Insights from a sea lamprey into the evolution of neural crest gene regulatory network

The neural crest is a vertebrate innovation that forms at the embryonic neural plate border, transforms from epithelial to mesenchymal, migrates extensively throughout the embryo along well-defined pathways, and differentiates into a plethora of derivatives that include elements of peripheral nervous system, craniofacial skeleton, melanocytes, etc. The complex process of neural crest formation is guided by multiple regulatory modules that define neural crest gene regulatory network (NC GRN), which allows the neural crest to progressively acquire all of its defining characteristics. The molecular study of neural crest formation in lamprey, a basal extant vertebrate, consisting in identification and functional tests of molecular elements at each regulatory level of this network, has helped address the question of the timing of emergence of NC GRN and define its basal state. The results have revealed striking conservation in deployment of upstream factors and regulatory modules, suggesting that proximal portions of the network arose early in vertebrate evolution and have been tightly conserved for more than 500 million years. In contrast, certain differences were observed in deployment of some neural crest specifier and downstream effector genes expected to confer species-specific migratory and differentiation properties.     

Insights into neural stem cell biology from flies

Drosophila neuroblasts are similar to mammalian neural stem cells in their ability to self-renew and to produce many different types of neurons and glial cells. In the past two decades, great advances have been made in understanding the molecular mechanisms underlying embryonic neuroblast formation, the establishment of cell polarity and the temporal regulation of cell fate. It is now a challenge to connect, at the molecular level, the different cell biological events underlying the transition from neural stem cell maintenance to differentiation. Progress has also been made in understanding the later stages of development, when neuroblasts become mitotically inactive, or quiescent, and are then reactivated postembryonically to generate the neurons that make up the adult nervous system. The ability to manipulate the steps leading from quiescence to proliferation and from proliferation to differentiation will have a major impact on the treatment of neurological injury and neurodegenerative disease.     

Insights from amphioxus into the evolution of vertebrate cartilage

Central to the story of vertebrate evolution is the origin of the vertebrate head, a problem difficult to approach using paleontology and comparative morphology due to a lack of unambiguous intermediate forms. Embryologically, much of the vertebrate head is derived from two ectodermal tissues, the neural crest and cranial placodes. Recent work in protochordates suggests the first chordates possessed migratory neural tube cells with some features of neural crest cells. However, it is unclear how and when these cells acquired the ability to form cellular cartilage, a cell type unique to vertebrates. It has been variously proposed that the neural crest acquired chondrogenic ability by recruiting proto-chondrogenic gene programs deployed in the neural tube, pharynx, and notochord. To test these hypotheses we examined the expression of 11 amphioxus orthologs of genes involved in neural crest chondrogenesis. Consistent with cellular cartilage as a vertebrate novelty, we find that no single amphioxus tissue co-expresses all or most of these genes. However, most are variously co-expressed in mesodermal derivatives. Our results suggest that neural crest-derived cartilage evolved by serial cooption of genes which functioned primitively in mesoderm.     

Insights into panicoid inflorescence evolution

Inflorescence forms can be described by different combinatorial patterns of meristem fates (indeterminate versus determinate). In theory, the model predicts that any combination is possible. Whether this is true for grasses is unknown. In this paper, the subfamily Panicoideae s.s. (panicoid grasses) was chosen as the model group to investigate this aspect of grass inflorescence evolution. We have studied the inflorescence morphology of 201 species to complement information available in the literature. We have identified the most recurrent inflorescence types and character states among panicoids. Using multivariate approaches, we have indentified correlations among different inflorescence character states. By phylogenetic reconstruction methods we have inferred the patterns of panicoid inflorescence evolution. Our results demonstrate that not all theoretical combinatorial patterns of variation are found in panicoids. The fact that each panicoid lineage has a unique pattern of inflorescence evolution adds an evolutionary component to combinatorial model.     

Insights into vertebrate evolution from the chicken genome sequence

The chicken has recently joined the ever-growing list of fully sequenced animal genomes. Its unique features include expanded gene families involved in egg and feather production as well as more surprising large families, such as those for olfactory receptors. Comparisons with other vertebrate genomes move us closer to defining a set of essential vertebrate genes.     

Insights into vertebrate evolution from the chicken genome sequence

The chicken has recently joined the ever-growing list of fully sequenced animal genomes. Its unique features include expanded gene families involved in egg and feather production as well as more surprising large families, such as those for olfactory receptors. Comparisons with other vertebrate genomes move us closer to defining a set of essential vertebrate genes.     

