Does soil acidity reduce subsoil rooting in Norway spruce (Picea abies)?

Increasing evidence suggests that forest soils in central and northern Europe as well as in North America have been significantly acidified by acid deposition during the last decades. The present investigation was undertaken to examine the effect of soil acidity on rooting patterns of 40-year-old Norway spruce trees by comparing fine and coarse roots among four stands which differed in soil acidity and Mg (and Ca) nutrition. The coarse root systems of four to five 40-year-old Norway spruce trees per stand were manually excavated. The sum of cross sectional area (CSA) at 60 cm soil depth and below of all vertical coarse roots, as a measure of vertical rooting intensity, was strongly reduced with increasing subsoil acidity of the stands. This pattern was confirmed when 5 additional acidic sites were included in the analysis. Fine root biomass in the mineral soil estimated by repeated soil coring was strongly reduced in the heavily acidified stands, but increased in the humic layer. Using ingrowth cores and a screen technique, we showed that the higher root biomass in the humic layer of the more acidic stands was a result of higher root production. Thus, reduced fine root biomass and coarse root CSA in deeper soil layers coincided with increased root growth in the humic layer. Root mineral analysis showed Ca/Al ratios decreased with decreasing base saturation in the deeper mineral soil (20–40 cm). In the top mineral soil, only minor differences were observed among stands. In general, low Ca/Al ratios coincided with low fine root biomass. Calcium/aluminum ratios determined in cortical cell walls using X-ray microanalysis showed a similar pattern as Ca/Al ratios based on analysis of whole fine roots, although the amplitude of changes among the stands was much greater. Aluminum concentrations and Ca/Al ratios in cortical cell walls were at levels found to inhibit root growth of spruce seedlings in laboratory experiments. The data support the idea that Al (or Ca/Al ratios) and acid deposition-induced Mg (and possibly Ca) deficiency are important factors influencing root growth and distribution in acidic forest soils. Changes in carbon partitioning within the root system may contribute to a reduction in deep root growth.     

Divergent growth of Norway spruce on Babia Góra Mountain in the western Carpathians

Growth divergence – i.e. the expression of divergent growth trends of neighboring trees – has certain implications for dendrochronological research, for instance in the context of climate reconstructions but also in terms of estimating net ecosystem productivity. Thus, understanding the underlying mechanisms is essential to extend our fundamental dendroecological knowledge. In this context, the Picea genus plays an important role since several of its species were reported to exhibit growth divergence. Here, we investigate a well sampled Norway spruce (Picea abies (L.) Karst) data set for growth divergence comprising ring-width and Blue Intensity measurements from seven sites on Babia Góra Mountain, at the border between Poland and Slovakia. By means of Principal Component Gradient Analysis, inter-series correlations, and climate growth relationships, we are able to show that I) Norway spruce on Babia Góra expressed growth divergence since the 1970s, II) the definition of groups increased the strength of population signals and the stability of climate-growth relationships, and III) Blue Intensity appeared as a more robust proxy for environmental conditions. We discuss soil heterogeneity, genetics, and air pollution as possible underlying mechanisms, thereby indicating further research avenues to obtain a better understanding of growth divergence.     

Why does needle photosynthesis decline with tree height in Norway spruce?

