Ten microsatellite loci for the reef‐building coral Acropora millepora (Cnidaria,Scleractinia) from the Great Barrier Reef,Australia

Here we present nine novel, polymorphic microsatellite loci developed for the scleractinian coral Acropora millepora (Acroporidae) from the Great Barrier Reef. In addition, we have assessed the specificity and polymorphism of five microsatellite loci previously developed for a Caribbean congener and one locus developed for an Indo‐Pacific congener. Only one of the latter six loci produced reliable results, yielding a total of 10 polymorphic microsatellite loci for A. millepora. Variability was tested on 20–23 individuals from a single population, plus another ～10 individuals from each of three different populations, resulting in five to 20 alleles per locus.     

Symbiodiniaceae diversity and characterization of palytoxin in various zoantharians (Anthozoa,Hexacorallia)

Organisms Diversity & Evolution - Anemone-like animals belonging to the order Zoantharia are common anthozoans widely distributed from shallow to deep tropical and subtropical waters. Some...     

Revision of the coral genus Acropora (Scleractinia: Astrocoeniina: Acroporidae) in Indonesia

The coral genus Acropora is reviewed from Indonesia for the first time, following detailed collections made at 131 sites and additional material collected from approximately 40 sites throughout the archipelago during the period 1993–6. Eighty-three species are recorded, four of these ( Acropora halmaherae, A. awi, A. plumosa and A. simplex ) new to science, six first described in 1994 and six in 1997. Records are compared with specimen-based records from localities worldwide. The species of Acrokora occurring in Indonesian waters include five recorded only from the Indian Ocean and Indonesia, seven recorded only from the Pacific Ocean, South China Sea and Indonesia, and a further 10 species apparently endemic to Indonesia, as well as widespread Indo-Pacific species. Two species ( A. jacquelineae Wallace, 1994 and A. batunai Wallace, 1996) are recorded only from north central Indonesia and Papua New Guinea, and two species ( A. russelli Wallace, 1994 and A. turaki Wallace, 1994) only from north central Indonesia and north western Australia. The findings contribute to a new view of the corals of the Indo-Pacific 'centre of diversity' as a composite fauna with origins in a number of events in space and time.     

Species and population genomic differentiation in Pocillopora corals (Cnidaria,Hexacorallia)

Correctly delimiting species and populations is a prerequisite for studies of connectivity, adaptation and conservation. Genomic data are particularly useful to test species differentiation for organisms with few informative morphological characters or low discrimination of cytoplasmic markers, as in Scleractinians. Here we applied Restriction site Associated DNA sequencing (RAD-sequencing) to the study of species differentiation and genetic structure in populations of Pocillopora spp. from Oman and French Polynesia, with the objectives to test species hypotheses, and to study the genetic structure among sampling sites within species. We focused here on coral colonies morphologically similar to P. acuta (damicornis type β). We tested the impact of different filtering strategies on the stability of the results. The main genetic differentiation was observed between samples from Oman and French Polynesia. These samples corresponded to different previously defined primary species hypotheses (PSH), i.e., PSHs 12 and 13 in Oman, and PSH 5 in French Polynesia. In Oman, we did not observe any clear differentiation between the two putative species PSH 12 and 13, nor between sampling sites. In French Polynesia, where a single species hypothesis was studied, there was no differentiation between sites. Our analyses allowed the identification of clonal lineages in Oman and French Polynesia. The impact of clonality on genetic diversity is discussed in light of individual-based simulations.

     

Gross and microscopic morphology of lesions in Cnidaria from Palmyra Atoll, Central Pacific