Insights into the concept of fish welfare

Fish welfare issues are predicated on understanding whether fish are sentient beings. Therefore, we analyzed the logic of the methodologies used for studying this attribute. We conclude that empirical science is unable to prove or to disprove that fish are sentient beings. Thus, we propose a combined ethical-scientific approach for considering fish as sentient beings. The most difficult ongoing question is to determine which conditions fish prefer. Approaches to assess fish preferences should be rigorously and cautiously employed. In light of these considerations, attempts to establish physiological standards for fish welfare are discouraged, and a preference-based definition of fish welfare is proposed.     

Hyperthermic aphids: Insights into behaviour and mortality

Although the impact of warming on winter limitation of aphid populations is reasonably well understood, the impacts of hot summers and heat wave events are less clear. In this study, we address this question through a detailed analysis of the thermal ecology of three closely related aphid species: Myzus persicae, a widespread, polyphagous temperate zone pest, Myzus polaris, an arctic aphid potentially threatened by climate warming, and, Myzus ornatus, a glasshouse pest that may benefit from warming. The upper lethal limits (ULT₅₀) and heat coma temperatures of the aphid species reared at both 15 and 20 °C did not differ significantly, suggesting that heat coma is a reliable indicator of fatal heat stress. Heat coma and CT_max were also measured after aphids were reared at 10 and 25 °C for one and three generations. The extent of the acclimation response was not influenced by the number of generations. Acclimation increased CT_max with rearing temperature for all species. The acclimation temperature also influenced heat coma; this relationship was linear for M. ornatus and M. polaris but non-linear for M. persicae (increased tolerance at 10 and 25 °C). Bacteria known generically as secondary symbionts can promote thermal tolerance of aphids, but they were not detected in the aphids studied here. Assays of optimum development temperature were also performed for each species. All data indicate that M. persicae has the greatest tolerance of high temperatures.     

Insights into mechanisms of antibody-mediated immunity from studies with Cryptococcus neoformans

At first glance Cryptococcus neoformans appears an unlikely microbe to provide a new understanding of mechanisms of antibody-mediated immunity (AMI), because it is a facultative intracellular fungal pathogen for which the role of naturally acquired AMI in host defense is uncertain. However, numerous studies have now established that certain antibodies (Abs) against C. neoformans are protective in certain hosts. Studies with Abs to C. neoformans have provided new insights into AMI and generated new precedents with implications for other pathogens. The following concepts have emerged: 1) susceptibility to C. neoformans may be related to qualitative and quantitative aspects of the Ab response; 2) protective monoclonal Abs can be generated against pathogens even when the role of humoral immunity is uncertain; 3) Abs to C. neoformans mediate protection by immunomodulatory effects, thereby linking Ab efficacy to the overall host immune response; 4) Ab efficacy is critically dependent on fine specificity, which in turn is affected by immunoglobulin variable region usage, somatic mutation and constant region usage; 5) the efficacy of passive Ab therapy is a function of Ab dose and infecting innoculum, with lack of efficacy at the extremes of Ab concentration; 6) Ab-mediated toxicity resulting from antigen-Ab complex-induced release of platelet activating factor is isotype dependent. Observations with C. neoformans have stimulated a reappraisal of the role of humoral immunity for other pathogens and highlighted the limitations in current methods of assessing the role of Ab in host defense.     

