Post-fire regeneration in a Mediterranean pine forest with historically low fire frequency

Species of Mediterranean vegetation are known to regenerate directly after fire. The phenomenon of autosuccession (direct regeneration) has been found to be often combined with an increase of species richness during the first years after fire due to the high abundance of short-lived herbaceous plants facilitated by plentiful nutrients and light. The high degree of vegetation resilience, which is expressed in terms of autosuccession, has been explained by the selective pressure of fire in historic times. According to existing palaeoecological data, however, the Pinus halepensis forests in the Ricote Mountains (Province of Murcia, SE Spain) did not experience substantial fire impact before the presence of man nor are they especially fire-prone today. Therefore, we studied post-fire regeneration to find out if direct succession is present or if species from pre-fire vegetation are absent during the post-fire regeneration stages. Patterns of succession were deduced from observations made in sample plots on sites of a known regeneration age as well as in adjacent unburnt areas. The results of the vegetation analyses, including a Detrended Correspondence Analysis, indicate that Pinus halepensis forest regeneration after fire resembles autosuccession. As regards the presence of woody species, there is a high percentage similarity on north (83%) and south (70%) facing slopes during the first year after fire vs. reference areas which is due, for example, to direct regeneration of the resprouting Quercus coccifera or seeders like Pinus halepensis or Fumana laevipes. However, if herbaceous species are included in the comparison, the similarity on north-facing sites decreases (to 53%) with the presence of additional species, mainly ruderals like Anagallis arvensis or Reseda phyteuma, and even woody species on the burnt plots. This effect indicates “enhanced autosuccession”, which was not found on south-facing sites where overall species richness was very high irrespective of the impact of fire. Locally we found limited regeneration of some species, for example Pinus halepensis at high altitudes (1000 m), even 22 years after fire. As we assume that historical fires did not play an important role in the area and direct succession is present nevertheless, our results support the theory that autosuccession is not a process restricted to fire-prone areas. Fire has been only one of several selective forces since human settlement that probably led to a set of species pre-adapted against recurrent disturbance.     

Feeding patterns revealed host partitioning in a community of frog-biting mosquitoes

1. Resource partitioning is a critical component in competing species that coexist in a community. The biting behaviour of coexisting frog-biting mosquito species associated with a tropical anuran community is investigated. 2. Monthly samplings were taken for 2 years at two study sites in central Sri Lanka to collect frog-biting mosquitoes, anuran abundance, environmental data, and interactions between mosquitoes and anuran hosts. Mosquitoes were collected using mouth-operated aspirators and sound traps broadcasting anuran calls. Mosquitoes were identified using taxonomic keys and DNA barcodes. 3. A total of 1079 frog-biting mosquitoes from four species belonging to two genera were collected [Uranotaenia rutherfordi (5%), Ur. morphotype 1 (67%), Ur. morphotype 2 (21%), and Mansonia uniformis (7%)]. Species-specific interactions between Uranotaenia mosquitoes and their anuran host were found. Uranotaenia morphotype 1, the most common species, was mainly attracted (99%) to Duttaphrynus melanostictus. Uranotaenia rutherfordi was mainly attracted (95%) to Pseudophilautus rus, while Ur. morphotype 2 was attracted (97%) to Polypedates cruciger. These Uranotaenia species are active at different hours at night that correspond to the peak calling activity of their anuran host. Each Uranotaenia species was active at heights that coincide with the calling sites of their host. In contrast, Ma. uniformis was non-specific in host choice and was equally distributed in space and time with respect to host feeding. 4. Here, previously unknown feeding patterns of co-occurring frog-biting mosquito species and their interactions with anurans present in their community are reported, highlighting the existence of complex behavioural patterns of these mosquito communities.     

Paleoneurological evidence against a proboscis in the sauropod dinosaur Diplodocus

The dinosaur Diplodocus has a single, relatively large external bony narial orifice that is positioned far back between the orbits. In some mammals, such as elephants and tapirs, the caudal position of the narial opening is associated with a proboscis, so it has been suggested that Diplodocus possibly also had a trunk. In elephants, the facial nerve is large as it emerges from the brain. A branch of this nerve and a branch of the trigeminal nerve unite to form the proboscidial nerve that supplies the muscles of the powerful and complex motor system of the trunk. In contrast to the situation in modern elephants, the absolute as well as the relatively small size of the facial nerve in Diplodocus (deduced from an endocranial cast) indicates that there is no paleoneuroanatomical evidence for the presence of an elephant-like proboscis in this genus.     

