一种基于聚酰胺-胺型树枝状聚合物富集糖肽的新策略

目的:提出了一种新型的糖肽富集试剂,将不同代数的含高密度N端的聚酰胺-胺(PAMAM)型树枝状聚合物固定到溴化氰活化的琼脂糖凝胶上用于糖肽的高效分离。方法:先用标准糖蛋白对试剂的富集条件进行优化,包括是否使用还原剂、不同酸度的结合溶液、不同洗脱液、不同试剂比例,将优化后的方法用于鼠脑裂解液糖肽的富集。结果与结论:将优化的方法用于鼠脑糖肽的富集,用第6代PAMAM鉴定到的糖肽数目是采用商业化酰肼材料的3倍,该试剂对糖肽富集的高选择性和高重现性为糖蛋白组学研究提供了新的工具。     

凝集素法与酰肼法富集糖肽的方法学比较

蛋白质糖基化(glycosylation)是最常见和最重要的翻译后修饰之一.大规模N-连接糖基化位点鉴定是糖蛋白质组学研究的重要组成部分,而N-连接糖肽富集是高通量N-连接糖基化位点鉴定的关键步骤.凝集素富集法和酰肼化学法是目前被广泛应用的N-连接糖肽富集技术,有报道认为两种方法具有很强的互补性,联合使用能提高糖基化位点的鉴定数目.本文以Hep G2细胞系为模型,系统比较了这两种方法的富集效率和糖蛋白鉴定数目.结果表明,虽然酰肼法的糖肽富集效率为76.6%,远高于凝集素法的54.6%,但是凝集素法却能鉴定到825个糖蛋白和1 959个N-连接糖基化位点,显著多于酰肼法富集到的522个糖蛋白和1 014个糖基化位点.并且,两种方法并未显示出显著的互补性,仅28个糖蛋白和80个糖基化位点未在凝集素法中鉴定到.     

戊二醛交联法制备固定化酶的改进研究

本文对以交联聚丙烯酰胺为载体的戊二醛交联法制备固定化酶进行了两点改进t (1)将戊二醛进行醛基保护,避免发生交联反应; (2)将载体的酰胺基经酰肼化反应,使其转化成较活泼的酰肼基。然后将含有活泼酰肼基的载体用保护了醛基的戌二醛进行载体,活化反应,再偶联脲酶、L－门冬酰胺酶,可缩短反应时间、提高偶联酶量及酶活性。     

拟南芥TAG1基因对脂类合成调控作用的研究进展

三酰甘油（TAG）是真核生物中能量贮存的最主要形式。植物中贮存的三酰甘油是食用油类和工业用油的主要来源。TAG1基因的表达产物甘油二酯酰基转移酶（DGAT）能够调控三酰甘油的合成。as11是TAG1基因突变获得的脂类代谢相关突变体。该文概述了拟南芥（Arabidopsis thaliana）突变体as11的生物学特征及TAG1基因对脂类合成调控的最新进展。     

核糖核酸一级结构微量分析方法的研究——Ⅳ.寡核糖核苷酸3′-端的显色标记微量测定法

本文报告用甲基橙为原料合成了甲基橙的两种衍生物:4-二甲氨基偶氮苯-4'-磺酰-甘氨酰肼(DABS-Gly-NHNH_2,Ⅰ)和4-二甲氨基偶氮苯-4'-磺酰肼(DABS-NHNH_2,Ⅱ),并用(Ⅰ)成功地标记了高碘酸氧化的核苷二醛。标记产物在聚酰胺薄板上分离得很好,其灵敏度达到10~(-9)～10~(-10)克分子,比紫外吸收法灵敏数十倍。我们用试剂(Ⅰ)标记测定了四种不同的寡核糖核苷酸的3'-端,用量为0.08～0.12A_(260)。     

