinetic analysis of the fluorescence reaction of histamine with orthophthalaldehyde

Histamine reacts with orthophthalaldehyde (OPA) in an alkaline medium to form an unstable fluorescent adduct (F_base). Acidification of the solution gives a stable adduct (F_acid). In order to elucidate the mechanism of this fluorescence reaction, a kinetic study of this reaction was carried out. Although F_base was believed to be the precursor of F_acid, it was shown not to be the precursor of F_acid owing to the effects of the reaction time in an alkaline medium and OPA concentration on the yields of F_base and F_acid. The kinetic analysis of the formation and degradation of F_base revealed the pathway of the fluorescence reaction. On the basis of the results obtained in this study, the mechanism of the fluorescence reaction is proposed.     

Avicel hydrolysis by cellulase enzyme in supercritical CO2

Summary The enzymatic hydrolysis reaction in supercritical CO₂ to produce glucose from cellulosic material Avicel was investigated. In comparison with the result from the enzymatic hydrolysis reaction of Avicel without CO₂ introduced as a reaction medium, the reaction rate and glucose concentration are increased.     

Effects of solvent viscosity and different guanidine salts on the kinetics of ribonuclease A chain folding

The kinetics of folding of the two forms of unfolded ribonuclease A have been measured as a function of solvent viscosity by adding either glycerol or sucrose. The aim is to find out if either reaction is rate limited by segmental motion whose rate depends on external friction. The fast folding reaction (U₂ ? N) is known to be the direct folding process, and the slow folding reaction (U₁ ? N) is known to be rate limited by an interconversion between two forms (U₁ ? U₂) which are present after unfolding in strongly denaturing conditions. No dependence on solvent viscosity is found, either for the direct folding reaction or for the interconversion reaction. Each folding reaction has also been tested to see if its rate depends on the concentration of one or more partly folded intermediates, by adding denaturants destabilize any partly folded structures. Different guanidine salts are used as denaturants to vary the denaturing effectiveness of the salt while holding the guanidinium ion concentration constant. The rates both of the direct folding reaction and of the interconversion reaction decrease in relation to the denaturing effectiveness of the salt. However, there is a basic difference between the responses of the fast and slow folding reactions to low concentrations of denaturants. Although each folding reaction produces native protein, there is an 800-fold decrease in the rate of the fast folding reaction in 1M guanidine thiocyanate and only a 13-fold decrease in the rate of the slow folding reaction. This is consistent with the fast reaction being the direct folding process and the slow reaction being rate limited by the initial conversion of the slowrefolding to the fast-refolding form. Both the lack of viscosity dependence and the effects of denaturants indicate that the formation of structure is rate limiting in the direct folding reaction, U₂ ? N. The failure to find a viscosity dependence for the interconversion reaction, U₁ ? U₂, indicates that in this reaction also friction-limited segmental motion is not the rate-limiting process. Since the U₁ ? U₂ interconversion still occurs when the polypeptide chain is completely unfolded, the surprising result is that its rate in refolding conditions depends significantly on a reaction intermediate which is “denatured” by guanidine salts.     

Photoreactions of bacteriopheophytins and bacteriochlorophylls in reaction centers of Rhodopseudomonas sphaeroides and Chloroflexus aurantiacus