Needle morphological, chemical and physiological characteristics of Norway spruce were studied in a forest chronosequence in Järvselja Experimental Forest, Estonia. Current‐year shoots were sampled from upper canopy positions in five stands, ranging in height from 1.8 to 33.0 m (corresponding age range was 10–85 years). A/C_i curves were determined to obtain maximum carboxylation rates (V_cmax) and maximum rates of electron transport (J_max). Needle nitrogen (N) partitioning into photosynthetic functions was calculated from the values of V_cmax, J_max and leaf chlorophyll concentration. All needle size parameters (length, width, thickness, volume and cross‐sectional areas of mesophyll and xylem) increased significantly with tree height. The needles of taller trees had lower mass‐based N and chlorophyll concentrations (21% and 43% difference between shortest and tallest stands, respectively), but higher dry mass per area (35%), dry mass per volume (18%), number of cells per mesophyll cross‐section area (40%) and partitioning of N into non‐photosynthetic functions (12%). Light saturated net assimilation rate, V_cmax, J_max and stomatal conductance decreased with tree age (35%, 16%, 12% and 29% difference, respectively). A path analysis model describing tree age‐related reduction of photosynthetic capacity as a result of sink limitation provided the best fit to our data. However, since the path model corresponding to source limitation, where photosynthetic reduction derives from changes in needle structure and chemistry was not rejected, we conclude that the decline in photosynthesis with tree age results from several mechanisms (limited sink strength, stomatal and N limitation) operating simultaneously and sequentially.     

Does timing of boron application affect needle and bud structure in Scots pine and Norway spruce seedlings?

Loss of apical dominance is a well-known boron (B) deficiency symptom in trees. Recent field studies indicate that B deficiency may cause irreversible damage in emerging leader buds leading to bushy growth, and changes in developing needles in mature Norway spruce trees. We experimentally studied if timing of B application affects needles and buds of Scots pine (Pinus sylvestris) and Norway spruce (Picea abies) seedlings with low initial B levels. The treatments were: no B (B0); B supply from the beginning of the simulated summer (B1); starting soon after bud burst (B2) and starting at the occurrence of first needle primordia in new spruce buds (B3). At the end of the experiment, B concentration in B1 was 23 mg kg⁻¹ (pine) or 17 mg kg⁻¹ (spruce) and lower in the later applications. In B0 it was at deficiency limit. In B0, B2 and B3, there were fewer sclerenchyma cells, and cavities occurred in vascular cylinders in pine needles, and in spruce buds there were more tanniferous cells in the primordial shoots compared to B1. Furthermore, in all but B1 there was cell collapse in the bud apex of some spruce seedlings. The experimentally induced changes were the same as earlier reported in B deficient conifers in the field, and indicate, similarly as in the field that adequate B is necessary throughout the growing season for healthy growth, particularly for spruce. The differences between spruce and pines are due, at least partly, to the differences in time frame of needle development and in the differences in development of conducting tissues in the buds.     

Does the removal of snowpack and the consequent changes in soil frost affect the physiology of Norway spruce needles?

Climate change may cause a decrease in snow cover in northern latitudes. This, on the other hand, may result in more severe soil frost even in areas where it is not common at present, and may lead to increased stress on the tree canopy. We studied the effects of snow removal and consequent changes in soil frost and water content on the physiology of Norway spruce (Picea abies [L.] Karst.) needles and implications on root biomass. The study was conducted at a 47-year-old Norway spruce stand in eastern Finland during the two winters of 2005/06 and 2006/07. The treatments in three replicates were: (i) natural snow accumulation and melting (CTRL), (ii) artificial snow removal during the winter (OPEN), and (iii) the same as OPEN, but the ground was insulated in early spring to delay soil thawing (FROST). In spite of the deeper soil frost in the OPEN than in the CTRL treatment, soil warming in spring occurred at the same time, whereas soil warming in the FROST was delayed by 2 and 1.5 months in 2006 and 2007, respectively. The soil water content was affected by snow manipulations, being at a lower level in the OPEN and FROST than CTRL in spring and early summer. The physiological measurements of the needles (e.g. starch, carbon and nitrogen content and apoplastic electrical resistance) showed differences between soil frost treatments. The differences were mostly seen between the CTRL and FROST, but also in the case of the starch content in early spring 2007 between the CTRL and OPEN. The needle responses in the FROST were more evident after the colder winter of 2006. The physiological changes seemed to be related to the soil temperature and water content in the early growing season rather than to the wintertime soil temperature. No difference was found in the fine root (diameter < 2 mm) biomass between the treatments assessed in 2007. In the future, conditions similar to the OPEN treatment may be more common than at present in areas experiencing a thick snow cover. The present experiment took place over the course of two years. It is possible that whenever thin snow cover occurs yearly, the reduced starch content during the early spring may be reflected in the tree growth itself as a result of reduced energy reserves.     

