Seasonal dynamics of prokaryotes and their associations with diatoms in the Southern Ocean as revealed by an autonomous sampler

The Southern Ocean remains one of the least explored marine environments. The investigation of temporal microbial dynamics has thus far been hampered by the limited access to this remote ocean. We present here high-resolution seasonal observations of the prokaryotic community composition during phytoplankton blooms induced by natural iron fertilization. A total of 18 seawater samples were collected by a moored remote autonomous sampler over 4 months at 5–11 day intervals in offshore surface waters (central Kerguelen Plateau). Illumina sequencing of the 16S rRNA gene revealed that among the most abundant amplicon sequence variants, SAR92 and Aurantivirga were the first bloom responders, Pseudomonadaceae, Nitrincolaceae and Polaribacter had successive peaks during the spring bloom decline, and Amylibacter increased in relative abundance later in the season. SAR11 and SUP05 were abundant prior to and after the blooms. Using network analysis, we identified two groups of diatoms representative of the spring and summer bloom that had opposite correlation patterns with prokaryotic taxa. Our study provides the first seasonal picture of microbial community dynamics in the open Southern Ocean and thereby offers biological insights to the cycling of carbon and iron, and to an important puzzling issue that is the modest nitrate decrease associated to iron fertilization.     

DISTRIBUTION OF DIATOMS IN THE PLANKTON OF YAQUINA ESTUARY,OREGON1

The distributional patterns of diatoms in the plankton of the Yaqnina Estuary, Oregon, were, investigated and related to selected climatic and hydrographic factors. Distribution was strongly influenced by seasonal patterns of rainfall resulting in the introduction of a large volume of fresh water into the estuary during fall and winter. Plankton assemblages in spring, summer and fall had fewer diatom species and exhibited a more rapid rate of change in species composition than in winter. Winter assemblages were further characterized by many pennate diatoms, apparently dislodged from the benthos during periods of high freshwater discharge and silt loads. A statistical measure of community difference indicated an increase in taxonomic homogeneity among assemblages throughout the estuary with the onset of the rainy season in late fall and a gradual transition to a more heterogeneous system again during late spring. Canonical correlation ordered 20 prominent diatom taxa along the salinity gradient and identified possible relationships among certain taxa and selected environmental variables, namely visible light energy and temperature. Redundancy in the species data given the environmental data was only 40%, emphasizing the difficulty in demonstrating a quantitive relationship between plankton dynamics in the field and concurrent measurements of chemical and physical variables.     

Comparison of contemporary and fossil diatom assemblages from the western Antarctic Peninsula shelf

During the past ten years, the Antarctic Peninsula has been identified as the most rapidly warming region of the Southern Hemisphere and it is important to place this warming in the context of the natural climate and oceanographic variability of the recent geological past. Many biological proxies, such as marine diatom assemblages, have been used to determine Southern Ocean palaeoceanographic conditions during the Late Quaternary, however, few investigations have attempted to link observations of modern floras with the fossil record. In this study we examine a suite of modern austral spring (December 2003) and summer (February 2002) surface water samples from along the western Antarctic Peninsula (WAP) continental shelf and compare these to core-top, surface sediment samples. Using detrended correspondence analysis (DCA) and principal component analysis (PCA) of diatom abundance data we investigate the relationship of contemporary diatom floras with the fossil record. This multivariate analysis reveals that our modern assemblages can be divided into three groups: summer southern WAP sites, summer northern WAP sites, and spring WAP sites. Sea surface temperature (SST) is an important environmental variable for explaining seasonal differences in diatom assemblages between spring and summer, but sea surface salinity (SSS) is more important for understanding temporally-equivalent regional variations in assemblage. Our summer diatom samples are more reminiscent of early season assemblages, reflecting the unusually late sea ice retreat from the region that year. When the modern assemblages are compared to the fossil record, it is clear that most of the important diatoms from the summer assemblage are not preserved into the sediments, and that the fossil record more closely reflects spring assemblages. This observation is important for any future attempts to quantitatively reconstruct palaeoceanographic conditions along the WAP during the Late Quaternary and highlights the need for many more such studies in order to address longer timescales, such as interannual variability, in the context of the fossil record.     

Phytoplankton community composition and photosynthetic physiology in the Australian sector of the Southern Ocean during the austral summer of 2010/2011

Phytoplankton population dynamics play an important role in biogeochemical cycles in the Southern Ocean during austral summer. However, the relationship between phytoplankton community composition and primary productivity remains elusive in this region. We investigated the community composition and photosynthetic physiology of surface phytoplankton assemblages in the Australian sector of the Southern Ocean from December 2010 to January 2011. There were significant latitudinal variations in hydrographic and biological parameters along 110°E and 140°E. Surface (5 m) chlorophyll a (chl a) concentrations measured with high-performance liquid chromatography varied between 0.18 and 0.99 mg m^?3. The diatom contribution to the surface chl a biomass increased in the south, as estimated with algal chemotaxonomic pigment markers, while the contributions of haptophytes and chlorophytes decreased. In our photosynthesis–irradiance (P–E) curve experiment, the maximum photosynthetic rate normalized to chl a ( \(P_{ \hbox{max} }^{*}\) ), initial slope (α ^*), the maximum quantum yield of carbon fixation (Φ _{c max}), and the photoinhibition index (β ^*) were higher in the region where diatoms contributed >50 % to the chl a biomass. In addition, there were statistically significant correlations between the diatom contribution to the chl a biomass and the P–E parameters. These results suggested that the changes in the phytoplankton community composition, primarily in diatoms, could strongly affect photosynthetic physiology in the Australian sector of the Southern Ocean.     