Ontogeny and evolution of electric organs in gymnotiform fish

In order to further our understanding of the evolution of electric organs in the Neotropical gymnotiform fish, we studied the ontogeny of the electric organs in eight species. In Eigenmannia virescens, Sternopygus macrurus, and Apteronotus leptorhynchus the earliest electrocytes are located between muscle fibres of the hypaxial muscle (Type A electrocytes). We present arguments that these Type A electrocytes represent the plesiomorphic condition. In S. macrurus, in addition to the electrocytes in the hypaxial muscle, additional electrocytes were found in the epaxial muscle. In A. leptorhynchus a neurogenic organ develops later during ontogeny in the medial part of the hypaxial muscle in addition to the early myogenic organ. In E. virescens the early electrocytes in hypaxial muscle will degenerate later during ontogeny, and this organ will be replaced functionally by electrocytes located in the caudal appendage and below the hypaxial muscle. In Electrophorus electricus, two Gymnotus species, Rhamphichthys sp., and Brachyhypopomus pinnicaudatus the first electrocytes were found below the hypaxial muscle (Type B electrocytes); they are assumed to be the more derived stage. In R. sp., and B. pinnicaudatus the electrocytes of Type B developed directly into the adult organ. In the two Gymnotus ssp. electrocytes were also found in the medial part of the organ in-between muscle fibres of the hypaxial muscle. In E. electricus a germinative zone was observed to separate from the ventral myotome. This zone is generating electrocytes continuously so that, as a consequence, the relative proportion of electric organ to muscle increases greatly. In 45 mm long E. electricus a separation of low voltage orientation pulses and high voltage trains of pulses (shocks) was observed. A first appearance of Hunter’s organ was found in 140 mm specimens of E. electricus. The first discharges of all species studied were head- positive, with the exception of R. sp., which produced a triphasic discharge, its main component, however, being head-positive. The arguments presented indicate that the Type A electrocytes found in E. virescens, S. macrurus, and A. leptorhynchus would represent the plesiomorphic condition. On the basis of the evidence regarding the formation, cytological appearance, and anatomical location, as well as the early electrical recordings, we would hypothesise that during the evolution of gymnotiforms wave type species evolved first, and in a second step pulse type species followed. This view, however, is corroborated by only some phylogenetic hypotheses.     

Insights into the mechanisms of homologous recombination from the structure of RuvA

The recent structure determination of RuvA has provided the first insights into the structural basis for its interaction with Holliday junction DNA. Multiple copies of a helix-hairpin-helix motif which line the four grooves between the monomers in the tetrameric structure are thought to be involved in the interaction of the protein with its DNA target. This suggests that the four arms of the junction are held by RuvA in a fourfold symmetric arrangement and has fuelled ideas on the way in which components of the Ruv complex combine to catalyse the process of homologous recombination     

At the interface of behaviour,ecology and evolution: Insights from the world of fishes

We are pleased to present this special issue of Current Zoology entitled Behaviour,Ecology and Evolution of Fishes.The goal of this special issue is to showca...     