Crystal structure of 6aJL2-R24G light chain variable domain: Does crystal packing explain amyloid fibril formation?

Light chain amyloidosis is one of the most common systemic amyloidosis, characterized by the deposition of immunoglobulin light variable domain as insoluble amyloid fibrils in vital organs, leading to the death of patients. Germline λ6a is closely related with this disease and has been reported that 25% of proteins encoded by this germline have a change at position 24 where an Arg is replaced by a Gly (R24G). This germline variant reduces protein stability and increases the propensity to form amyloid fibrils. In this work, the crystal structure of 6aJL2-R24G has been determined to 2.0 Å resolution by molecular replacement. Crystal belongs to space group I2₁2₁2₁ (PDB ID 5JPJ) and there are two molecules in the asymmetric unit. This 6aJL2-R24G structure as several related in PDB (PDB entries: 5C9K, 2W0K, 5IR3 and 1PW3) presents by crystal packing the formation of an octameric assembly in a helicoidal arrangement, which has been proposed as an important early stage in amyloid fibril aggregation. However, other structures of other protein variants in PDB (PDB entries: 3B5G, 3BDX, 2W0L, 1CD0 and 2CD0) do not make the octameric assembly, regardless their capacity to form fibers in vitro or in vivo. The analysis presented here shows that the ability to form the octameric assembly in a helicoidal arrangement in crystallized light chain immunoglobulin proteins is not required for amyloid fibril formation in vitro. In addition, the fundamental role of partially folded states in the amyloid fibril formation in vitro, is not described in any crystallographic structure published or analyzed here, being those structures, in any case examples of proteins in their native states. Those partially folded states have been recently described by cryo-EM studies, showing the necessity of structural changes in the variants before the amyloid fiber formation process starts.     

Intracellular ice formation in insects: Unresolved after 50 years?

Many insects survive internal ice formation. The general model of freeze tolerance is of extracellular ice formation (EIF) whereby ice formation in the haemocoel leads to osmotic dehydration of the cells, whose contents remain unfrozen. However, survivable intracellular ice formation (IIF) has been reported in fat body and certain other cells of some insects. Although the cellular location of ice has been determined only in vitro, several lines of evidence suggest that IIF occurs in vivo. Both cell-to-cell propagation of intracellular ice and inoculation from the haemocoel may be important, although the route of ice into the cell is unclear. It is unclear why some cells survive IIF and others do not, but it is suggested that the shape, size, and low water content of fat body cells may predispose them towards surviving ice formation. We speculate that IIF may reduce water loss in some freeze tolerant species, but there are too few data to build a strong conceptual model of the advantages of IIF. We suggest that new developments in microscopy and other forms of imaging may allow investigation of the cellular location of ice in freeze tolerant insects in vivo.     

Can telomere shortening explain sigmoidal growth curves?

A general branching process model is proposed to describe the shortening of telomeres in eukaryotic chromosomes. The model is flexible and incorporates many special cases to be found in the literature. In particular, we show how telomere shortening can give rise to sigmoidal growth curves, an idea first expressed by Portugal et al. [A computational model for telomere-dependent cell-replicative aging, BioSystems 91 (2008), pp. 262-267]. We also demonstrate how other types of growth curves arise if telomere shortening is mitigated by other cellular processes. We compare our results with published data sets from the biological literature.     

Can telomere shortening explain sigmoidal growth curves?

A general branching process model is proposed to describe the shortening of telomeres in eukaryotic chromosomes. The model is flexible and incorporates many special cases to be found in the literature. In particular, we show how telomere shortening can give rise to sigmoidal growth curves, an idea first expressed by Portugal et al. [A computational model for telomere-dependent cell-replicative aging, BioSystems 91 (2008), pp. 262–267]. We also demonstrate how other types of growth curves arise if telomere shortening is mitigated by other cellular processes. We compare our results with published data sets from the biological literature.     

