Molecular identification of five Indian sciaenids (pisces: perciformes,sciaenidae) using RAPD markers

The randomly amplified polymorphic DNA (RAPD) markers were used to detect interspecific genetic variability and genetic relatedness among five Indian sciaenids namely Otolithes cuvieri, Johnieops sina, Johnieops macrorhynus, Johnieops vogleri and Protonibea diacanthus for the first time. Eight RAPD primers (OPA01, OPA06, OPA07, OPA18, OPP12, OPP14, OPP16 and OPP11) generated 40 species specific diagnostic bands. The highest genetic divergence was detected between J. macrorhynus and P. diacanthus (0.586) where as the lowest one was observed between J. sina and J. vogleri (0.274). Handling editor: C. Strumbauer     

New PCR based markers allowed to identify <Emphasis Type="Italic">Secale</Emphasis> chromatin in wheat-<Emphasis Type="Italic">Secale africanum</Emphasis> introgression lines

The genus of Secale has many agronomically important characters. In order to use the best of this species, markers tracking the rye chromatin incorporated into wheat must be developed. In this study, one rye genome-specific random amplified polymorphic DNA (RAPD) marker was isolated from Secale africanum (R^a genome). Two cloned markers, named OPP13₁₁₆₅ and OPP13₆₆₂, were 1165 bp and 662 bp, respectively. Sequence analysis revealed that OPP13₁₁₆₅ was highly homologous to a part of a new class of transposon-like gene called the Revolver family, and OPP13₆₆₂ was partially similar to LTR gypsy-like retrotransposon. Fluorescence in situ hybridization (FISH) showed only OPP13₁₁₆₅ localized within the whole arms of rye except their terminal regions and no signal was detected on wheat chromosomes, while OPP13₆₆₂ had no hybridization signal detected on wheat and rye genomes. Based on these sequences, two pairs of sequence-characterized amplified region (SCAR) primers were designed, and the resulted SCAR markers were able to target both cultivated and wild Secale species. The FISH patterns and the two SCAR markers should be able to identify and track all wheat-rye translocation lines, especially the S. africanum chromatin.     

Dynamics of diamondback moth oviposition in the presence of a highly preferred non-suitable host

The diamondback moth, Plutella xylostella (L.) (Lepidoptera: Plutellidae), highly prefers to oviposit on yellow rocket, Barbarea vulgaris (R. Br.) (Cruciferae) var. arcuata, despite larvae not being able to survive on it, suggesting it may have potential as a trap crop. In a no‐choice greenhouse experiment, P. xylostella laid 28% more eggs on B. vulgaris than on cabbage. Within the B. vulgaris plant, P. xylostella laid 3.7 times more eggs on younger than older leaves. Furthermore, we demonstrated that in the presence of B. vulgaris volatiles, P. xylostella laid 23% more eggs on cabbage plants than when B. vulgaris volatiles were absent. Because increased oogenesis in the presence of B. vulgaris could complicate the use of this host as a trap crop for P. xylostella, we wanted to examine levels of oogenesis in varying mixtures of cabbage and B. vulgaris. In outdoor screenhouse experiments, P. xylostella laid a decreasing percentage of eggs on cabbage as the percentage of B. vulgaris increased. However, the total number of eggs laid on cabbage did not differ among treatments, suggesting that the presence of B. vulgaris may have stimulated P. xylostella oviposition. In the field, total oviposition in cabbage plots containing B. vulgaris was 6.3 times higher than in cabbage plots without B. vulgaris. However, in plots with B. vulgaris, P. xylostella laid 99% of the eggs on B. vulgaris and oviposition on cabbage plants was 6.2 times lower than in the plots without B. vulgaris. The results of this study are discussed according to P. xylostella egg‐laying behavior and life history as it relates to its interaction with B. vulgaris.     