斜纹夜蛾蜕皮激素受体与超气门蛋白的原核表达及活性检测

双酰基肼类杀虫剂模拟天然蜕皮激素作用影响幼虫蜕皮。昆虫蜕皮激素受体的高度敏感性和专一性要求必须建立新的杀虫活性检测技术, 以适应快速准确和大批量筛选的要求。本研究采用RT-PCR技术, 获取斜纹夜蛾Spodoptera litura蜕皮激素受体（EcR）与超气门蛋白（USP）功能域目的基因, 构建EcR、 USP功能区基因原核表达载体（pEHISEGFPTEV-EcR_cde和pEHISEGFPTEV-USP_cde）。载体经诱导表达和蛋白纯化, 获得EcR和USP功能区纯化蛋白。在蛋白浓度l mg/mL, ³H-PonA终浓度8 nmol/L的条件下, 采用放射性配基受体结合分析测定了4种药剂（虫酰肼、 呋喃虫酰肼、 抑食肼和灭幼脲）不同浓度下的放射性比活的变化。结果显示： 随着药剂浓度的逐渐增大, 前3种药剂的放射性比活都有不同程度的降低, 其中虫酰肼的放射性比活降低程度最大, 其次是呋喃虫酰肼和抑食肼, 灭幼脲的放射性比活基本无变化。这些结果表明相同条件下虫酰肼比呋喃虫酰肼和抑食肼有更高的杀虫活力, 本研究的方法可对双酰基肼类杀虫剂或者先导化合物进行初步筛选。     

胆固醇对金属离子磷脂酰甘油单分子膜成膜的影响

目的：本文主要研究不同条件胆固醇（Cholesterol,简称Chol）和金属离子（钾、镁离子）对磷脂酰甘油（Phosphatidylglycerols,简称PG）相互作用后形成的单分子膜的影响。方法：首先以金属离子作为亚相,研究胆固醇的量对磷脂酰甘油单分子膜的影响;其次加入同等量的胆固醇量,亚相为不同金属离子时,对磷脂酰甘油单分子膜的影响,最后分析磷脂酰甘油LB膜的π-A曲线,即曲线外扩、相变点、膜压等等变化特征。结果：随着胆固醇的增多,金属离子磷脂酰甘油单分子膜形成π-A曲线变化逐渐明显;当加入同等量的胆固醇时,随着金属离子价态的逐渐增高,磷脂酰甘油单分子膜形成的π-A曲线的变化也逐渐明显。结论：其一：胆固醇对金属离子磷脂酰甘油单分子膜成膜质量是有影响的。其二,金属离子对胆固醇与磷脂酰甘油混合形成的单分子膜同样也是有的影响。     

聚乙二醇修饰重组人干扰素α-2b的碘染色法

目的：建立检测聚乙二醇位点特异性修饰重组人干扰素α-2b反应的方法。方法：采用分子量20000的甲氧基聚乙二醇马来酰亚胺修饰重组人干扰素α-2b,反应混合物样品经十二烷基硫酸钠聚丙烯酰胺凝胶电泳（SDS-PAGE）后,碘染色法判断反应产物组成。结果：该修饰反应产物除含有单PEG化的干扰素α-2b外,还有不同修饰程度的多PEG化干扰素。结论：本方法方便快捷、分辨率高、特异性强,同时可用于其它聚乙二醇修饰蛋白质的分析研究。     

虫酰肼对甜菜夜蛾多巴脱羧酶和酪氨酸羟化酶的抑制作用

虫酰肼模拟昆虫蜕皮激素的作用干扰新表皮的形成。为了探讨虫酰肼对昆虫新表皮形成的影响是否与抑制表皮形成相关酶的活性有关, 本研究应用高效液相色谱-荧光检测法（HPLC-RP）, 测定了甜菜夜蛾Spodoptera exigua 5龄幼虫用虫酰肼处理不同时间（24, 48和72 h）后多巴脱羧酶和酪氨酸羟化酶的活性。结果表明： 用LC₁₁ （28.41 μmol/L）和LC₃₃ （85.23 μmol/L）两个亚致死剂量的虫酰肼处理5龄幼虫后, 多巴脱羧酶和酪氨酸羟化酶的活性均受到明显抑制, 高浓度的抑制作用大于低浓度的抑制作用。随着处理时间的延长, 同一剂量的抑制作用逐渐增强。进一步测定虫酰肼处理24, 48和72 h后5龄幼虫血淋巴、 脂肪体、 中肠、 表皮和头部的多巴脱羧酶和酪氨酸羟化酶的活性, 可看出虫酰肼对幼虫不同组织的多巴脱羧酶和酪氨酸羟化酶的活性也具有相似的抑制作用。结果提示, 虫酰肼对甜菜夜蛾幼虫多巴脱羧酶和酪氨酸羟化酶活性具有明显抑制作用, 幼虫新表皮形成受阻可能与虫酰肼抑制多巴脱羧酶和酪氨酸羟化酶的活性有关。     