We conducted gross and microscopic characterizations of lesions in Cnidaria from Palmyra Atoll, Central Pacific. We found growth anomalies (GA) to be the most commonly encountered lesion. Cases of discoloration and tissue loss were rare. GAs had a focal or multi-focal distribution and were predominantly nodular, exophytic, and umbonate. In scleractinians, the majority of GAs manifested as hyperplasia of the basal body wall (52% of cases), with an associated absence or reduction of polyp structure (mesenteries and filaments, actinopharynx and tentacles), and depletion of zooxanthellae in the gastrodermis of the upper body wall. In the soft corals Sinularia sp. and Lobophytum sp., GAs exclusively manifested as prominent hyperplasia of the coenenchyme with an increased density of solenia. In contrast to scleractinians, soft coral GAs displayed an inflammatory and necrotizing component with marked edema of the mesoglea, accompanied by infiltrates of variably-sized granular amoebocytes. Fungi, algae, sponges, and Crustacea were present in some scleractinian GAs, but absent in soft coral GAs. Fragmentation of tissues was a common finding in Acropora acuminata and Montipora cf. dilatata colonies with tissue loss, although no obvious causative agents were seen. Discoloration in the zoanthid, Palythoa tuberculosa, was found to be the result of necrosis, while in Lobophytum sp. discoloration was the result of zooxanthellar depletion (bleaching). Soft corals with discoloration or tissue loss showed a marked inflammatory response, however no obvious causative organisms were seen. Lesions that appeared similar at the gross level were revealed to be distinct by microscopy, emphasizing the importance of histopathology.     

Cyphastrea kausti sp. n. (Cnidaria,Anthozoa, Scleractinia), a new species of reef coral from the Red Sea

A new scleractinian coral species, Cyphastrea kausti sp. n., is described from 13 specimens from the Red Sea. It is characterised by the presence of eight primary septa, unlike the other species of the genus, which have six, ten or 12 primary septa. The new species has morphological affinities with Cyphastrea microphthalma, from which it can be distinguished by the lower number of septa (on average eight instead of ten), and smaller calices and corallites. This species was observed in the northern and central Red Sea and appears to be absent from the southern Red Sea.     

Two distinct, geographically overlapping lineages of the corallimorpharian Ricordea florida (Cnidaria: Hexacorallia: Ricordeidae)

We examined the genetic variation of the corallimorpharian Ricordea florida; it is distributed throughout the Caribbean region and is heavily harvested for the marine aquarium trade. Eighty-four distinct individuals of R. florida were sequenced from four geographically distant Caribbean locations (Cura?ao, Florida, Guadeloupe, and Puerto Rico). Analysis of the ribosomal nuclear region (ITS1, 5.8S, ITS2) uncovered two geographically partially overlapping genetic lineages in R. florida, probably representing two cryptic species. Lineage 1 was found in Florida and Puerto Rico, and Lineage 2 was found in Florida, Puerto Rico, Guadeloupe, and Cura?ao. Because of the multi-allelic nature of the ITS region, four individuals from Lineage 1 and six from Lineage 2 were cloned to evaluate the levels of hidden intra-individual variability. Pairwise genetic comparisons indicated that the levels of intra-individual and intra-lineage variability (<1%) were approximately an order of magnitude lower than the divergence (~9%) observed between the two lineages. The fishery regulations of the aquarium trade regard R. florida as one species. More refined regulations should take into account the presence of two genetic lineages, and they should be managed separately in order to preserve the long-term evolutionary potential of this corallimorpharian. The discovery of two distinct lineages in R. florida illustrates the importance of evaluating genetic variability in harvested species prior to the implementation of management policies.     

The complete mitochondrial genome of the black coral Chrysopathes formosa (Cnidaria:Anthozoa:Antipatharia) supports classification of antipatharians within the subclass Hexacorallia

Black corals comprise a globally distributed shallow- and deep-water taxon whose phylogenetic position within the Anthozoa has been debated. We sequenced the complete mitochondrial genome of the antipatharian Chrysopathes formosa to further evaluate its phylogenetic relationships. The circular mitochondrial genome (18,398 bp) consists of 13 energy pathway protein-coding genes and two ribosomal RNAs, but only two transfer RNA genes (trnM and trnW), as well as a group I intron within the nad5 gene that contains the only copies of nad1 and nad3. No novel genes were found in the antipatharian mitochondrial genome. Gene order and genome content are most similar to those of the sea anemone Metridium senile (subclass Hexacorallia), with differences being the relative location of three contiguous genes (cox2-nad4-nad6) and absence (from the antipatharian) of a group I intron within the cox1 gene. Phylogenetic analyses of multiple protein-coding genes support classifying the Antipatharia within the subclass Hexacorallia and not the subclass Ceriantipatharia; however, the sister-taxon relationships of black corals within Hexacorallia remain inconclusive.     