Host‐mediated induction of α‐amylases by larvae of the Mexican bean weevil Zabrotes subfasciatus (Coleoptera: Chrysomelidae: Bruchinae) is irreversible and observed from the initiation of the feeding period

Larvae of Zabrotes subfasciatus secrete α‐amylases that are insensitive to the α‐amylase inhibitor found in seeds of Phaseolus vulgaris. By analyzing amylase activities during larval development on P. vulgaris, we detected activity of the constitutive amylase and the two inducible amylase isoforms at all stages. When larvae were transferred from the non α‐amylase inhibitor containing seeds of Vigna unguiculata to P. vulgaris, the inducible α‐amylases were expressed at the same level as in control larvae fed on P. vulgaris. Interestingly, when larvae were transferred from seeds of P. vulgaris to those of V. unguiculata, inducible α‐amylases continued to be expressed at a level similar to that found in control larvae fed P. vulgaris continuously. When 10‐day‐old larvae were removed from seeds of V. unguiculata and transferred into capsules containing flour of P. vulgaris cotyledons, and thus maintained until completing 17 days (age when the larvae stopped feeding), we could detect higher activity of the inducible α‐amylases. However, when larvae of the same age were transferred from P. vulgaris into capsules containing flour of V. unguiculata, the inducible α‐amylases remained up‐regulated. These results suggest that the larvae of Z. subfasciatus have the ability to induce insensitive amylases early in their development. A short period of feeding on P. vulgaris cotyledon flour was sufficient to irreversibly induce the inducible α‐amylase isoforms. Incubations of brush border membrane vesicles with the α‐amylase inhibitor 1 from P. vulgaris suggest that the inhibitor is recognized by putative receptors found in the midgut microvillar membranes. © 2010 Wiley Periodicals, Inc.     

Impact of Apoplast Volume on Ionic Relations in Plant Cells

This study was performed to investigate the effect of cholesterol content, surface charge and sterical stabilization on the physico-chemical properties of liposomes prepared from the cancerostatic alkylphospholipid, octadecyl-1,1-dimethyl-piperidino-4-yl-phosphate (D21266), and their relationship to in vitro cytotoxicity. Stable incorporation of OPP into liposomes was found to be highly dependent on the cholesterol content. ³¹P-NMR spectroscopy as well as analysis of the lipid composition of OPP-containing liposome formulations revealed an increase in the amount of non-liposome-associated, micellar OPP as the cholesterol content decreased. The fraction of non-liposome-associated OPP constituted about 10% of total OPP when cholesterol was present in equimolar amounts (45.5/45.5 mol %) and increased to approximately 30% at a twofold excess of OPP over cholesterol (58.8/29.4 mol %). In monolayer incorporation studies it was shown that the existence of an increasing micellar pool of lipids leads to increased lipid transfer into the target monolayer. Liposome formulations containing more OPP than cholesterol were also found to display greater cytotoxicity. However, all liposome formulations were less cytotxic than pure (micellar) OPP. Cytotoxicity was not affected by the incorporation of N-methoxy-polyethyleneglycol₂₀₀₀-phosphoethanolamine, a lipid that is known to reduce liposome uptake into phagocytic cells. The results demonstrate that the increase in cell toxicity correlates with the increase in non-liposome-associated, micellar OPP, which can readily exchange into cellular membranes. Received: 4 October 2000/Revised: 29 March 2001     

Faba Bean Necrotic Yellows Virus Naturally Infects Phaseolus Bean and Cowpea in the Coastal Area of Syria

In an attempt to identify possible summer hosts of the faba bean necrotic yellows virus (FBNYV), a field survey was conducted in the coastal area of Syria. Using a monoclonal antibody to FBNYV in indirect ELISA, FBNYV was detected in a large number of samples from Phaseolus vulgaris L. and in a few samples from Vigna unguiculata (L.) Walp. in which it caused severe symptoms. This is the first report of natural infection of P. vulgaris and V. unguiculata with FBNYV.     

Biochemical studies on plant tissues infected by Phytophthora palmivora (Butl.) Butl.