Numerical simulation of flow fields in a tube with two branches

In the present study, a numerical calculation procedure based on the finite volume method was employed to simulate flow fields in double-branched tubes. The configuration was a tube with two vertical branches; the two branches were either on the same side or on the opposite side. The study focused on the baseline flow fields and the possible flow interaction between the two branches. The branching ratio and the branch /main tube diameter ratio were fixed in this study. The results showed that when the two branches were on the same side, the low/oscillating shear regions were found on the ventral walls of the branches and on the dorsal wall of the main tube distal to the branches. The flow field proximal to each branch was similar to that in a single-branched tube when the two branches were distant. When the branches were on the opposite side with the staggering distance S=0 (symmetric case), the low/oscillating shear regions were found on the lateral walls of the main tube. As S increased, the interaction between the two branches weakened, the low/oscillating shear regions were found on the lateral walls of the main tube to the side of the second branch. The flow field near the branch was significantly different from that of a single-branched tube. Care should be taken on localization of plaques in multi-branched vessels due to the flow pattern change. The numerical results were qualitatively consistent with what observed experimentally, by other investigators.     

Numerical flow simulation of pool-type fishways: new ways with well-known tools

Fish passage structures are built to restore the connectivity of rivers and allow the migration of aquatic fauna. In order to assess the functioning of a pool-type fishway, it is necessary, inter alia, to possess detailed knowledge of its flow structure, since observations of fishways, and in particular of the visible water surface, can only provide a rough idea of the actual conditions inside the pools. Numerical simulation has been used for many years to support engineering sciences. Especially, the modeling of flow processes in hydraulic machines can, on the one hand, help avoid major problems during the design stage of fish passage structures and, on the other, improve the structure’s hydraulic performance. To this end, two diploma theses within the framework of a research project of the local energy supplier Energie Baden-Württemberg AG (EnBW) employed modeling tools for 3D flow simulation, primarily for pool-slot fishways (PSF), and for traditional vertical slot fishways (VSF). Guest editors: R. L. Welcomme & G. Marmulla Hydropower, Flood Control and Water Abstraction: Implications for Fish and Fisheries     

Numerical simulation of air flow through a biofilter with heterogeneous porous media

Based on the ideal biofilter model, numerical simulation using lattice Boltzmann method is carried out to investigate the effect of Darcy number and porosity on removal efficiency of low headloss biofilter. The generalized Navier-Stokes model (Brinkman-Forchheimer-extended Darcy model) is applied making several assumptions. It is found that the Darcy number has determinant influence on the removal efficiency, and the effect of porosity on removal efficiency is very weak at lower Darcy numbers but very strong at higher Darcy numbers. It was found there was strong evidence of flow heterogeneity in the biofilter (Chitwood, D.E., Devinny, J.S., Reynolds Jr., F.E., 1999. Evaluation of a two-stage biofilter for treatment of POTW waste air. Environ. Prog. 18, 212-221). In this study we have found the biofilter performance can be improved by adjusting local Darcy number of the porous media in the biofilter.     

Ecophysiology of seed germination of wild Dahlia coccinea (Asteraceae) in a spatially heterogeneous fire-prone habitat

Dahlia coccinea grows on fire-prone xerophilous shrubland, on a lava field located in Mexico City. Two kinds of experiments were performed to test the role of fire and environmental heterogeneity on germination. The first experiment tested the effect of environmental conditions (constant and alternating temperatures, cold stratification and light). The second one tested the effects of fire and high temperatures (dry and moist heat) on germination. Seeds of Dahlia were indifferent to light. The seeds showed physiological dormancy, which was lost by after-ripening or by gibberellins. During simulated fires, dry seeds tolerated high temperatures of short duration and also withstood prolonged exposure to 60 °C. Dry heat treatment reduced the mechanical restriction for embryo growth in dormant seeds. Ash and prolonged exposure to moist heat inhibited germination. Exogenous gibberellins reversed the deleterious effects of prolonged exposure to moist heat. The effect of cold stratification was related to the seeds' physiological stage and to light conditions; stratification in the dark reduced germination. Seeds of D. coccinea could tolerate, evade, or be slightly favored by the effects of low intensity fires occurring in their habitat. Seed responses to treatments suggest that the spatially heterogeneous lava field could provide a wide variety of micro-sites where physiological dormancy could be broken and during fires seeds could maintain their viability and subsequently germinate and/or develop a seed bank.     