A comparison of spectral properties of reaction centers from Chloroflexus aurantiacus and Rhodopseudomonas sphaeroides (R-26) is reported. Treatment of reaction centers from Rps. sphaeroides with NaBH₄ leads to a decrease of the dipole strength of the 800-nm band by factor of approx. 1.75-1.95 and to the formation of new bacteriopheophytin, BPh-715, which is almost completely removed during the purification of reaction centers. The modification of the reaction centers does not change the quantum yield of P photooxidation and the spectrum of BPh-545 (H₁) photoreduction which includes the changing of the 800-nm band. This implies the preservation of the photoactive chain P-B₁-H₁-Q_A (where B₁ is the bacteriochlorophyll (BChl)-800 molecule situated between P and H₁) and the modification of the second BChl-800 (B₂). The preparation of modified reaction centers is a mixture of at least three types of reaction centers with different contents of B₂ and of the second BPh (H₂). Some of the reaction centers (5-25%) contain the original B₂ and H₂ molecules (type I). In the CD spectrum of modified reaction centers a decrease of the 800-nm band and the appearance of a positive band at 765 nm is observed. This spectrum is similar to the CD spectrum of Chloroflexus reaction centers containing 3 BPh's and 3 BChl's. This implies that in some (approx. 40%) of the modified Rps. sphaeroides reaction centers (type II) B₂ has been replaced by BPh a which interacts with H₂. Probably some of the modified reaction centers (approx. 40%) have lost both B₂ and H₂ (type III). The modification of reaction centers leads to a considerable decrease of the CD bands at 800 (+) nm and 810 (−) nm and to a decrease of the absorbance changes near 800 nm in the difference absorption spectrum of the oxidation of P. The data are interpreted in terms of the interaction between P and B₁ molecules which gives two transitions at 790-800 and 810 nm with different orientations in modified Rps. sphaeroides as well as in Chloroflexus reaction centers. Similar transitions are observed for the interaction between P and B₂. The spectral analysis shows the existence of two chains P-B₁-H₁, and P-B₂-H₂ in which the distances between the centers of molecules are 1.3 nm or less.     

A widely applicable rate equation for the determination of enzyme activity at advanced stages of reaction

Summary An empirical equation for representing the course of the reaction has been developed for amylase ofAspergillus oryzae by using the method of time value estimation as a measure of enzyme activity. A convenient form of the equation for calculating and plotting results is t/x=bt+a/(E), where t=reaction time, x=amount of reaction products formed, (E)=enzyme concentration, a/(E)=reciprocal of initial velocity. The parameter b makes the equation of a rather universal applicability over large portions of the reaction curves. If b=0, the reaction is of zero order; if b=1/(S)_o, the reaction is of second order; a first order reaction can be represented over a range from 0 to 55% if b≏1/2(S)_o. In the case of aMichaelis-Menten mechanism, b=K_s/2(S)_o[(S)_o+K_s] afterBrant andAlberty (1961, personal communication), and then the ratio of (S)_o/K_s limits the range of validity of the empirical equation. As a tool for determining enzyme activity over a wide range of reaction, the equation is most useful in cases where the rate of reaction decreases rapidly,e.g. if (S)_o/K_s is small, or if inactivation and/or inhibition of the enzyme during the reaction is involved. For the assay of enzymes the main advantages of the empirical equation over the integratedMichaelis-Menten equation, and other more complicated variations thereof, are ease of handling and applicability to a large number of enzymes.     

Hydroxyl Radical Generation Depending on O2 or H2O by a Photocatalyzed Reaction in an Aqueous Suspension of Titanium Dioxide

Photocatalytic production of the electron (e^-) and positive hole (h⁺) in an aqueous suspension of TiO₂ (anatase form) under illumination by near-UV light (295-390 nm) generated the superoxide (O₂ ^-) and hydroxyl radical (?OH), which both proceeded linearly with reaction time, while H₂O₂ accumulated non-linearly. Under anaerobic conditions (introduced Ar gas), the yields of three active species of oxygen were decreased to 10-20% of those detected in the air-saturated reaction. The electron spin resonance (ESR) signal characteristics of ?OH were obtained when a spin trap of 5,5-dimthyl-1-pyrroline-N-oxide (DMPO) was included in the illuminating mixture. The intensity of the ESR signal was increased by Cu/Zn superoxide dismutase, and decreased under anaerobic conditions, amounting to only 20% of the intensity detected in the aerobic reaction. The addition of H₂O₂ to the reaction mixture resulted in about an 8-fold increase of ?OH production in the anaerobic reaction, but only about 1.5-fold in the aerobic reaction, indicating that e^- generated by the photocatalytic reaction reduced H₂O₂ to produce ?OH plus OH^-. On the other hand, D₂O lowered the yield of ?OH generation to 18% under air and 40% under Ar conditions, indicating the oxidation of H₂O by h⁺. The addition of Fe(III)-EDTA as an electron acceptor effectively increased ?OH generation, 2.3-fold in the aerobic reaction and 8.4-fold in the anaerobic reaction, the yield in the latter exceeding that in the air-saturated reaction.     