凝胶上测定糖蛋白的荧光标记法

凝胶上测定糖蛋白及含糖酶是研究它们的性质和纯度的一种有效的方法。文献中报告的方法,有的不够灵敏,有的则非常麻烦。我们约在20年以前合成了一种荧光酰肼:dansyl glycyl hydrazide(DNS-Gly-NHNH_2),用以     

Rapid and simple single nanogram detection of glycoproteins in polyacrylamide gels and on electroblots

The fluorescent hydrazide, Pro-Q Emerald 300 dye, may be conjugated to glycoproteins by a periodic acid Schiff's (PAS) mechanism. The glycols present in glycoproteins are initially oxidized to aldehydes using periodic acid. The dye then reacts with the aldehydes to generate a highly fluorescent conjugate. Reduction with sodium metabisulfite or sodium borohydride is not required to stabilize the conjugate. Though glycoprotein detection may be performed on transfer membranes, direct detection in gels avoids electroblotting and glycoproteins may be visualized within 2-4 h of electrophoresis. This is substantially more rapid than PAS labeling with digoxigenin hydrazide followed by detection with an antidigoxigenin antibody conjugate of alkaline phosphatase, or PAS labeling with biotin hydrazide followed by detection with horseradish peroxidase or alkaline phosphatase conjugates of streptavidin, which require more than eight hours to complete. Pro-Q Emerald 300 dye-labeled gels and blots may be poststained with SYPRO Ruby dye, allowing sequential two-color detection of glycosylated and nonglycosylated proteins. Both fluorophores are excited with mid-range UV illumination. Pro-Q Emerald 300 dye maximally emits at 530 nm (green) while SYPRO Ruby dye maximally emits at 610 nm (red). As little as 300 pg of alpha 1-acid glycoprotein (40% carbohydrate) and 1 ng of glucose oxidase (12% carbohydrate) or avidin (7% carbohydrate) are detectable in gels after staining with Pro-Q Emerald 300 dye. Besides glycoproteins, as little as 2-4 ng of lipopolysaccharide is detectable in gels using Pro-Q Emerald 300 dye while 250-1000 ng is required for detection with conventional silver staining. Detection of glycoproteins may be achieved in sodium dodecyl sulfate-polyacrylamide gels, two-dimensional gels and on polyvinylidene difluoride membranes.     

Analysis of reducing sugars as their chromophoric hydrazones by high-performance liquid chromatography

A chromophoric hydrazide, 4'-N,N-dimethylamino-4-azobenzene sulfonyl hydrazide (DABS-hydrazide), was prepared from 4'-N,N-dimethylamino-4-azobenzene sulfonyl chloride by reaction with hydrazine. Reducing sugars were derivatized with DABS-hydrazide at 50 degrees C for 120 min. The chromophoric hydrazones were separated by reversed-phase HPLC isocratically using a short column (4.6 X 50 mm) and 0.08 M acetic acid-acetone as an eluant with no sample pretreatment and were quantitated at the picomole level. This method was applied to the sugar analysis of 5 micrograms of glycoproteins. Dansyl hydrazide derivatives of sugars were also separated by this HPLC system.     

Grafting of triggering site onto lymphocytes; distribution of grafted dinitrophenyl groups on cell surface glycoproteins and glycolipids

Quantitative investigation of membrane-bound sialoglycoconjugates on lymphocyte surface was performed by chemical modification of the sialic acid residues with radioactive N4-dinitrophenyl-L-2,4-diaminobutyric acid hydrazide (DNP-DABH). This labeled both glycoproteins and glycolipids with concomitant preservation of the mitogenic activity by multivalent hapten binding protein (anti-DNP antibody). Under conditions where maximum stimulation of thymocytes occurred radioactive DNP-DABH labeled 1.1 X 10(7) glycolipids molecules/cell but, only 3 X 10(6) glycoproteins molecules/cell. When B lymphocytes, which do not undergo DNP-mediated stimulation were used, glycolipids labeling could not be detected. Major differences between stimulation committed and non-committed DNP-modified lymphocytes was the amount of ligand attached to the cell surface sialoglycolipids (gangliosides).     