Seed size: a key trait determining species distribution and diversity of dry tropical forest in northern India

The study examined the relationships among seed size, plant distribution and abundance in a dry tropical forest of northern India. Results indicated that small-seeded species, which were generally wind-dispersed, were more widely distributed, at this local scale, compared to large-seeded species. However, the proportional abundance and basal cover of seed size categories indicated that the structure of the dry forest was largely determined by the medium- to large-seeded species. There was a considerable amount of redundancy within each seed size group, which added to the species diversity. Variability in seed size and the variable degree of shade-tolerance permit the species to occupy the full range of the gradient of light environments of the forest floor. This study revealed that in little to moderately disturbed locations seedlings of large-seeded species increased in abundance, whereas in extremely perturbed locations seedlings of species with medium-sized to small seeds were more abundant.     

A scanning electron microscopic study of the rat liver sinusoid

The surface ultrastructure of Kupffer cells in the rat liver has been studied by scanning electron microscopy (SEM). The results demonstrate that Kupffer cells are both significantly different and clearly distinct from endothelial cells. Kupffer cells have neither pores (and/or "sieve plates") nor fenestrations, all of which are present in endothelial cells. They possess a stellate shape, and only indirectly, with slender and irregular evaginations, contribute to the lining of the sinusoidal wall. Furthermore, the luminal surface in some areas contains a large population of short microvilli, microphicae and invaginations. These elements form a kind of microlabyrinth which may correpond to the "worm-like" structures described by transmission electron microscopy (TEM). In the present study, transition forms between endothelial and Kupffer cells were never found. On the contrary, considering the highly fenestrated nature of the endothelial cells, the Kupffer cells may, by ameboid movements, easily cross the overlapping barrier of the sinusoid and protrude into the lumen. Thus, acting as activated macrophages, the Kupffer cells might function to prevent the entrance of foreign material into the tissues of the liver through the fragile and highly fenestrated endothelium. Finally, the topographical reconstruction of the sinusoid by correlated SEM and TEM studies demonstrates the Kupffer cells, with their protruding cytoplasm and ability to extend into the lumen of the sinusoid, may actually change the caliber of the vessel, and thus function as a "sphincter" which causes a temporary arrest of the blood flow when the diameter of the sinusoidal lumen is reduced.     

An artificial liver sinusoid with a microfluidic endothelial-like barrier for primary hepatocyte culture

Primary hepatocytes represent a physiologically relevant model for drug toxicity screening. Here, we created a biologically inspired artificial liver sinusoid with a microfluidic endothelial-like barrier having mass transport properties similar to the liver acinus. This unit consisted of a cord of hepatocytes (50 x 30 x 500 microm) fed by diffusion of nutrients across the microfluidic endothelial-like barrier from a convective transport vessel (10 nL/min). This configuration sustained rat and human hepatocytes for 7 days without an extracellular matrix (ECM) coating. Experiments with the metabolism mediated liver toxicant diclofenac showed no hepatotoxicity after 4 h and an IC(50) of 334 +/- 41 microM after 24 h.     

Numerical simulation of two-phase non-Newtonian blood flow with fluid-structure interaction in aortic dissection

The behavior of blood cells and vessel compliance significantly influence hemodynamic parameters, which are closely related to the development of aortic dissection. Here the two-phase non-Newtonian model and the fluid-structure interaction (FSI) method are coupled to simulate blood flow in a patient-specific dissected aorta. Moreover, three-element Windkessel model is applied to reproduce physiological pressure waves. Important hemodynamic indicators, such as the spatial distribution of red blood cells (RBCs) and vessel wall displacement, which greatly influence the hemodynamic characteristics are analyzed. Results show that the proximal false lumen near the entry tear appears to be a vortex zone with a relatively lower volume fraction of RBCs, a low time-averaged wall shear stress (TAWSS) and a high oscillatory shear index (OSI), providing a suitable physical environment for the formation of atherosclerosis. The highest TAWSS is located in the narrow area of the distal true lumen which might cause further dilation. TAWSS distributions in the FSI model and the rigid wall model show similar trend, while there is a significant difference for the OSI distributions. We suggest that an integrated model is essential to simulate blood flow in a more realistic physiological environment with the ultimate aim of guiding clinical treatment.     