Resistance of reaction centers from Rhodobacter sphaeroides against UV-B radiation. Effects on protein structure and electron transport

Inhibition of electron transport and damage to the protein subunits by ultraviolet-B (UV-B, 280–320 nm) radiation have been studied in isolated reaction centers of the non-sulfur purple bacterium Rhodobacter sphaeroides R26. UV-B irradiation results in the inhibition of charge separation as detected by the loss of the initial amplitude of absorbance change at 430 nm reflecting the formation of the P⁺(Q_AQ_B)^– state. In addition to this effect, the charge recombination accelerates and the damping of the semiquinone oscillation increases in the UV-B irradiated reaction centers. A further effect of UV-B is a 2 fold increase in the half- inhibitory concentration of o-phenanthroline. Some damage to the protein subunits of the RC is also observed as a consequence of UV-B irradiation. This effect is manifested as loss of the L, M and H subunits on Coomassie stained gels, but not accompanied with specific degradation products. The damaging effects of UV-B radiation enhanced in reaction centers where the quinone was semireduced (Q_B ^–) during UV-B irradiation, but decreased in reaction centers which lacked quinone at the Q_B binding site. In comparison with Photosystem II of green plant photosynthesis, the bacterial reaction center shows about 40 times lower sensitivity to UV-B radiation concerning the activity loss and 10 times lower sensitivity concerning the extent of reaction center protein damage. It is concluded that the main effect of UV-B radiation in the purple bacterial reaction center occurs at the Q_AQ_B quinone acceptor complex by decreasing the binding affinity of Q_B and shifting the electron equilibration from Q_AQ_B ^– to Q_A ^–Q_B. The inhibitory effect is likely to be caused by modification of the protein environment around the Q_B binding pocket and mediated by the semiquinone form of Q_B. The UV-resistance of the bacterial reaction center compared to Photosystem II indicates that either the Q_AQ_B acceptor complex, which is present in both types of reaction centers with similar structure and function, is much less susceptible to UV damage in purple bacteria, or, more likely, that Photosystem II contains UV-B targets which are more sensitive than its quinone complex.Abbreviations Bchl bacteriochlorophyll - P Bchl dimer - Q_A primary quinone electron acceptor - Q_B secondary quinone electron acceptor - RC reaction center - UV-B ultraviolet-B     

PEGylation kinetics of recombinant hirudin and its application for the production of PEGylated HV2 species

A critical challenge of PEGylation is the production of the desired PEGylated protein form at a high yield. In this study, a kinetic model was constructed successfully to describe the PEGylation reaction of recombinant hirudin variant-2 (HV2) with monomethoxy-PEG-succinimidyl carbonate (mPEG-SC) by fitting the experimental data. Moreover, PEGylation reaction conditions were investigated using the established model and the corresponding experiments to determine the optimal condition to achieve the mono-PEG-HV2 at the desired yield. The model predictions agreed well with the experimental data. Several important process parameters (maximum theoretical yield of mono-PEG-HV2 (y_max), critical PEG/HV2 molar ratio (m_crit) and reaction time to achieve y_max (t_max)) and their mathematical equations were obtained to determine the optimum reaction conditions. Among reaction conditions affecting the PEGylation rates, pH and temperature displayed little effect on y_max, but y_max increased as PEG size increased. Optimal reaction condition to produce mono-PEG-HV2 was as follows: pH and temperature could vary in a certain range; whereas PEG/HV2 molar ratio should be slightly greater than m_crit and the reaction should be stopped at t_max. The results of this study indicate that the proposed reaction kinetic model can provide a possible mechanism interpretation for real PEGylation reactions and optimize efficiently the PEGylation step.     