Does UV-B influence biomass growth in lichens deficient in sun-screening pigments?

This study aimed to assess biomass growth as a response variable in lichens during short-term laboratory experiments. To do this, we studied the influence of UV-B and temperature on lichen performance including the synthesis of solar radiation screening cortical compounds. The pioneer lichen Xanthoria aureola from exposed sea cliffs and the old forest lichen Lobaria pulmonaria were cultivated for 15 days in the laboratory in a factorial experiments with temperature (12 and 21 °C) and UV-B (0, 0.1, 0.3 and 1.0 W m^?2) as treatments. Prior to the experiment, the cortical pigment parietin was non-destructively extracted from X. aureola, whereas the sampled shade-adapted thalli of L. pulmonaria lacked cortical melanic compounds. Therefore both lichens were deficient in cortical sun-screening compounds when the UV-B exposure started. At 12 °C, the relative growth rate was 7.2 ± 0.6 and 3.0 ± 0.8 mg g^?1 day^?1 in L. pulmonaria and X. aureola, respectively, reduced to 1.8 ± 0.5 and ?2.6 ± 0.9 mg g^?1 day^?1, at 21 °C. These figures showed that lichen growth is a useful response variable in short-term laboratory experiments. Growth was not influenced by UV-B alone in these pigment-deficient transplants, suggesting that UV-B had little adverse effects on either of the lichen bionts. The cortical sun screens (parietin and melanic compounds) were synthesized in the presence of UV-B, and increased statistically significantly with increasing UV-B at both cultivation temperatures. However, in X. aureola the synthesis was highest at the lowest temperature (12 °C). At 12 °C, changes in chlorophylls, F_v/F_m and NPQ during cultivation were consistent with a substantial level of acclimation to the growth chamber conditions for both species, whereas strong reductions in photosynthetic pigments, F_v/F_m and Ф_II at 21 °C indicated serious damage and chlorophyll degradation at high temperature. In conclusion, lichen growth and the synthesis of protective compounds are highly responsive lichen processes in short-term experiments.     

Does skimming flow reduce population growth in horse mussels?

Skimming flow was induced in a field flow-through flume with model and live horse mussels as roughness elements. A growth experiment was conducted in the flume with locally available seawater and natural seston. Horse mussel population growth was compared in turbulent isolated element (control) and skimming flow (treatment) and with regulated natural seston levels, indicated by C = bulk flow seston concentration, C¹ = seston concentration in the benthic boundary layer, near the inhalant, which just meets the maintenance ration of the mussel population. We were able to control the bulk seston within the range: 1.2 to 5 times of C¹ during the growth experiment. No significant difference between control and skimming flow treatments was found in: tissue growth, RNA-DNA ratios, or condition factor. Extrapolating from the experimental results we predict that under minimum growth enhancing seston concentrations at a high horse mussel density (71 m²), skimming flow does not reduce population growth.     

Does seed mass drive the differences in relative growth rate between growth forms?

The idea that herbaceous plants have higher relative growth rates (RGRs) compared with woody plants is fundamental to many of the most influential theories in plant ecology. This difference in growth rate is thought to reflect systematic variation in physiology, allocation and leaf construction. Previous studies documenting this effect have, however, ignored differences in seed mass. As woody species often have larger seeds and RGR is negatively correlated with seed mass, it is entirely possible the lower RGRs observed in woody species is a consequence of having larger seeds rather than different growth strategies. Using a synthesis of the published literature, we explored the relationship between RGR and growth form, accounting for the effects of seed mass and study-specific effects (e.g. duration of study and pot volume), using a mixed-effects model. The model showed that herbaceous species do indeed have higher RGRs than woody species, and that the difference was independent of seed mass, thus at all seed masses, herbaceous species on average grow faster than woody ones.     

Does kin structure explain the occurrence of workers in a lower termite?

