Historical and environmental influences on hedgerow snail faunas

In three areas of the English Midlands, composition and diversity of hedgerow snail faunas are influenced both by historical and environmental differences between hedges. Soil aciditv and climate are the most important environmental factors. Hedges originating in or near woodland have richer faunas than those planted in open fields, and some snail species are indicators of woodland origin. Snail diversity also increases with the age of the hedge, but this effect is slight in hedges over 100 years old. It is suggested that these differences are primarily due to the poor dispersal of snails rather than to existing environmental differences between hedges of differing age and origins, and the results are compared with the very similar ones obtained for plants. Historical influences on the distribution ol slow-dispersing organisms may be of very general importance, even in comparisons of adjacent habitats with considerable temporal stability.     

The importance of shelter for butterflies in open landscapes

In Britain, much emphasis has been placed on conserving butterfly species in specialized habitats, since this is where most of its threatened butterflies exist, whilst the wider countryside has been largely overlooked. However, there is increasing awareness that small improvements to the dominant landscape could potentially reap huge benefits to the populations of many of Britains butterfly species. Recent studies have also stressed the importance of the landscape scale in the conservation of butterflies in small fragmented habitats. In this paper, we examine data from a variety of sources and conclude that the importance of shelter in open landscapes may be underestimated since recording is often restricted to the optimum conditions suggested by the Butterfly Monitoring Scheme. In less favourable conditions, butterflies may place greater reliance on those components of the landscape offering shelter. In light of the current policy of agricultural de-intensification we discuss how modifications to our current landscapes could benefit a wide range of species.     

植物篱篱前淤积带与篱下土坎土壤水库和抗剪性能对比研究

为探究紫色土坡地植物篱篱前淤积带与篱下土坎处土壤贮水能力和抗剪性能的差异及变化规律，选取四川遂宁水土保持试验站10°新银合欢植物篱小区（L10）、10°香根草植物篱小区（V10）和15°香根草植物篱小区（V15），分上、中、下坡采集篱前淤积带和篱下土坎（无下坡）0-30 cm耕层土壤，测定土壤基本物理性质和土壤抗剪强度，计算土壤水库总库容、滞洪库容、内摩擦角φ和粘聚力c。结果表明：（1）同一篱带，篱前淤积带土壤保水贮水能力优于篱下土坎，其中篱前淤积带土壤自然含水率较之篱下土坎显著高6.52%-12.13%。（2）同一篱带，篱下土坎土壤透气性以及土壤抗剪性能均优于篱前淤积带，其中篱下土坎土壤非毛管孔隙度较之篱前淤积带显著高5.61%-57.70%。（3）同一小区，篱前淤积带保水贮水能力均表现为下坡 > 中坡 > 上坡，而篱下土坎均为上坡>中坡。其中V15小区上述趋势最明显，其下坡篱前淤积带（上坡篱下土坎）的土壤总库容和滞洪库容分别为上坡篱前淤积带（均为中坡篱下土坎）的1.04倍和1.03倍（1.02倍）。（4）同一小区，篱前淤积带土壤内摩擦角、粘聚力c和抗剪强度均表现为上坡 > 中坡 > 下坡，篱下土坎均为上坡>中坡。其中V10小区上述趋势最明显，其上坡篱前淤积带（上坡篱下土坎）上述指标依次为下坡篱前淤积带（均为中坡篱下土坎）的1.06、1.09倍和1.05倍（1.04倍）。（5）一个雨季前后篱前淤积带和篱下土坎土壤透气性、保水贮水能力及抗剪性能均无显著变化。     

The use of protein characteristics to assess the retrievability of ancient DNA from ancient bones

The ability to retrieve DNA from ancient specimens has been one of the greatest achievements of the past decade, and has opened a totally new field of research with applications in seemingly distant domains such as archeobotany, the molecular phylogeny of extinct genomes, human paleopathology and the genetic of ancient human populations. However, extraction of ancient DNA has often a very low rate of success, prompting researchers to develop screening methods for the selection of promising specimens. With this goal in mind, we studied the amino acid content of nine human bones of ancient origin. We demonstrate that a single HPLC chromatogram is indicative of the integrity of ancient bone proteins. Among five specimens containing amplifiable DNA, four exhibited a protein content similar to that of contemporary bone protein content. Three of the four specimens, from which we were unable to extract any amplifiable DNA, had an amino acid content strikingly different from that of contem-porary bone. A non-parametric statistical test, Kendall's tau, was used to show that protein content and PCR products, are probably correlated (at a 95% confidence level). In addition, the D/L Asp and D/L Glu racemization ratios obtained are indicative of the presence of ancient organic compounds. We propose that protein analysis should be systematically performed in studies where there are many samples in order to select the specimens that are most likely to contain retrievable ancient DNA.     