Lesion formation in tomato and eggplant fruits infected by Phytophthora palmivora could be classified into three phases associated with changes in hydrolytic enzymes in the tissues. Phenolase, arabinofuranosidase and endo-polygalacturonase activities were all higher than in healthy tissue. The enzymic effects seemed to be reflected in a fairly high loss of pectic materials in the infected tissue, especially the water-insoiuble components. There was a significant negative correlation (r = -0·56) between pH of tomato and the endo-polygalacturonase secretion in the infected tissues. Paper chromatographic analysis of host metabolites showed little or no qualitative differences between the sugar contents of healthy and of infected tomato tissues; there were also no qualitative differences in the amino acid and the phenolic contents. Chlorogenic acid was detected in healthy but not in infected eggplant tissues and lesion maturation was associated with its disappearance. Gradual browning of the lesion was probably also associated with changes in cell membrane permeability of infected tissue.     

Curtobacterium flaccumfaciens pv. flaccumfaciens on Soybean in Germany – A Threat for Farming

Plant diseases caused by Curtobacterium flaccumfaciens pv. flaccumfaciens (Cff) are distributed in North and South America as well as in South and East Europe and occur mostly on beans (Phaseolus vulgaris). This is the first report of Cff on soybean in Germany. Cff was detected in complex with Pseudomonas syringae pv. glycinea on field‐grown soybeans that were not treated with pesticides. Cff, the causal agent of bacterial tan spot disease, was identified by 16S rDNA sequencing and by artificial infection and re‐isolation from the host plants soybean (Glycine max) and bush bean (Phaseolus vulgaris).     

Symptomatological and Morphological Study of the Resistance of Wild Beet Species of the Patellares Section to Cercospora beticola Sacc.

The reactions of Beta procumbens C. Sm. and Beta webbiana Moq. were compared to those of Beta vulgaris L. with regard to an infection by Cercospora beticola Sacc. The fleck reaction obsrved in B. webbiana may be interpreted as hypersensitivity based on symptomatological, light microscopical, fluorescent microscopical and electron microscopical data. The B. procumbens clone was found to show resistance characteristics similar to those of B. webbiana and B. vulgaris, as it reacted both by flecks (B. webbiana) and leaf spots (B. vulgaris) to a C. beticola infection.     

Agrobacterium-mediated transformation of Phaseolus acutifolius A. Gray

Agrobacterium-mediated transformation of Phaseolus acutifolius A. Gray has been achieved. Regeneration-competent callus, obtained from bud explants of greenhouse-grown plants, was co-cultivated with Agrobacterium tumefaciens C58C1Rif^R(pMP90) harbouring a binary vector with the neomycin phosphotransferase II (nptII) and β-glucuronidase (uidA) marker genes. Transient expression of uidA was detected in five out of six genotypes tested. Transgenic callus lines of three genotypes were established on geneticin-containing medium. Plants were recovered from one line (genotype NI 576). This line had been transformed with a binary plasmid which, in addition to the marker genes, contained a genomic fragment encoding the Phaseolus vulgaris arcelin-5a protein. This seed storage protein presumably confers resistance to the insect Zabrotes subfasciatus, a major pest of P. vulgaris. Integration of foreign DNA was confirmed by molecular analysis. The introduced genes segregated as a single locus. Arcelin-5a was produced at high levels in seeds. The possibility of using P. acutifolius as a `bridging' species to introduce transgenes into the economically more important species P. vulgaris is discussed. Received: 20 July 1996 / Accepted: 23 August 1996     