The effect of pH and ionic strength on the pre-steady-state reaction of cytochrome c and cytochrome aa3

(1) In the pH range between 5.0 and 8.0, the rate constants for the reaction of ferrocytochrome c with both the high- and low-affinity sites on cytochrome aa₃ increase by a factor of approx. 2 per pH unit. (2) The pre-steady-state reaction between ferrocytochrome c and cytochrome aa₃ did not cause a change in the pH of an unbuffered medium. Furthermore, it was found that this reaction and the steady-state reaction are equally fast in H₂O and ²H₂O. From these results it was concluded that no protons are directly involved in a rate-determining reaction step. (3) Arrhenius plots show that the reaction between ferrocytochrome c and cytochrome aa₃ requires a higher enthalpy of activation at temperatures below 20°C (15–16 kcal/mol) as compared to that at higher temperature (9 kcal/mol). We found no effect of ionic strength on the activation enthalpy of the pre-steady-state reaction, nor on that of the steady-state reaction. This suggests that ionic strength does not change the character of these reactions, but merely affects the electrostatic interaction between both cytochromes.     

Effects of CO2, O2 and temperature on a high-affinity form of ribulose diphosphate carboxylase-oxygenase from spinach

A high-affinity form of ribulose diphosphate carboxylase, observed transiently in spinach-leaf extracts soon after extraction, was inhibited by O₂ competitively with respect to CO₂. Analogously, the ribulose diphosphate oxygenase activity for this form was inhibited by CO₂, competitively with respect to O₂. For each gas, the K_m for the reaction in which it was a substrate was similar to its K_i for the reaction it inhibited. The Arrhenius activation energy for the oxygenase reaction was 1.5 times that of the carboxylase. These characteristics are consistent with ribulose diphosphate oxygenase being the enzymatic reaction responsible for synthesizing the substrate for photorespiration and with the concept that the balance between photosynthesis and photorespiration of leaves is a reflection of the ratio between the two activities of this bi-functional enzyme.     

Ethyl ester production by homogeneous alkaline transesterification: influence of the catalyst

In this work, the process for ethyl ester production is studied using refined sunflower oil, and NaOH, KOH, CH₃ONa, and CH₃OK, as catalysts. In all cases, the reaction is carried out in a single reaction step. The best conversion is obtained when the catalyst is either sodium methoxide or potassium methoxide. We found that during the transesterification with ethanol, soap formation is more important than in the case of methanol. The saponification reaction consumes an important fraction of the catalyst. The amount of catalyst consumed by this reaction is 100% in the case of using hydroxides as catalyst (KOH or NaOH), and 25%, and 28% when using CH₃ONa and CH₃OK as catalysts, respectively. Ethanol increases the catalyst solubility in the oil-ethyl ester phase, thus accelerating the saponification reaction.It is possible to obtain high conversions in a one-step reaction, with a total glycerine concentration close to 0.25%.     

Comparison of the reaction products of oleic acid ozonized in BCl3-, HCl- and BF3-MeOH media

In BF₃-MeOH medium, the principal ozonolysis reaction products of oleic acid were methyl nonanoate (MMC₉) and dimethyl azelate (DMC₉) in yields of 98% with formation of minor secondary reaction products (methyl octanoate, nonaldehyde with nonaldehyde dimethyl acetal and dimethyl suberate, plus the C₉ half-ester-aldehyde, with its corresponding acetal). The gas-liquid chromatographic analysis of the ozonolysis reaction products in BCl₃- and HCl-MeOH revealed the existence of 4 major components with low yields of methyl nonanoate and dimethyl azelate (45–50%). The two other major reaction products, isolated by a combination of thin-layer chromatography (TLC) and high-pressure liquid chromatography (HPLC), were identified as the chlorinated acetals, 1,1-dimethoxy-2-chloro-nonane and the 8-chloro-9,9-dimethoxy methyl nonanoate.     

Reaction mechanism of CH3M≡MCH3 (M=C, Si, Ge) with C2H4: [2+1] or [2+2] cycloaddition?