Mammals,agri‐environment schemes and set‐aside – what are the putative benefits?

• 1 The impacts of agricultural intensification on farmland wildlife have been the subject of increasing concern, particularly over the last two decades. Population declines have occurred for a number of mammalian species, sometimes drastically so, and changes in farming practice are believed to be significant contributory factors.
• 2 The major policy instruments for delivering environmental benefits on farmland are agri‐environment schemes. These encourage farmers to adopt more environmentally sensitive farming practices to promote farmland biodiversity. Additionally, compulsory set‐aside, which reduces agricultural surplus, could also have positive impacts on wildlife. In this paper we consider some of the putative benefits of agri‐environment schemes and set‐aside for mammals.
• 3 We review how establishment and management options within agri‐environment schemes and set‐aside might affect habitat resources for mammals. For example, conservation headlands increase plant and invertebrate resources within the crop edge for mammals such as wood mice. Grassy field margins can support communities of smaller mammals, and hedgerows may act as important commuting and hunting routes. Their potential will depend on factors such as seed mixtures used, timing and severity of cutting, and length of time they have been in place.
• 4 At a farm level, habitat heterogeneity may be increased through organic agriculture, which is supported by some agri‐environment schemes. Studies suggest significant benefits to mammals, including wood mice and bats. However, it is increasingly recognized that effective conservation of farmland mammals must seek solutions at the landscape scale, addressing such issues as habitat connectivity between farms. One approach may be the better targeting of scheme agreements.
• 5 We suggest that agri‐environment schemes and set‐aside can contribute to the conservation of mammals on farmland. Recent policy changes are likely to have further positive impacts on farmland wildlife but appropriate mammal monitoring programmes must be developed rigorously to assess their effects.

     

Independent effects of habitat loss,habitat fragmentation and structural connectivity on forest‐dependent birds

Aim Habitat loss and fragmentation are amongst the greatest threats to biodiversity world‐wide. However, there is still little evidence on the relative influence of these two distinct processes on biodiversity, and no study, to date, has investigated the independent contribution of structural connectivity in addition to habitat loss and fragmentation. The aim of this study is to evaluate the independent effects of habitat loss (the decrease in total amount of habitat), habitat fragmentation per se (habitat subdivision) and structural connectivity (in the form of hedgerow networks) on the distribution of seven resident forest‐dependent birds in central Italy. Location Central Italy. Methods We strategically selected 30 landscapes (each of 16 km² in size) with decreasing total amount of forest cover and with contrasting configuration of patches and contrasting lengths of hedgerow networks. Presence/absence of birds in each landscape unit was studied through point counts. Results The amount of forest cover in the landscape had the strongest relative influence on birds’ occupancy, whilst habitat subdivision played a negligible role. Structural connectivity and the geographic position of the landscape unit played a relatively important role for four species. Main conclusions Our study shows the importance of disentangling the contribution of different landscape properties in determining distribution patterns. Our results are consistent with the fact that halting habitat loss and carrying out habitat restoration should be conservation priorities, since habitat loss is the main factor affecting the distribution of the target species; implementation of structural connectivity through hedgerows, instead, should be evaluated with caution since its contribution is secondary to the predominant role of habitat loss.     

Vegetated Field Margins in Mexico: Their History, Structure and Function, and Management

We explore the history, structure and function, and management of vegetated field margins, particularly hedgerows, in Mexico since the pre-Hispanic period. We then focus on the current agricultural landscape in El Bajío, central Mexico, describing in detail the abundance, composition, and management of existing hedgerows. These vegetated field margins can be traced to the pre-Hispanic period, especially in central Mexico, where Indians planted hedgerows, living fences, and terraces, mainly to prevent erosion. After the Spanish Conquest, some of these structures disappeared, but in many cases, new plant species were incorporated into the remaining field boundaries. Today, vegetated field boundaries are adjacent to crop fields and, in some places, they form networks similar to those seen in Europe. Farmers actively manage hedgerows for a variety of useful products and in so doing provide habitat and dispersal routes for native plants and animals.     