Kinship plays a fundamental role in the origin of social life. It is also predicted to affect numerous details within animal societies, yet recent studies revealed equivocal results. We tested the influence of relatedness for the occurrence of workers in the termite Cryptotermes secundus. Here individuals are developmentally flexible to remain workers or to become dispersing sexuals that found new colonies. Furthermore, colony relatedness naturally increases with inbreeding and decreases when neighboring colonies fuse. Similar to recent studies on social Hymenoptera, our experimental change in relatedness gave equivocal results. Reducing relatedness within colonies did not have an effect, but individuals in inbred colonies were less likely to disperse and more likely to remain workers as predicted by kinship arguments. Several explanations for the interpretation of these equivocal results are provided.     

Does collagen microunfolding stimulate fibril formation?

The data on the effect of temperature on the kinetics of collagen fibril formation at physiological pH values and ionic strength in the temperature range 26–39°C have been analyzed. The temperature of 35°C optimal for collagen fibril formation has been defined as the point of inflection for half-maximal turbidity and collagen molecule microunfolding values, which corresponds to the temperature of the first transition on the heat absorption curve. The temperature range (32–35°C) in which collagen microunfolding stimulates fibril formation has been determined.     

Does flood tolerance explain tree species distribution in tropical seasonally flooded habitats?

In the tropics, seasonally flooded forests (SFF) harbor fewer tree species than terra firme (i.e. non-flooded) forests. The low species diversity of tropical flooded forests has been ascribed to the paucity of species with adaptations to tolerate flooding. To test the hypothesis that flooding is the only factor restricting most species from SFF, we compared plant morphological and physiological responses to flooding in 2-month old seedlings of 6 species common to SFF and 12 species common to terra firme forests. Although flooding impaired growth, total biomass, maximum root length and stomatal conductance in most species, responses varied greatly and were species-specific. For example, after 90 days, flooding reduced leaf area growth by 10-50% in all species, except in Tabebuia, a common species from non-flooded habitats. Similarly, flooding had a 5-45% negative effect on total biomass for all species, except in 1 SFF and 1 terra firme species both of which had more biomass under flooding. A principal component analysis, using the above responses to flooding, provided no evidence that SFF and terra firme species differed in their responses to flooding. Flooding also caused reductions in root growth for most species. Rooting depth and root: shoot ratios were significantly less affected by flooding in SFF than in terra firme species. Although flood tolerance is critical for survival in flooded habitats, we hypothesize that responses to post-flooding events such as drought might be equally important in seasonal habitats. Therefore, we suggest that the ability to grow roots under anoxia might be critical in predicting success in inundated habitats that also experience a strong dry season.     

Does mobility explain variation in colonisation and population recovery among stream fishes?

1. Colonisation and population recovery are crucial to species persistence in environmentally variable ecosystems, but are poorly understood processes. After documenting movement rates for several species of stream fish, we predicted that this variable would influence colonisation rates more strongly than local abundance, per cent occupancy, body size and taxonomic family. We also predicted that populations of species with higher movement rates would recover more rapidly than species with lower movement rates and that assemblage structure would change accordingly. 2. To test these predictions, we removed fishes from a headwater and a mainstem creek in southwest Virginia and monitored colonisation over a 2‐year period. Using an information–theoretic approach, we evaluated the relative plausibility of 15 alternative models containing different combinations of our predictor variables. Our best‐supported model contained movement rate and abundance and was 41 times more likely to account for observed patterns in colonisation rates than the next‐best model. Movement rate and abundance were both positively related to colonisation rates and explained 88% of the variation in colonisation rates among species. 3. Population recovery, measured as the per cent of initial abundance restored, was also positively associated with movement rate. One species recovered within 3 months, most recovered within 2 years, but two species still had not recovered after 2 years. Despite high variation in recovery, the removal had only a slight impact on assemblage structure because species that were abundant in pre‐removal samples were also abundant in post‐removal samples. 4. The significance of interspecific variation in colonisation and recovery rates has been underappreciated because of the widely documented recovery of stream fish assemblages following fish kills and small‐scale experimental defaunations. Our results indicate that recovery of the overall assemblage does not imply recovery of each component species. Populations of species that are rare and less mobile will recover more slowly and will be more vulnerable to extinction in systems where chemical spills, hydrological alteration, extreme droughts and other impacts are frequent.     