Genomes of the wild beets Beta patula and Beta vulgaris ssp. maritima

We present draft genome assemblies of Beta patula, a critically endangered wild beet endemic to the Madeira archipelago, and of the closely related Beta vulgaris ssp. maritima (sea beet). Evidence‐based reference gene sets for B. patula and sea beet were generated, consisting of 25 127 and 27 662 genes, respectively. The genomes and gene sets of the two wild beets were compared with their cultivated sister taxon B. vulgaris ssp. vulgaris (sugar beet). Large syntenic regions were identified, and a display tool for automatic genome‐wide synteny image generation was developed. Phylogenetic analysis based on 9861 genes showing 1:1:1 orthology supported the close relationship of B. patula to sea beet and sugar beet. A comparative analysis of the Rz2 locus, responsible for rhizomania resistance, suggested that the sequenced B. patula accession was rhizomania susceptible. Reference karyotypes for the two wild beets were established, and genomic rearrangements were detected. We consider our data as highly valuable and comprehensive resources for wild beet studies, B. patula conservation management, and sugar beet breeding research.     

Variation in the phenology and abundance of flowering by native and exotic plants in subalpine meadows

The timing and abundance of flower production is important to the reproductive success of angiosperms as well as pollinators and floral and seed herbivores. Exotic plants often compete with native plants for space and limiting resources, potentially altering community floral dynamics. We used observations and a biomass-removal experiment to explore the effects of an invasive exotic flowering plant, Linaria vulgaris, on community and individual species flowering phenology and abundance in subalpine meadows in Colorado, USA. Invasion by L. vulgaris was associated with a shift in both the timing and abundance of community flowering. Invaded plant communities exhibited depressed flowering by 67% early in the season relative to uninvaded communities, but invaded sites produced 7.6 times more flowers than uninvaded sites once L. vulgaris began flowering. This increase in flowers at the end of the season was driven primarily by prolific flowering of L. vulgaris. We also found lower richness and evenness of resident flowering species in invaded plots during the period of L. vulgaris flowering. At the species level, a common native species (Potentilla pulcherrima) produced 71% fewer flowers in invaded relative to uninvaded plots, and the species had reduced duration of flowering in invaded relative to uninvaded sites. This result suggests that L. vulgaris does not simply alter the flowering of subordinate species but also the flowering of an individual common species in the plant community. We then used observational data to explore the relationship between L. vulgaris density and resident floral production but found only partial evidence that higher densities of L. vulgaris were associated with stronger effects on resident floral production. Taken together, results suggest that a dominant invasive plant can affect community and individual-species flowering.     

Genetic evidence for the origin of Californian wild beets (genus Beta)

The genus Beta L. is a morphologically and genetically variable group composed of wild, weedy, and domesticated forms that are used for sugar production or as vegetables. In this study, we have evaluated genetic variation in 64 germplasm accessions of wild and domesticated beets and examined the origin of wild beet accessions in California using allozyme analysis. UPGMA analysis showed overall that domesticated and wild beets form genetically coherent groups. Wild beets in California have two different origins, from European Beta vulgaris or from Beta macrocarpa. Population-level patterns of allozyme variation for wild California beets related to B. vulgaris suggest that those populations evolved from naturalized populations of the cultivated B. vulgaris ssp. vulgaris which had hybridized to varying degrees with the sea beets B. vulgaris ssp. maritima. Wild California beets related to B. macrocarpa are essentially genetically identical to European accessions. In addition, we found substantial evidence for hybridization and introgression of B. vulgaris alleles in one B. macrocarpa accession in California. The obligate outcrosser B. vulgaris exhibits more allelic diversity than the self-compatible B. macrocarpa. Beta vulgaris ssp. maritima exhibits more genetic diversity than domesticated B. vulgaris ssp. vulgaris. Received: 2 November 1998 / Accepted: 29 April 1999     