Enzyme-based detection of glycoproteins on blot transfers using avidin-biotin technology

Avidin-biotin technology has been employed for the improved nonradioactive detection of glycoproteins on blots. Periodate oxidation of samples on blots converts the glycoprotein-based carbohydrate residues to the corresponding aldehydes. The latter undergo interaction with preformed complexes consisting of either avidin hydrazide or streptavidin hydrazide combined with biotinylated alkaline phosphatase. The sensitivity of the new assay exceeds the previously described enzyme hydrazide method by a factor of at least 10. The approach can be rendered selective for sialoglycoproteins, and approximately 12 sugar-containing bands could be observed in erythrocyte membrane preparations. Problems of nonspecific binding and high levels of background label were alleviated using a nonglycosylated basic protein (lysozyme) for quenching.     

Identification of N-linked glycoproteins in human saliva by glycoprotein capture and mass spectrometry

Glycoproteins make up a major and important part of the salivary proteome and play a vital role in maintaining the health of the oral cavity. Because changes in the physiological state of a person are reflected as changes in the glycoproteome composition, mapping the salivary glycoproteome will provide insights into various processes in the body. Salivary glycoproteins were identified by the hydrazide coupling and release method. In this approach, glycoproteins were coupled onto a hydrazide resin, the proteins were then digested and formerly N-glycosylated peptides were selectively released with the enzyme PNGase F and analyzed by LC-MS/MS. Employing this method, coupled with in-solution isoelectric focusing separation as an additional means for pre-fractionation, we identified 84 formerly N-glycosylated peptides from 45 unique N-glycoproteins. Of these, 16 glycoproteins have not been reported previously in saliva. In addition, we identified 44 new sites of N-linked glycosylation on the proteins.     

Polyacrylic polyhydrazides as reagents for detection of glycoproteins

Glycoproteins immobilized on membranes can be detected with high selectivity and sensitivity by the four-step procedure described in this work. The glycoproteins are first oxidized by sodium periodate and then polyacrylic polyhydrazides are coupled to the aldehyde groups generated in the sugar part of the glycoproteins. In the third step, a glycoenzyme, such as horseradish peroxidase, is coupled to the remaining hydrazide groups on the polymer through the aldehydes formed in its glycan chains. In the last step, the visualization of glycoproteins is achieved through the reaction product of the bound glycoenzyme. The sensitivity of the glycoprotein detection is most critically dependent on the hydrazide reagent. Thus, dihydrazides were not satisfactory, a trihydrazide was better, and polyhydrazides were the best. Two different polyhydrazides were used. One was based on acrylamide and the other on N-acryloyl-tris(hydroxymethyl)aminomethane. The second one proved to be superior because it gave higher sensitivity with no detectable background staining. We have also investigated the influence of various reaction conditions on staining of glycoproteins having oligomannose and N-acetyllactosamine type glycan chains. Some of them, invertase and fetuin, could be detected with sensitivity similar to that of silver staining in gels and colloidal gold staining on the membranes. The detection of small quantities of Endo H-deglycosylated glycoproteins was possible under standard conditions only if several N-acetylglucosamine residues remained bound to the protein.     

Comparison of N-linked Glycoproteins in Human Whole Saliva, Parotid, Submandibular, and Sublingual Glandular Secretions Identified using Hydrazide Chemistry and Mass Spectrometry