Does antinerve growth factor affect isolated ileal contractility in rat?

This study investigates the effects of antinerve growth factor (anti-NGF) application on isolated ileal contractility in the rat. For this purpose, rats were divided into four groups. The control animals (n=8) received only intraperitoneal injection of an isotonic NaCl solution (i.p). Anti-NGF was daily administered intraperitoneally at the dose of 1 ng/g level in the first experimental group (n=8), and at doses of 10 ng/g (n=7) and 40 ng/g (n=7) in the second and third experimental groups, respectively. Seven days after the injections rats were sacrificed and ileum segments were isolated. Responses to acetylcholine (ACh) were evaluated by using standard Tyrode, double-calcium Tyrode and calcium-free Tyrode solutions. The average peak amplitude of ACh-induced contractions recorded in standard Tyrode solution was significantly decreased in all three experimental groups as compared to the control group (p 0.05). When double-calcium Tyrode solution was used as the perfusion medium, the responses to ACh were also lower in all anti-NGF applied groups as compared to its control group (p 0.05). Our results showed that the application of anti-NGF reduced the contractile responses of the rat isolated ileum apparently by decreasing the calcium influx from the extracellular medium.     

Does growth under elevated CO2 moderate photoacclimation in rice?

Acclimation of plant photosynthesis to light irradiance (photoacclimation) involves adjustments in levels of pigments and proteins and larger scale changes in leaf morphology. To investigate the impact of rising atmospheric CO₂ on crop physiology, we hypothesize that elevated CO₂ interacts with photoacclimation in rice (Oryza sativa). Rice was grown under high light (HL: 700 µmol m^?2 s^?1), low light (LL: 200 µmol m^?2 s^?1), ambient CO₂ (400 µl l^?1) and elevated CO₂ (1000 µl l^?1). Leaf six was measured throughout. Obscuring meristem tissue during development did not alter leaf thickness indicating that mature leaves are responsible for sensing light during photoacclimation. Elevated CO₂ raised growth chamber photosynthesis and increased tiller formation at both light levels, while it increased leaf length under LL but not under HL. Elevated CO₂ always resulted in increased leaf growth rate and tiller production. Changes in leaf thickness, leaf area, Rubisco content, stem and leaf starch, sucrose and fructose content were all dominated by irradiance and unaffected by CO₂. However, stomata responded differently; they were significantly smaller in LL grown plants compared to HL but this effect was significantly suppressed under elevated CO₂. Stomatal density was lower under LL, but this required elevated CO₂ and the magnitude was adaxial or abaxial surface‐dependent. We conclude that photoacclimation in rice involves a systemic signal. Furthermore, extra carbohydrate produced under elevated CO₂ is utilized in enhancing leaf and tiller growth and does not enhance or inhibit any feature of photoacclimation with the exception of stomatal morphology.     

Effect of soil waterlogging on below‐ground biomass allometric relations in Norway spruce

Abstract

An increasing importance is assigned to the estimation and verification of carbon stocks in forests. Forestry practice has several long‐established and reliable methods for the assessment of above‐ground biomass; however, we still miss accurate predictors of below‐ground biomass. A major windthrow event exposing the coarse root systems of Norway spruce trees allowed us to assess the effects of contrasting soil stone and water content on below‐ground allocation. Increasing stone content decreases the root/shoot ratio, while soil waterlogging leads to an increase in this ratio. We constructed allometric relationships for below‐ground biomass prediction and were able to show that only soil waterlogging significantly impacts model parameters. We showed that diameter at breast height is a reliable predictor of below‐ground biomass and, once site‐specific parameters have been developed, it is possible to accurately estimate below‐ground biomass in Norway spruce.