A phylogenetic approach to the evolution of fish behaviour

Summary WHAT HAVE WE LEARNED?As I indicated in the introduction, this is a non-traditional review. I have not asked What generalizations can we draw about the evolution of fish behaviour based upon information gleaned from phylogenetically based studies? Instead, I have presented detailed discussions of those studies. The reason for this approach is quite simple: if all studies in such a wide area of investigation can be discussed at length in one relatively short paper, then the database is not large enough to warrant the move from information collection to information synthesis. The purpose of this review, then, has been to capture the enthusiasm of the phylogenetically orientated fish ethologists and to highlight their discoveries, in the hopes that this will stimulate further research. If successful, the next review of phylogeny and the evolution of fish behaviour will follow a more familiar pathway.Although the database does not allow us to draw generalizations about the evolution of specific behavioural characters in fishes, the studies to date have uncovered a number of more general evolutionary insights. First, phylogenetic conservatism is evident at all levels of analysis, from the muscle activity patterns that underlie behavioural characters (Lauder 1986; Westneat and Wainwright, 1989; Westneat 1991; Wainwright and Lauder, 1992) through foraging preferences (Winterbottom and McLennan, 1993) and egg deposition strategies (Johnston and Page, 1992) to parental care (Stiassney and Gerstner, 1992). This conservatism forms the backbone against which the appearance of novel behaviours (apomorphies) can be highlighted. Each species' behavioural repertoire is thus a unique combination of very old (plesiomorphic), relatively old (synapomorphic) and recently derived (autapomorphic) characters. Second, phylogenetic analysis has allowed us to investigate models of behavioural evolution that were constructed from a variety of microevolutionary fitness parameters. The macroevolutionary patterns have corroborated some parts of those models (transition from biparental to female-only care: Gross and Sargent, 1985; Stiassney and Gerstner, 1992; transition from fresh water to anadromy: Gross et al., 1988; Stearley, 1992) and highlighted other parts of the models that would benefit from a re-examination of the basic assumptions (transition from biparental or female-only to male-only care: Gross and Sargent, 1985; Stiassney and Gerstner, 1992). Third, expanding our evolutionary perspective to include clades of organisms has allowed researchers to formulate new theories of behavioural evolution incroporating information about the patterns of character origin and diversification as well as information about character maintenance (Ryan, 1900a; Ryan and Rand, 1990; Ryan et al., 1990a). And finally, examination of macroevolutionary correlations between the origin and diversification of behavioural characters has allowed us to make predictions about the forces influencing the evolution of those characters that can then be tested experimentally (McLennan et al., 1988; Basolo, 1990a,b, 1991; McLennan, 1991). The studies presented in this paper have spanned a wide theoretical arena. They have revealed a number of interesting insights about the evolution of behaviour, and in so doing, have demonstrated the hybrid vigour of a research programme based upon integrating phylogeny and experimental ethology, phylogeny and functional morphology, and phylogeny and behavioural ecology. The question to be answered now is:WHERE DO WE GO FROM HERE?If this fledgling research programme is to remain vigorous, we need to do two things. First, channels of communication must be re-opened between systematists and ethologists. Specifically, we need to encourage systematists to construct robust phylogenetic trees for groups of fish that either have already been well studied behaviourally and ecologically, or would be of interest to ethologists if a phylogeny existed (the belontiids, poeciliids, and rivulines come to mind, to name just a few). In the absence of such critical information, behavioural ecologists are faced with the option of investigating their ethological data based upon trees reconstructed from old classification schemes or phenograms, neither of which produces a robust phylogenetic hypothesis of genealogy. Researchers who have opted for this approach preface their investigations with the caveat that the analysis and conclusions are only preliminary because of the unsatisfactory nature of the phylogenetic hypotheses available to them. The importance of a preliminary analysis cannot be understimated for researchers who are frustrated by their inability to apply the phylogenetic approach to their burgeoning data sets. It is, however, critical to remember that a preliminary analysis can, at best, produce only tentative results. If the data themselves are both incomplete and ambiguous, this will compound the problems arising from the absence of a rigorous phylogenetic framework, which will produce a confusing picture of behavioural evolution. It is also important to realize that even the most robust phylogenetic tree is still only a hypothesis of genealogical relationships, a hypothesis that may change with the discovery of new data.Second, links must be forged between comparative ethology and behavioural ecology. All of the examples discussed in this paper uncovered a phylogenetic component in patterns of behavioural origin and diversification. The discovery of this phylogenetic influence, however, is only the first step in developing a comprehensive evolutionary picture because phylogenetic patterns can tell us very little about the processes underlying those patterns. In order to explore questions of process, we must incorporate information about the fitness parameters of behavioural characters into our evolutionary picture. For example, optimizing such parameters onto a phylogenetic tree may allow us to investigate whether there are any macroevolutionary correlations between the origin and divergence of a behaviour and a change in one (or more) of the fitness components. We must also incorporate information about the genetic, developmental and physiological control of behaviour into our comparative framework (Brooks and McLennan, 1991; Willis et al., 1991; Lauder et al., 1993). This is perhaps the most neglected aspect of comparative ethology and will thus be the most difficult to remedy. Details of the genetic and developmental systems underlying behaviour are known for only a handful of taxa and for only a handful of behaviours within those taxa. The physiological control of behaviour is better studied, but has yet to be placed within a phylogenetic context (but see e.g. Stearley, 1992, for an example of the insights that can be gained from such a study). The results of such a multilevel approach will be a more robust estimate of the relative roles for the effects of both phylogenetic heritage and environmental factors in the evolution of behaviour in fishes.     

Insights into the mechanisms of sister chromatid exchange formation

The DNA lesions responsible for the formation of sister chromatid exchanges (SCEs) have been the object of research for a long time. SCEs can be visualized by growing cells for either two rounds of replication in the presence of 5-bromo-2'-deoxyuridine (BrdU) or for one round with BrdU and the next without. If BrdU is added after cells were treated with a DNA-damaging agent, the effect on SCEs can only be analyzed in the second post-treatment mitosis. If one wishes to analyze the first post-treatment mitosis, cells unifilarily labeled with BrdU must be treated. Due to the highly reactive bromine atom, BrdU interacts with such agents like ionizing and UV radiation enhancing the frequency of SCEs. However, its precise role in this process was difficult to assess for a long time, because no alternative technique existed that allowed differential staining of chromatids. We have recently developed a method to differentially label sister chromatids with biotin-16-2'-deoxyuridine-5'-triphosphate (biotin-dUTP) circumventing the disadvantage of BrdU. This technique was applied to study the SCEs induced by ionizing and UV radiation as well as by mitomycin C, DNaseI and AluI. This article is a review of the results and conclusions of our previous studies.