蚯蚓对土壤微生物及生物肥力的影响研究进展

蚯蚓被称为“生态系统工程师”,可以通过改善微生境(排粪、作穴、搅动)、提高有机物的表面积、直接取食、携带传播微生物等方式影响土壤微生物结构、组成和功能.蚯蚓活动形成的大孔隙(洞穴)、中、微空隙(排泄物)可以增加土壤孔隙度和通气性,有助于改善微生物微环境,促进其生长和繁殖.蚯蚓还通过取食、粉碎、混合等活动使复杂有机质转变为微生物可利用的形式,增加土壤微生物与有机质的接触面积,促进微生物对有机质的矿化作用,对土壤中碳、氮、磷养分循环等关键过程产生影响,最终促进土壤养分循环和周转速率,提高土壤生物肥力.     

Effect of millipede Parafontaria tonominea Attems (Diplopoda: Xystodesmidae) adults on soil biological activities: A microcosm experiment

Effects of high density adult millipede populations on soil ecosystem properties were investigated using laboratory and field microcosm methods in a deciduous broad-leaved forest in western Japan. The density of Parafontaria tonominea adults was 25.6–72.0 individuals m^–2 on 15 September 1996, then the density declined to 0–5.4 m^–2 on 22 October 1996. Addition of millipedes to the laboratory microcosm enhanced soil respiration and decreased soil microbial biomass. Soil microcosms with and without millipedes (one and two pairs of adults) were set on a forest floor, and soil respiration, dissolved ion concentration in leacheate water were observed for 8 weeks. The millipedes ingested both leaf litter and soil, which increased soil respiration, leaching of Ca²⁺, Mg²⁺, and nitrate from the soil, whereas the soil microbial biomass was not changed at 8 weeks after introduction of the animals. Millipede feeding on soil enhanced microbial activity and nutrient leaching from the forest soil.     

A new method for calculating Risk Tolerance in the assessment of threatened flora

This paper reports on a proposed method for evaluating threat categories for regional flora, based mainly on phytogeographical data. The method involves the creation of current distribution maps, analysis of threat factors and use of the RAMAS Red List software to facilitate rapid and objective classification of taxa in accordance with 2001 IUCN criteria. In order to ensure a more objective approach by the assessor and reduce the range of uncertainty, an index was created for calculating Risk Tolerance (RT) that enabled adjustment of the results obtained and thus supplemented the software used. For trial purposes, the proposed model was applied to Spanish gypsophilous flora currently protected under Spanish regional legislation. When classified using the new model, the taxa in question were placed in very different categories, ranging from least concern (LC) to endangered (EN), indicating the need to redefine both their current legal status and recommended management measures. Use of this method will enable scientists to optimise available information on the geographical distribution of endangered taxa, and help governments both to optimise their financial investment in conservation and to define their priorities. The authors endorse the use of IUCN categories in legal protection texts, and advocate as essential a greater degree of coordination between scientists and governments.     

A potential novel source of information for screening and monitoring the impact of exotic plants on ecosystems

Exotic invasive species often affect the pools and fluxes of carbon, nutrient elements, and energy, but there are few sources of information that permit these effects to be anticipated. Some plant traits, such as growth rates and tissue nutrient content, are known to influence the ecosystem process, but information about these traits is often not available. I propose that plant secondary chemistry may be a useful trait for assessing the likelihood of ecosystem (and community) impacts. Information about such traits is readily available from several sources, rendering it a good candidate for screening and monitoring programs. Plant secondary chemicals affect a variety of ecosystem processes, largely through their direct and indirect impacts on soil microbial community composition and function. They also have well-known effects on human physiology, as evidenced in the numerous plant-derived bioactive compounds used for their medicinal and other physiological effects. There is a large amount of information available about plant secondary chemistry due to its role in herbal medicine, dietary supplements and the emerging field of nutraceuticals. This information includes databases and traditional texts in ethnobotany, plant chemistry, and alternative medicine. I review evidence that secondary compounds are widespread in invasive species and affect soil microbial communities and microbially-mediated ecosystem processes. Invasion ecology may profit from collaborations with a novel group of scientists, including those in ethnobotany, nutraceuticals, plant chemistry and alternative medicine.     