Numerical simulation of the urine flow in a stented ureter

When a stent is implanted in a blocked ureter, the urine passing from the kidney to the bladder must traverse a very complicated flow path. That path consists of two parallel passages, one of which is the bore of the stent and the other is the annular space between the external surface of the stent and the inner wall of the ureter. The flow path is further complicated by the presence of numerous pass-through holes that are deployed along the length of the stent. These holes allow urine to pass between the annulus and the bore. Further complexity in the pattern of the urine flow occurs because the coiled "pig tails," which hold the stent in place, contain multiple ports for fluid ingress and egress. The fluid flow in a stented ureter has been quantitatively analyzed here for the first time using numerical simulation. The numerical solutions obtained here fully reveal the details of the urine flow throughout the entire stented ureter. It was found that in the absence of blockages, most of the pass-through holes are inactive. Furthermore, only the port in each coiled pig tail that is nearest the stent proper is actively involved in the urine flow. Only in the presence of blockages, which may occur due to encrustation or biofouling, are the numerous pass-through holes activated. The numerical simulations are able to track the urine flow through the pass-through holes as well as adjacent to the blockages. The simulations are also able to provide highly accurate results for the kidney-to-bladder urine flow rate. The simulation method presented here constitutes a powerful new tool for rational design of ureteral stents in the future.     

Rotablation of a tricky calcified lesion in a tortuous right coronary artery

Netherlands Heart Journal -     

Numerical simulation of blood and interstitial flow through a solid tumor

A theoretical framework is presented for describing blood flow through the irregular vasculature of a solid tumor. The tumor capillary bed is modeled as a capillary tree of bifurcating segments whose geometrical construction involves deterministic and random parameters. Blood flow along the individual capillaries accounts for plasma leakage through the capillary walls due to the transmural pressure according to Sterling’s law. The extravasation flow into the interstitium is described by Darcy’s law for a biological porous medium. The pressure field developing in the interstitium is computed by solving Laplace’s equation subject to derived boundary conditions at the capillary vessel walls. Given the arterial, venous, and tumor surface pressures, the problem is formulated as a coupled system of integral and differential equations arising from the interstitium and capillary flow transport equations. Numerical discretization yields a system of linear algebraic equations for the interstitial and capillary segment pressures whose solution is found by iterative methods. Results of numerical computations document the effect of the interstitial hydraulic and vascular permeability on the fractional plasma leakage. Given the material properties, the fractional leakage reaches a maximum at a particular grade of the bifurcating vascular tree.     

Numerical simulation of non-Newtonian blood flow dynamics in human thoracic aorta

Three non-Newtonian blood viscosity models plus the Newtonian one are analysed for a patient-specific thoracic aorta anatomical model under steady-state flow conditions via wall shear stress (WSS) distribution, non-Newtonian importance factors, blood viscosity and shear rate. All blood viscosity models yield a consistent WSS distribution pattern. The WSS magnitude, however, is influenced by the model used. WSS is found to be the lowest in the vicinity of the three arch branches and along the distal walls of the branches themselves. In this region, the local non-Newtonian importance factor and the blood viscosity are elevated, and the shear rate is low. The present study revealed that the Newtonian assumption is a good approximation at mid-and-high flow velocities, as the greater the blood flow, the higher the shear rate near the arterial wall. Furthermore, the capabilities of the applied non-Newtonian models appeared at low-flow velocities. It is concluded that, while the non-Newtonian power-law model approximates the blood viscosity and WSS calculations in a more satisfactory way than the other non-Newtonian models at low shear rates, a cautious approach is given in the use of this blood viscosity model. Finally, some preliminary transient results are presented.