The mechanism of the cycloaddition reaction CH₃M≡MCH₃ (M=C, Si, Ge) with C₂H₄ has been studied at the CCSD(T)/6-311++G(d,p)//MP2/6-311++G(d,p) level. Vibrational analysis and intrinsic reaction coordinate (IRC), calculated at the same level, have been applied to validate the connection of the stationary points. The breakage and formation of the chemical bonds of the titled reactions are discussed by the topological analysis of electron density. The calculated results show that, of the three titled reactions, the CH₃Si≡SiCH₃+C₂H₄ reaction has the highest reaction activity because it has the lowest energy barriers and the products with the lowest energy. The CH₃C≡CCH₃+C₂H₄ reaction occurs only with difficulty since it has the highest energy barriers. The reaction mechanisms of the title reactions are similar. A three-membered-ring is initially formed, and then it changed to a four-membered-ring structure. This means that these reactions involve a [2+1] cycloaddition as the initial step, instead of a direct [2+2] cycloaddition.     

Homotropic effect of CO 2 in ribulose-1,5-diphosphate carboxylase reaction

The concentration effect of aqueous CO₂ on the reaction velocity of spinach leaf ribulose-1,5-diphosphate carboxylase has been reevaluated. The homotropic effect of CO₂ in the enzyme reaction supports the previously reported allosteric nature of the enzyme in the CO₂-fixation process in chloroplasts. The concentration of CO₂ giving the half maximal reaction velocity, S_0.5, has been calculated to be 1.47 × 10⁻⁵M.     

Theoretical discussion on the mechanism of binding CO2 by DBU and alcohol

Quantum chemical studies on the reaction of binding CO₂ by amidine base diazabicyclo [5.4.0]-undec-7-ene (DBU) and alcohol were carried out at the B3LYP/6-31g(d) level in order to find the reaction mechanism. The structures of reactants and product were optimised, and thermodynamic analyses were also carried out using the single point energy calculation and frequency analyses. It is noted that the reaction of binding CO₂ by DBU and propanol is thermodynamically feasible and qualitatively in accordance with the experimental observations. The results of thermodynamic and kinetic analyses demonstrate that the possible reaction mechanisms can be a two-step bimolecular reaction and a one-step trimolecular reaction. In the two-step bimolecular mechanism, the first step is the formation of intermediate by DBU and CO₂, and the second step is the nucleophilic attack of propanol on the intermediate. In the one-step trimolecular mechanism, O and H atoms of hydroxyl in propanol form an O–C bond with CO₂ and an H–N bond with DBU, respectively. The one-step trimolecular reaction seems a more reasonable mechanism because of the consideration of kinetic parameters.     

Replacement of bacteriopheophytin in reaction centers fromRhodobacter sphaeroides RS601 with plant pheophytin

In the presence of acetone and an excess of exogenous plant pheophytins, bacterio-pheophytins in the reaction centers from Rhodobacter sphaeroides RS601 were replaced by pheophytins at sites HA and HB, when incubated at 43.5℃ for more than 15 min. The substitution of bacteriopheophytins in the reaction centers was 50% and 71% with incubation of 15 and 60 min, respectively. In the absorption spectra of pheophytin-replaced reaction centers (Phe RCs), bands assigned to the transition moments Qx (537 nm) and QY (758 nm) of bacteriopheophytin disappeared, and three distinct bands assigned to the transition moments Qx (509/542 nm) and QY (674 nm) of pheophytin appeared instead. Compared to that of the control reaction centers, the photochemical activities of Phe RCs are 78% and 71% of control, with the incubation time of 15 and 60 min. Differences might exist between the redox properties of Phe RC and of native reaction centers, but the substitution is significant, and the new system is available for further     

Theoretical studies on reaction mechanism of H2 with COS

The reaction mechanisms of H₂ with OCS have been investigated theoretically by using density function theory method. Three possible pathways leading to major products CO and H₂S, as well as two possible pathways leading to by-product CH₄ have been proposed and discussed. For these reaction pathways, the structure parameters, vibrational frequencies and energies for each stationary point have been calculated, and the corresponding reaction mechanism has been given by the potential energy surface, which is drawn according to the relative energies. The calculated results show that the corresponding major products CO and H₂S as well as by-product CH₄ are in agreement with experimental findings, which provided a new illustration and guidance for the reaction of H₂ with OCS.