A method for estimating cell volume of amoebae based on measurements of cell length of motile forms: physiological and ecological applications

A novel method of estimating the cell volume of non-testate, free-living amoebae is presented. Measurements of the length (L) of motile forms of some amoebae, obtained by applying some basic rules, can be used to calculate diameter (D) using a relatively simple formula, derived from regression analysis (N=39): D=0.6L. Important physiological and ecological variables, including carbon content and respiratory rate, can then be easily calculated using this estimated cell volume.     

Exploring the effect of chronotype on hippocampal volume and shape: A combined approach

Current evidence suggests that acute depression is associated with reduced total hippocampal volume and regional atrophy. Here, using structural magnetic resonance imaging, we assayed linear effects of chronotype on total hippocampal volume and morphology. Later chronotype was associated with localised atrophy in the subiculum region of the right hippocampus in the absence of changes in total volume. The hippocampus forms a key node in a network of brain regions implicated in emotional regulation and alterations in the structure of this region may underpin, in part, the increased vulnerability for depression in late chronotype individuals.     

A taste of the new ReCiPe for life cycle assessment: consequences of the updated impact assessment method on food product LCAs

The International Journal of Life Cycle Assessment - Recently, an update of the Life Cycle Impact Assessment (LCIA) method ReCiPe was released: ReCiPe 2016. The aim of this study was to analyse the...     

A new method for censusing animal populations: The number of Eciton burchelli army ant colonies on Barro Colorado Island,Panama

Summary A new technique for estimating the size of an animal population is described. This technique is used to provide an up to date estimate of the number of colonies of the army ant Eciton burchelli on Barro Colorado Island, Panama. There have been approximately 50 colonies of this species on Barro Colorado Island for more than thirty years. The relative constancy of this population is contrasted with the great temporal variability of other tropical insect populations.     

A sensitive method for continuous measurement of the carbon dioxide evolution rate of soil samples

Summary A differential infrared CO₂ analyser combined with a 12 channel gas handling system have been used for the measurement of CO₂ evolution rates of soil samples. A constant flow of air over the soil was maintained during the incubation period. Automatic sequential measurement and recording of the increase of the CO₂ content of the flushed air of the 12 channels lasted 24 min with a dwell time of 2 min per channel. This technique has proven to be very useful for accurate and rapid measurement of the biological activities in untreated and treated soil.     

Rapid automated multichannel microspectrofluorometry : A new method for studies on the cell-to-cell transfer of molecules

A new microchemical method is described to study the transfer of molecules between neighboring cells: rapid multichannel microfluorometry. The cell-to-cell transfer rates of metabolites or fluorescent tracers (microinjected by a microelectrophoretic or piezoelectric technique) are followed at pace with the in situ velocities of such processes via multisite topographic monitoring of fluorescence in injected cell and neighbors (continuously before, during and after microinjection). Furthermore, the sensitivity of the method allows the kinetic study of cell-to-cell transfer using metabolites (e.g., glucose-6-P) which are not fluorescent themselves, but which elicit associated changes in the redox state of endogenous fluorochromes, i.e. NAD(P) NAD(P)H transients.Since the cell-to-cell transfer of chemicals is known to proceed in various cells and tissues via intercellular junctions, the above technique was applied to a known coupled system (e.g. Chironomus salivary gland) and an uncoupled system (e.g. L cells). The cell-to-cell transfer of fluorescein was observable kinetically in Chironomus salivary glands, liver, Chang liver and Chang conjunctiva cultures. Equilibration of the dye between injected cell and neighbor was completed within a few hundred msec to a few sec, corresponding to an intercellular half total flux per unit concentration difference (g_f) of ˜2–10 × 10⁴ μm³/min. Such transfer was practically basent or a rare occurrence in L cells. In NCTC 8739 and L cells, the cell-to-cell transfer of glucose-6-P seemed to occur more frequently than that of fluorescein, suggesting the possibility that glucose-6-P (or a catabolite) may move through non-junctional regions of the cell membrane. Thus multichannel microfluorometry makes possible the study of tracer or metabolite transfer, without the need for multiple implantation of electrodes and with more kinetic detail than obtainable by other tracer techniques.     