INTRODUCTION: Saliva is a body fluid that holds promise for use as a diagnostic fluid for detecting diseases. Salivary proteins are known to be heavily glycosylated and are known to play functional roles in the oral cavity. We identified N-linked glycoproteins in human whole saliva, as well as the N-glycoproteins in parotid, submandibular, and sublingual glandular fluids. MATERIALS AND METHODS: We employed hydrazide chemistry to affinity enrich for N-linked glycoproteins and glycopeptides. PNGase F releases the N-peptides/proteins from the agarose-hydrazide resin, and liquid chromatography-tandem mass spectrometry was used to identify the salivary N-glycoproteins. RESULTS: A total of 156 formerly N-glycosylated peptides representing 77 unique N-glycoproteins were identified in salivary fluids. The total number of N-glycoproteins identified in the individual fluids was: 62, 34, 44, and 53 in whole saliva, parotid fluid, submandibular fluid, and sublingual fluid, respectively. The majority of the N-glycoproteins were annotated as extracellular proteins (40%), and several of the N-glycoproteins were annotated as membrane proteins (14%). A number of glycoproteins were differentially found in submandibular and sublingual glandular secretions. CONCLUSIONS: Mapping the N-glycoproteome of parotid, submandibular, and sublingual saliva is important for a thorough understanding of biological processes occurring in the oral cavity and to realize the role of saliva in the overall health of human individuals. Moreover, identifying glycoproteins in saliva may also be valuable for future disease biomarker studies.     

Cell surface labeling of erythrocyte glycoproteins by galactose oxidase and Mn++-catalyzed coupling reaction with methionine sulfone hydrazide.

Methionine sulfone hydrazide (MSH) was coupled to 6-aldehydosugars and the reaction was found to be catalytically enhanced by Mn⁺⁺ ion under physiological condition. The reaction was applied to label surface glycoproteins of erythrocytes with [³⁵S]-MSH after treating cells with galactose oxidase. The slab gel electrophoretic pattern of surface glycoproteins in sodium dodecylsulfate-polyacrylamide can be printed on autoradiogram. At least ten glycoproteins of normal human erythrocytes were printed; five (c, d, e, g, and k) were major bands, and of these four (c, d, e, and g) corresponded to “PAS I, II′, II, and III”. Others are hitherto unrecognized. Two intense bands each corresponds to c, and g, and two new bands, d′ and e′, were printed in desialylated fetal erythrocytes; intact fetal erythrocytes did not show significant label.     

Pre‐staining of glycoprotein in SDS‐PAGE by the synthesis of a new hydrazide derivative

In this study, a new hydrazide derivative (UGF202) was synthesized and introduced as a highly sensitive and selective fluorescent probe to pre‐stain glycoproteins in 1D and 2D SDS‐PAGE. As low as 0.5–1 ng glycoproteins (transferrin, α1‐acid glycoprotein, avidin) could be selectively detected, which is comparable to that of Pro‐Q Emerald 300 stain, one of the most sensitive and commonly used glycoprotein staining kit. In addition, the specificity of the newly developed method was confirmed by the study of de‐glycosylation, glycoproteins affinity enrichment and LC‐MS/MS, respectively. According to the results, it is concluded that UGF202 pre‐stain can provide an alternative for the visualization of gel‐separated glycoproteins.     

Comparative Analysis of Techniques to Purify Plasma Membrane Proteins

The aim of this project was to identify the best method for the enrichment of plasma membrane (PM) proteins for proteomics experiments. Following tryptic digestion and extended liquid chromatography-tandem mass spectrometry acquisitions, data were processed using MaxQuant and Gene Ontology (GO) terms used to determine protein subcellular localization. The following techniques were examined for the total number and percentage purity of PM proteins identified: (a) whole cell lysate (total number, 84–112; percentage purity, 9–13%); (b) crude membrane preparation (104–111; 17–20%); (c) biotinylation of surface proteins with N-hydroxysulfosuccinimydyl-S,S-biotin and streptavidin pulldown (78–115; 27–31%); (d) biotinylation of surface glycoproteins with biocytin hydrazide and streptavidin pulldown (41–54; 59–85%); or (e) biotinylation of surface glycoproteins with amino-oxy-biotin (which labels the sialylated fraction of PM glycoproteins) and streptavidin pulldown (120; 65%). A two- to threefold increase in the overall number of proteins identified was achieved by using stop and go extraction tip (StageTip)-based anion exchange (SAX) fractionation. Combining technique (e) with SAX fractionation increased the number of proteins identified to 281 (54%). Analysis of GO terms describing these proteins identified a large subset of proteins integral to the membrane with no subcellular assignment. These are likely to be of PM location and bring the total PM protein identifications to 364 (68%). This study suggests that selective biotinylation of the cell surface using amino-oxy-biotin in combination with SAX fractionation is a useful method for identification of sialylated PM proteins.