古代DNA研究实验技术

现代分子生物技术的发展,使从古代样品中获取微量DNA成为现实。在过去的十多年里,古DNA研究取得了重大进展,但实验方案还需要加以改进,其结果的分析与推论也需要多方面的验证。本综述着重介绍了古DNA研究的实验技术及可靠性分析。 Experimental Techniques for Ancient DNA Research YANG Shu-juan1,LAI Xu-long1,2,TANG Xian-hua1,SHENG Gui-lian1,2 1.Faculty of Earth Sciences,China University of Geosciences,Wuhan,430074,China; 2.Institute of Life Sciences,China University of Geosciences,Wuhan,430074,China Abstract:The development of modern molecular biological techniques makes it possible to study minimum DNA from ancient materials.During past decade,a lot of significant achievements on ancient DNA research have been made in many fields especially in molecular evolutionary biology.The nature of degradation and contamination of ancient DNA from ancient biological materials pose a dominating problem in ancient DNA research.Therefore,the experiments should be modified based on the modern molecular techniques and more factors should be considered when the results are analyzed.In this paper,authors review the general experimental protocols on sampling,extraction and amplification as well as authenticity of ancient DNA. Key words：ancient DNA;authenticity;ancient DNA techniques     

植物古汉名渊源及蕴含的古文化

本文通过植物古汉名训诂研究，探讨了一些鲜为人知的植物古汉名命名的渊源，以例析形式阐明植物古汉名命名的几种主要类型，并挖掘基因中有价值的古代文化。     

Egg mortality in the pine processionary moth: habitat diversity,microclimate and predation effects

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A consensus view of the proteome of the last universal common ancestor

The availability of genomic and proteomic data from across the tree of life has made it possible to infer features of the genome and proteome of the last universal common ancestor (LUCA). A number of studies have done so, all using a unique set of methods and bioinformatics databases. Here, we compare predictions across eight such studies and measure both their agreement with one another and with the consensus predictions among them. We find that some LUCA genome studies show a strong agreement with the consensus predictions of the others, but that no individual study shares a high or even moderate degree of similarity with any other individual study. From these observations, we conclude that the consensus among studies provides a more accurate depiction of the core proteome of the LUCA and its functional repertoire. The set of consensus LUCA protein family predictions between all of these studies portrays a LUCA genome that, at minimum, encoded functions related to protein synthesis, amino acid metabolism, nucleotide metabolism, and the use of common, nucleotide‐derived organic cofactors.     

农林复合系统中灌木篱墙对异色瓢虫种群分布的影响

以北京大兴农区农林复合系统为对象,围绕灌木篱墙(沙棘绿篱和杨树萌条带)上和麦田中的主要捕食性天敌——异色瓢虫对栖息地的选择趋向及灌木篱墙对异色瓢虫种群分布的影响进行了研究。结果表明:(1)小麦生长前期(返青期至抽穗期或扬花期)灌木篱墙上异色瓢虫种群密度是麦田的3.25—9.57倍,是异色瓢虫由越冬地向麦田过渡前的主要栖息地,是农林复合系统中异色瓢虫种群建立的"种库";(2)异色瓢虫对栖息生境有较强的选择性,明显趋向于蚜虫密集分布的生境,小麦生长前期趋向于灌木篱墙,小麦生后期(扬花期或灌浆期至完熟期)趋向于麦田,整个小麦生长期内异色瓢虫种群在不同生境斑块间存在明显的移动现象;(3)麦收后,邻近麦田的杨树萌条带上异色瓢虫种群密度相比于完熟期增加了42%,为异色瓢虫提供了重要的庇护场所。     

Spatial distribution of bibionid larvae in agricultural grassland

The distribution of bibionid larvae in agricultural grassland was investigated. They tend to occur sporadically and at low population density. More detailed sampling within a field showed that numbers were highest adjacent to a hedgerow with most being found 6–11 m from the hedge. Log variance/log mean relationships were established for counts of Bibio johannis and Dilophus febrilis larvae collected from soil cores in grassland. Both species were highly aggregated. An area of grassland (160 cm × 80 cm) was divided into 128 soil blocks and B. johannis larvae extracted. Almost all larvae were associated with aggregations. The two-phase mozaic method of Pielou (1974) was applied to larval counts from different sized concentrically collected soil cores. Larval patches were not randomly distributed. Time-lapse video studies of bibionid larvae were made and showed both aggregation and processional behaviour. This was associated with chemical stimulation which is probably used to maintain larval groupings in the field. There was evidence for two levels of aggregation. The first is due to groups of larvae arising from eggs laid by a single female and the second, larger scale, aggregation is due to factors that influence the distribution of adult flies.     