Tyrosinase involved in betalain biosynthesis of higher plants

A tyrosine-hydroxylating enzyme was partially purified from betacyanin-producing callus cultures of Portulaca grandiflora Hook. by using hydroxyapatite chromatography and gel filtration. It was characterized as a tyrosinase (EC 1.14.18.1 and EC 1.10.3.1) by inhibition experiments with copper-chelating agents and detection of concomitant o-diphenol oxidase activity. The tyrosinase catalysed both the formation of L-(3,4-dihydroxyphenyl)-alanine (Dopa) and cyclo-Dopa which are the pivotal precursors in betalain biosynthesis. The hydroxylating activity with a pH optimum of 5.7 was specific for L-tyrosine and exhibited reaction velocities with L-tyrosine and D-tyrosine in a ratio of 1:0.2. Other monophenolic substrates tested were not accepted. The enzyme appeared to be a monomer with an apparent molecular mass of ca. 53 kDa as estimated by gel filtration and SDS-PAGE. Some other betalain-producing plants and cell cultures were screened for tyrosinase activity; however, activities could only be detected in red callus cultures and plants of P. grandiflora as well as in plants, hairy roots and cell cultures of Beta vulgaris L. subsp. vulgaris (Garden Beet Group), showing a clear correlation between enzyme activity and betacyanin content in young B. vulgaris plants. We propose that this tyrosinase is specifically involved in the betalain biosynthesis of higher plants. Received: 14 July 1998 / Accepted: 23 October 1998     

Genetic diversity and similarity in the Barbarea vulgaris complex (Brassicaceae)

Two subspecies of Barbarea vulgaris are taxonomically recognized as ssp. vulgaris and ssp. arcuata. In addition, two types of Barbarea vulgaris ssp. arcuata occurs in Denmark. The G‐type is resistant to an herbivorous flea beetle (Phyllotreta nemorum) whereas the P‐type is susceptible. A previous study suggested that the P‐type evolved by a loss of resistance from a resistant progenitor. We analyzed the genetic relatedness among eight Barbarea taxa: B. vulgaris spp. vulgaris, B. vulgaris ssp. arcuata G‐ and P‐types, hybrids between the types, B. verna, B. intermedia, B. stricta, B. orthoceras and B. australis, using AFLP and SSR markers. A clear distinction between the G‐ and P‐types was revealed. Both were distinct from B. vulgaris ssp. vulgaris, the G‐type less so than the P‐type. Barbarea verna and B. intermedia formed unambiguous clusters, whereas the remaining taxa produced less discrete groupings. Possible evolutionary scenarios for flea‐beetle resistance and susceptibility are discussed, including lineage sorting from a polymorphic ancestral population, and de novo loss of resistance in the P‐type of B. vulgaris ssp. arcuata.     

Ovine progressive pneumonia provirus levels associate with breed and Ovar-DRB1

Previous studies initiated defining the role of host genetics in influencing the outcome of exposure to ovine progressive pneumonia virus. However, specific genes influencing host control of virus replication and disease progression have not been identified. This study, using 383 ewes of the Columbia, Polypay, and Rambouillet breeds, tested the hypothesis that host control of OPPV as measured by provirus levels in the peripheral blood associates with certain breeds and MHC class II Ovis aries (Ovar)-DRB1 expressed alleles. Rambouillet ewes were less likely to have measurable provirus levels as compared to Columbia ewes at ages 5 and 6 (P value < 0.02), and they exhibited lower provirus levels when compared to both Columbia and Polypay ewes of the same ages (P value < 0.05). The presence of DRB1*0403- or DRB1*07012-expressed alleles were significantly associated (P value = 0.019 and 0.0002, respectively) with lower OPP provirus levels but only were only found in 11% of the ewe flock. Analysis of each segregating amino acid in the β1 domain of DR β-chain revealed that amino acids Y31, T32, N37, T51, Q60, or N74 significantly associated (P value range = 0.0003–0.018) with lower OPP provirus levels, whereas amino acids H32, A38, or I67 associated (P value range = 0.013–0.043) with higher OPP provirus levels. These results suggest that Ovar-DRB1 contributes as one host genetic factor that controls OPP provirus levels, but does not fully account for the breed-specific OPP proviral differences.     