Diversity and evolution in the zoanthid genus Palythoa (Cnidaria: Hexacorallia) based on nuclear ITS-rDNA

Previous phylogenetic studies based on mitochondrial DNA markers have suggested that the zoanthid genus Palythoa may consist of both Palythoa species (Palythoa tuberculosa) and species formerly assigned to the genus Protopalythoa (Palythoa mutuki, Palythoa heliodiscus). In the present study various Palythoa spp. samples collected primarily from southern Japan with additional samples from the Indo-Pacific and Caribbean Sea were examined. The nuclear internal transcribed spacer of ribosomal DNA (ITS-rDNA) was sequenced and aligned for phylogenetic analyses to further investigate the relationship between P. tuberculosa, P. mutuki, and P. heliodiscus. ITS-rDNA analyses showed species groups forming monophylies with similar topology but with much higher resolution than seen for mitochondrial phylogenetic analyses. The results also confirmed the very close relationship of P. tuberculosa and P. mutuki. Some specimens appeared to be a potentially undescribed Palythoa species (designated Palythoa sp. sakurajimensis). Additionally, ITS-rDNA sequences of P. mutuki and P. tuberculosa showed additive polymorphic site, demonstrating for the first time a potential history of reticulate evolution in Palythoa.     

Four new species of dwarfgobies (Teleostei: Gobiidae: Eviota) from the Austral,Gambier, Marquesas and Society Archipelagos,French Polynesia

Four new species of Eviota (Teleostei: Gobiidae) are described from French Polynesia. Eviota hinanoae occurs from the Gambier, Austral and Society Archipelagos and differs from its closest relatives primarily in sensory pore pattern, having cuplike male urogenital papilla, and in lacking prominent dark pigmentation on the base of the pectoral fin. Three other new species, E. dorsimaculata, E. lacrimosa and E. deminuta, are known only from the Marquesas Islands and are distinguished from congeners by differences in pigmentation, sensory pore pattern, urogenital papilla shape, the number of rays in the dorsal and anal fins, and the length of the fifth pelvic-fin ray. Eviota deminuta represents one of the smallest known species of Eviota and features reductions in several morphological characters, including the loss of all head pores. Three of the new species are included in a phylogenetic analysis based on mitochondrial cytochrome c oxidase-I, along with 21 additional species of Eviota.     

A preliminary market-based analysis of the Pohnpei,Micronesia, grouper (Serranidae: Epinephelinae) fishery reveals unsustainable fishing practices

Serranids are important components of artisanal and commercial catch worldwide, but are highly susceptible to overfishing. In Pohnpei (Micronesia), a recent coral reef fish market survey revealed a reliance on night-time spearfishing and a serranid catch composed primarily of juveniles and small adults of practically all epinepheline species. Fishing effort was concentrated in one of five municipalities and was disproportionate to the population distribution. Lagoon areas were fished preferentially to outer reef areas, with both catch size distribution and species composition similar between the two areas. Some species were unique to a particular gear type, but catch composition did not vary substantially between spear and line fishing. Existing seasonal sales bans, meant to protect reproductively active serranids, appeared to place additional pressure on other families during ban periods. The study identified the need for a comprehensive management plan that merges traditional measures, including size limits and gear restrictions, with precautionary management tools. Specifically, the scale and scope of marine protected areas should be increased to protect juveniles and other life history stages over wider areas than currently employed.     

三亚珊瑚礁分布海区浮游生物的群落结构

为了更好地了解珊瑚礁区生物群落应对环境变化的生态响应机制,以及浮游生物群落结构与珊瑚礁发展发育的关系,我们于2006年10月26日至11月10日对三亚珊瑚礁保护区9个有珊瑚礁分布的站点进行了浮游生物群落结构的调查.共鉴定出浮游植物种类61属130种(包括变种、变型),其中硅藻门48属101种,甲藻门10属25种,蓝藻门2属3种,金藻门1属1种.硅藻门的角毛藻属(Chaetoceros)种类最多,根管藻属(Rhizosolenia)的种类次之.调查海区浮游植物的细胞丰度范围为348-11,320个/L,平均为3,247个/L.在浮游植物群落中硅藻占绝对优势,平均丰度为3,230个/L,占总密度的99.5％.调查海区共鉴定出浮游动物76种,其中桡足类29种,水母类17种,浮游幼虫10种,毛颚类7种,被囊类6种,浮游腹足类4种,十足类、多毛类和介形类各1种.调查海区浮游动物的密度范围为43-190个/m3,平均为114个/m3.优势类群为桡足类、各类幼虫和毛颚类,平均分别占浮游动物总密度的28.5％,27.7％和13.6％.各站位浮游植物的多样性指数和均匀度平均分别为3.98和0.70,浮游动物的多样性指数和均匀度平均分别为4.37和0.87.鹿回头和大东海海域的浮游植物密度大,而生物多样性指数低.活的造礁石珊瑚种数和覆盖率高的站点的浮游生物多样性也较高.     