Ancient Human Genomes and Environmental DNA from the Cement Attaching 2,000-Year-Old Head Lice Nits

Over the past few decades, there has been a growing demand for genome analysis of ancient human remains. Destructive sampling is increasingly difficult to obtain for ethical reasons, and standard methods of breaking the skull to access the petrous bone or sampling remaining teeth are often forbidden for curatorial reasons. However, most ancient humans carried head lice and their eggs abound in historical hair specimens. Here we show that host DNA is protected by the cement that glues head lice nits to the hair of ancient Argentinian mummies, 1,500–2,000 years old. The genetic affinities deciphered from genome-wide analyses of this DNA inform that this population migrated from north-west Amazonia to the Andes of central-west Argentina; a result confirmed using the mitochondria of the host lice. The cement preserves ancient environmental DNA of the skin, including the earliest recorded case of Merkel cell polyomavirus. We found that the percentage of human DNA obtained from nit cement equals human DNA obtained from the tooth, yield 2-fold compared with a petrous bone, and 4-fold to a bloodmeal of adult lice a millennium younger. In metric studies of sheaths, the length of the cement negatively correlates with the age of the specimens, whereas hair linear distance between nit and scalp informs about the environmental conditions at the time before death. Ectoparasitic lice sheaths can offer an alternative, nondestructive source of high-quality ancient DNA from a variety of host taxa where bones and teeth are not available and reveal complementary details of their history.     

Pollen availability and abundance of predatory phytoseiid mites on natural and secondary hedgerows

Mites occurring on a number ofnatural and secondary (i.e., planted) hedgerowslocated in north-eastern Italy were monitoredwith particular attention being paid tophytoseiids (Acari: Phytoseiidae). Pollendiversity and abundance were analysed tohighlight potential relationships betweenpollen availability and phytoseiids. Secondaryhedgerows were structured in modules containinga single species (field maple, hornbeam,dogwood, hazel, and elderberry) andmodules containing a mixture of theabove-mentioned species. These hedgerows werelocated in an experimental farm where they werecontiguous to a vineyard. Natural hedgerowswere located in the same area. The pollen ofPoaceae was the most important component ofnon-arboreal pollen (NAP), and that ofelderberry of arboreal pollen (AP). Pollendiversity was higher on natural than onsecondary hedgerows. Generally, pollendensities reached relatively high levels fromlate April to late June and decreased insummer. Pollen was more abundant on naturalthan on secondary hedgerows and phytoseiidabundance showed a similar trend. On elderberryand hornbeam in natural hedgerows a potentialrelationship between pollen availability andthe abundance of phytoseiids, in particular ofEuseius finlandicus (Oudemans) was found.Experimental pollen applications increased thefecundity and the abundance of this species.     

Resurrecting ancient animal genomes: the extinct moa and more

Recently two developments have had a major impact on the field of ancient DNA (aDNA). First, new advances in DNA sequencing, in combination with improved capture/enrichment methods, have resulted in the recovery of orders of magnitude more DNA sequence data from ancient animals. Second, there has been an increase in the range of tissue types employed in aDNA. Hair in particular has proven to be very successful as a source of DNA because of its low levels of contamination and high level of ancient endogenous DNA. These developments have resulted in significant advances in our understanding of recently extinct animals: namely their evolutionary relationships, physiology, and even behaviour. Hair has been used to recover the first complete ancient nuclear genome, that of the extinct woolly mammoth, which then facilitated the expression and functional analysis of haemoglobins. Finally, we speculate on the consequences of these developments for the possibility of recreating extinct animals.     

Mutations induced by ancient DNA extracts?

We have investigated whether some factor in ancient DNA extractsinduces site-specific mutations in modern DNA. We find no evidencefor higher mutation rates when extracts from three differentPleistocene mammals are added to modern DNA than when wateror extraction blanks are added. We also fail to find evidencethat any such factor affects ancient DNA sequences determinedfrom the same extracts. This as well as the patterns of nucleotidesubstitutions seen in DNA sequences determined from hundredsof other specimens leads us to doubt that a previously unknownmutagenic factor can be a general feature of extracts from oldtissues.