Effect of a non‐host plant Phaseolus vulgaris on larval performance and oviposition of the oriental tobacco budworm Helicoverpa assulta (Lepidoptera: Noctuidae)

The oriental tobacco budworm, Helicoverpa assulta, is a specialist herbivore feeding on a few plants of the Solanaceae family including tobacco. Larval performance and adult oviposition of H. assulta were investigated in a non‐host plant, Phaseolus vulgaris (Fabaceae) in comparison with two solanaceous host plants, Nicotiana tabacum and Datura stramonium. Larvae provided with the P. vulgaris leaf died off at day 15, whereas 50% and 40% of larval populations fed on the leaves of N. tabacum and D. stramonium, respectively, survived at day 15. Larval growth upon feeding showed significant difference between the non‐host plant (P. vulgaris) and the host plants (N. tabacum and D. stramonium), but it was not significantly different between the two host plants. In the no‐choice experiment of oviposition, gravid females laid more eggs in N. tabacum and D. stramonium than in P. vulgaris. When the most likely acceptable host plant, N. tabacum, and the non‐host plant, P. vulgaris, were subjected to the choice experiment of oviposition, H. assulta females preferred to lay eggs in N. tabacum, where eggs were continuously laid during the whole experiment period. However, eggs in P. vulgaris were hardly detected throughout the period. This study showed that the non‐host plant, P. vulgaris, had a negative influence on the larval performance and adult oviposition of H. assulta, implying neonate stage is critical for larval survivorship, and ovipositional preference by the female is highly specialized to host plants. Further investigation is required to identify non‐host factors, which could be applied to the development of alternative pest management strategy against H. assulta.     

Use of chloroplast DNA polymorphisms for the phylogenetic study of seven Phaseolus taxa including P. vulgaris and P. coccineus

The genetic variability of seven Phaseolus taxa has been evaluated on the basis of molecular data and the results have used to clarify the phyletic relationships between several taxa of the P. coccineus L. complex. Chloroplast DNA (cpDNA) from 33 populations was digested with six restriction endonucleases, revealing some polymorphisms that made it possible to divide most of the taxa into two main groups: the subspecies of P. coccineus on the one hand, and P. vulgaris L., P. polyanthus Greenman and P. costaricensis (Freytag and Debouck) on the other hand. P. polyanthus is closer to P. vulgaris than the other taxa of the second group and should be considered as a separate species. The position of the wild species P. costaricensis is intermediate between P. coccineus and P. polyanthus. P. glabellus shows sufficient polymorphisms at the cpDNA level to be recognized as a separate species, as previously suggested from total seed-protein electrophoretic studies. These results favour the hypothesis of a common phylogeny for P. vulgaris, P. polyanthus, P. costaricensis and P. coccineus from a single wild ancestor. Although cpDNA is generally known to be uniform at the intraspecific level, some additional polymorphisms were also detected within P. vulgaris, P. polyanthus and P. coccineus. Further studies are required to understand the significance of the latter.     

Purification and Characterization of a Polygalacturonase-Inhibiting Protein from Phaseolus vulgaris L

Homogeneous endo-polygalacturonase (PG) was covalently bound to cyanogen-bromide-activated Sepharose, and the resulting PG-Sepharose conjugate was utilized to purify, by affinity chromatography, a protein from Phaseolus vulgaris hypocotyls that binds to and inhibits PG. Isoelectric focusing of the purified PG-inhibiting protein (PGIP) showed a major protein band that coincided with PG-inhibiting activity. PGIP formed a complex with PG at pH 5.0 and at low salt concentrations. The complex dissociated in 0.5 m Na-acetate and pH values lower than 4.5 or higher than 6.0. Formation of the PG-PGIP complex resulted in complete inhibition of PG activity. PG activity was restored upon dissociation of the complex. The protein exhibited inhibitory activity toward PGs from Colletotrichum lindemuthianum, Fusarium moniliforme and Aspergillus niger. The possible role of PGIP in regulating the activity of fungal PG's and their ability to elicit plant defense reactions are discussed.