Chemistry and structure of skeletal growth rings in the black coral Antipathes fiordensis (Cnidaria,Antipatharia)

The skeleton of the black coral Antipathes fiordensis is a laminar structure displaying major and minor growth rings. The skeleton is composed primarily of protein and chitin organized into successive microlayers. Each microlayer is tightly bound to the next by an organic cement that is periodically opaque in section, and occurs as clusters throughout the skeleton. In contrast, the skeletal microlayers themselves are never opaque. The apposition of multiple, opaque cement lines between skeletal layers is primarily responsible for the growth ring pattern.     

A review of the fossil record of the Pomacentridae (Teleostei: Labroidei) with a description of a new genus and species from the Eocene of Monte Bolca, Italy

The fossil record of the Pomacentridae has been based on species from six genera. The status of these taxa is reviewed. Only two are tentatively accepted as belonging to the Pomacentridae: Chromis savomini from the Miocene of Algeria and Izuus nakamurai from the Miocene of Japan. In addition, a new genus and species Palaeopomacentrus orphae is described from the lower Middle Eocene of Monte Bolca, Northern Italy. This is the first substantiated record of a pomacentrid from the Eocene, and represents the oldest record of the family.     

Karyotypic mosaicism and molecular cytogenetic markers in the scleractinian coral Acropora pruinosa Brook, 1982 (Hexacorallia,Anthozoa, Cnidaria)

Coral Reefs - Molecular cytogenetic investigation was carried out on the scleractinian coral, Acropora pruinosa (A. pruinosa). Conventional Giemsa staining techniques for karyotyping, such as G-...     

Sperm ultrastructure of a member of the black coral family Aphanipathidae: Rhipidipathes reticulata (Anthozoa, Antipatharia)

Fertile male polyps of three colonies of the black coral Rhipidipathes reticulata (Aphanipathidae) from Togian Islands (Indonesia) have been the source of the sperm investigated at ultrastructural level, in order to compare their organization with that of other members belonging to the family Antipathidae and Myriopathidae. The extension of the studies to a representative of the family Aphanipathidae stresses once more the structural similarity of the male gametes in antipatharians. A sketch of the sperm model reports the similarity and differences in the examined taxa. Among the micro-characters, the cup-like body linked to the pericentriolar apparatus, is exclusive of the antipatharians. Other inclusions concern the more common pro-acrosomal vesicles or the acrosomelike structure observed only in Antipathella subpinnata and Myriopathes japonica. Lipid vesicles are occasionally present. A typical inclusion, the electron-dense content of which has a C-shaped configuration, is restricted to Rhipidipathes reticulata and is associated to the cup-like body or to the mitochondrion.     

Habitat and zonation patterns of Littoraria species (Gastropoda: Littorinidae) in Indo-Pacific mangrove forests

The zonation of 15 species of Littoraria in the scabra group is described, using a transect method, at 13 mangrove localities in Australia, Thailand, Malaysia and Hawaii. At these localities the littorinids occurred only on trees, and showed both vertical and horizontal patterns of zonation, with broad overlaps between co-occurring species. It is suggested that vertical distribution is determined mainly by behavioural responses, while the landward limits of horizontal distribution may be set by physiological tolerance. Several species occurred predominantly on either leaf or bark substrates, but no consistent associations with tree species were found. On the basis of local distribution patterns, Littoraria species can be classified as continental or oceanic in character. Oceanic species may be less tolerant of sediment in the water or on the substrate.