MSLoc-DT: A new method for predicting the protein subcellular location of multispecies based on decision templates

Revealing the subcellular location of newly discovered protein sequences can bring insight to their function and guide research at the cellular level. The rapidly increasing number of sequences entering the genome databanks has called for the development of automated analysis methods. Currently, most existing methods used to predict protein subcellular locations cover only one, or a very limited number of species. Therefore, it is necessary to develop reliable and effective computational approaches to further improve the performance of protein subcellular prediction and, at the same time, cover more species. The current study reports the development of a novel predictor called MSLoc-DT to predict the protein subcellular locations of human, animal, plant, bacteria, virus, fungi, and archaea by introducing a novel feature extraction approach termed Amino Acid Index Distribution (AAID) and then fusing gene ontology information, sequential evolutionary information, and sequence statistical information through four different modes of pseudo amino acid composition (PseAAC) with a decision template rule. Using the jackknife test, MSLoc-DT can achieve 86.5, 98.3, 90.3, 98.5, 95.9, 98.1, and 99.3% overall accuracy for human, animal, plant, bacteria, virus, fungi, and archaea, respectively, on seven stringent benchmark datasets. Compared with other predictors (e.g., Gpos-PLoc, Gneg-PLoc, Virus-PLoc, Plant-PLoc, Plant-mPLoc, ProLoc-Go, Hum-PLoc, GOASVM) on the gram-positive, gram-negative, virus, plant, eukaryotic, and human datasets, the new MSLoc-DT predictor is much more effective and robust. Although the MSLoc-DT predictor is designed to predict the single location of proteins, our method can be extended to multiple locations of proteins by introducing multilabel machine learning approaches, such as the support vector machine and deep learning, as substitutes for the K-nearest neighbor (KNN) method. As a user-friendly web server, MSLoc-DT is freely accessible at http://bioinfo.ibp.ac.cn/MSLOC_DT/index.html.     

A new approach for the biolistic method: Bombardment of living nitrogen-fixing bacteria into plant tissues

Summary A new utilization of the biolistic gun was developed for the direct introduction of nitrogen-fixing bacteria (Azotobacter vinelandii) into strawberry (Fragaria x ananassa) tissues. This was the first case of using living bacteria as microprojectiles for the bombardment of plant tissues. Bacterial cells, adhered to tungsten particles, were accelerated by a nitrogen-powered device, and delivered into the target leaves and regenerating shoot meristems. The presence of bacteria in the developing strawberry callus tissues and regenerating plants was detected by microscopy, acetylene reduction assay, and selective polymerase chain reaction. Practically, the elaborated method proved to be suitable for the establishment of artificial intereellular, associations between nitrogen-fixing bacteria and higher plants.     

A new method for electrophysiological identification of antennal pH receptor cells in ground beetles: the example of Pterostichus aethiops (Panzer, 1796) (Coleoptera, Carabidae)

The responses of antennal taste sensilla of the ground beetle Pterostichus aethiops to 100mM Na(+)-salts and their mixtures with 1 and 10mM NaOH were compared. An increase in pH by 0.3-0.6 units in 100mM Na(+)-salt solutions, caused by the content of 1mM NaOH, was too small, except for alkaline Na(2)HPO(4), to influence the firing rate of the cation cell and pH cell significantly. However, different sensitivity of the two cells to increased pH was clearly demonstrated when the concentration of NaOH in 100mM stimulating salt solutions was increased to 10mM. Increasing pH by 1.2-2 units caused the 1st s firing rate to increase by 140-1050% and 0-26% in the pH cell and cation cell, respectively. Compared to the buffer series method used for identification of the pH receptors in ground beetles earlier, considerably stronger responses of the pH cell to a similar increase in pH were observed when the NaOH method was used for testing. At the same time, undesirable changes in salt ions concentration that occur when stimulating solutions differing by 1-2 pH units are prepared were much smaller using the latter method. Behavioural and ecological relevance of the results is discussed.     

Methane emission by plant communities in an alpine meadow on the Qinghai-Tibetan Plateau: a new experimental study of alpine meadows and oat pasture

Recently, plant-derived methane (CH₄) emission has been questioned because limited evidence of the chemical mechanism has been identified to account for the process. We conducted an experiment with four treatments (i.e. winter-grazed, natural alpine meadow; naturally restored alpine meadow eight years after cultivation; oat pasture and bare soil without roots) during the growing seasons of 2007 and 2008 to examine the question of CH₄ emission by plant communities in the alpine meadow. Each treatment consumed CH₄ in closed, opaque chambers in the field, but two types of alpine meadow vegetation reduced CH₄ consumption compared with bare soil, whereas oat pasture increased consumption. This result could imply that meadow vegetation produces CH₄. However, measurements of soil temperature and water content showed significant differences between vegetated and bare soil and appeared to explain differences in CH₄ production between treatments. Our study strongly suggests that the apparent CH₄ production by vegetation, when compared with bare soil in some previous studies, might represent differences in soil temperature and water-filled pore space and not the true vegetation sources of CH₄.     

A review of the genus Aleurolobus Quaintance and Baker (Hemiptera: Aleyrodidae) from Taiwan, based mainly on pupal morphology with a description of a new species

The whitefly species of the genus Aleurolobus Quaintance and Baker are reviewed from Taiwan. A total of nine species are included. Aleurolobus shiiae Takahashi is new to Taiwan. Aleurolobus osmanthi Young is considered as a junior synonym of Aleurolobus taonabae (Kuwana). A new species, Aleurolobus rubus Dubey and Ko, is described, and the puparia of the new species are diagnosed in a combination of characters: the dorsal pores scattered over dorsum; each located on a large subcircular, chitinised cuticular dorsal marking; faint eye spots; broader submargin; and the vasiform orifice set anterior to the caudal end of puparium by nearly twice of its own length. The record of Aleurolobus philippinensis Quaintance and Baker, and Aleurolobus setigerus Quaintance and Baker from Taiwan is discussed. The puparial diagnosis of each species, identification key to species so far known from Taiwan and illustrations for each species are provided.     

A new method for non-destructive measurement of biomass, growth rates, vertical biomass distribution and dry matter content based on digital image analysis

BACKGROUND AND AIMS: Biomass is an important trait in functional ecology and growth analysis. The typical methods for measuring biomass are destructive. Thus, they do not allow the development of individual plants to be followed and they require many individuals to be cultivated for repeated measurements. Non-destructive methods do not have these limitations. Here, a non-destructive method based on digital image analysis is presented, addressing not only above-ground fresh biomass (FBM) and oven-dried biomass (DBM), but also vertical biomass distribution as well as dry matter content (DMC) and growth rates. METHODS: Scaled digital images of the plants silhouettes were taken for 582 individuals of 27 grass species (Poaceae). Above-ground biomass and DMC were measured using destructive methods. With image analysis software Zeiss KS 300, the projected area and the proportion of greenish pixels were calculated, and generalized linear models (GLMs) were developed with destructively measured parameters as dependent variables and parameters derived from image analysis as independent variables. A bootstrap analysis was performed to assess the number of individuals required for re-calibration of the models. KEY RESULTS: The results of the developed models showed no systematic errors compared with traditionally measured values and explained most of their variance (R(2) > or = 0.85 for all models). The presented models can be directly applied to herbaceous grasses without further calibration. Applying the models to other growth forms might require a re-calibration which can be based on only 10-20 individuals for FBM or DMC and on 40-50 individuals for DBM. CONCLUSIONS: The methods presented are time and cost effective compared with traditional methods, especially if development or growth rates are to be measured repeatedly. Hence, they offer an alternative way of determining biomass, especially as they are non-destructive and address not only FBM and DBM, but also vertical biomass distribution and DMC.     

A method for evaluating the impact of navigationally induced suspended sediments from the Upper Great Lakes Connecting Channels on the primary productivity

The impact of navigationally induced suspended sediments from the Upper Great Lakes Connecting Channels on the size-fractionated primary productivity was evaluated by the Carbon-14 technique. The method applied was on-site, rapid, sensitive, inexpensive, and provided dynamic-toxicological information essential for hazard assessment. Both enhancement and inhibition of the primary productivity was observed in various parts of the Upper Great Lakes Connecting Channels. These responses appear to depend on the type of natural plankton and their exposure to various contaminant/nutrient complexes generated by the disturbance of the bottom sediments during the passage of ships. Traditionally, only the inhibition of primary productivity has been monitored from a toxicity point of view, but it is important also to evaluate the implications of enhancement since it may result in increased eutrophication, propagation of nuisance blooms, and change of intricate food-web interactions. The procedure adopted in this study for the first time appears to possess considerable potential for a simple and rapid screening of environmental perturbations resulting from navigational activities.