Phenotypic Plasticity of Southern Ocean Diatoms: Key to Success in the Sea Ice Habitat?

Diatoms are the primary source of nutrition and energy for the Southern Ocean ecosystem. Microalgae, including diatoms, synthesise biological macromolecules such as lipids, proteins and carbohydrates for growth, reproduction and acclimation to prevailing environmental conditions. Here we show that three key species of Southern Ocean diatom (Fragilariopsis cylindrus, Chaetoceros simplex and Pseudo-nitzschia subcurvata) exhibited phenotypic plasticity in response to salinity and temperature regimes experienced during the seasonal formation and decay of sea ice. The degree of phenotypic plasticity, in terms of changes in macromolecular composition, was highly species-specific and consistent with each species’ known distribution and abundance throughout sea ice, meltwater and pelagic habitats, suggesting that phenotypic plasticity may have been selected for by the extreme variability of the polar marine environment. We argue that changes in diatom macromolecular composition and shifts in species dominance in response to a changing climate have the potential to alter nutrient and energy fluxes throughout the Southern Ocean ecosystem.     

Emigration and immigration can be important determinants of benthic diatom assemblages in streams

SUMMARY.

• 1 Interspecific differences in diatom abundances in stream drift (plankton), immigration, and natural benthic assemblages were compared to assess the importance of emigration and immigration in benthic diatom community dynamics. Water samples were collected throughout a 24-h period to measure diel changes in diatom drift abundances and to estimate benthic diatom emigration rates. Immigration was assessed with 24-h colonization of bare tiles.
• 2 Dissimilarity in species composition of drift, immigration, and natural substrate assemblages indicated differential emigration and immigration among diatom species.
• 3 A mathematical model indicated that reproduction by diatoms in the plankton could not account for diel drift peaks and that diel variation in drift was an informative measure of benthic diatom emigration.
• 4 Emigration and immigration of some species constituted substantial proportions of diatom abundances on natural substrata. We conclude that emigration into the drift and immigration onto substrata can be important processes that regulate benthic diatom species composition and standing crop in streams.

     

Microbial community transcriptional patterns vary in response to mesoscale forcing in the North Pacific Subtropical Gyre

The physical and biological dynamics that influence phytoplankton communities in the oligotrophic ocean are complex, changing across broad temporal and spatial scales. Eukaryotic phytoplankton (e.g., diatoms), despite their relatively low abundance in oligotrophic waters, are responsible for a large component of the organic matter flux to the ocean interior. Mesoscale eddies can impact both microbial community structure and function, enhancing primary production and carbon export, but the mechanisms that underpin these dynamics are still poorly understood. Here, mesoscale eddy influences on the taxonomic diversity and expressed functional profiles of surface communities of microeukaryotes and particle-associated heterotrophic bacteria from the North Pacific Subtropical Gyre were assessed over 2 years (spring 2016 and summer 2017). The taxonomic diversity of the microeukaryotes significantly differed by eddy polarity (cyclonic versus anticyclonic) and between sampling seasons/years and was significantly correlated with the taxonomic diversity of particle-associated heterotrophic bacteria. The expressed functional profile of these taxonomically distinct microeukaryotes varied consistently as a function of eddy polarity, with cyclones having a different expression pattern than anticyclones, and between sampling seasons/years. These data suggest that mesoscale forcing, and associated changes in biogeochemistry, could drive specific physiological responses in the resident microeukaryote community, independent of species composition.     

Diatom distribution and paleoceanographic reconstruction in the Southern Ocean — Present and last glacial maximum

Diatom assemblage and preservational data are used to reconstruct paleoceanographic conditions at the last glacial maximum (18,000 yrs BP) in the Southern Ocean. From these data, the following points can be made about the last glacial maximum in this region. (1) Contraction and slight northern shift of the belt of well preserved diatoms appears to be related to the northward shift of late spring/early summer sea ice cover. (2) Presence of open-ocean, though poorly preserved, diatom assemblages to the south of this belt strongly suggest that, during many summers, large areas of the Southern Ocean were ice-free. (3) The distribution of theNitzschia kerguelensis factor, both in surface sediments and at the last glacial maximum, indicates that the gyre systems, particularly the Weddell Gyre, were intensified during glacial times. (4) Although data are sparse in the higher-latitude South Atlantic, there is an indication that the Weddell Polynya also existed during glacial times, although it was shifted a few degrees northward.     

Oligotrophic waters of the Northwest Atlantic support taxonomically diverse diatom communities that are distinct from coastal waters

Diatoms are important components of the marine food web and one of the most species-rich groups of phytoplankton. The diversity and composition of diatoms in eutrophic nearshore habitats have been well documented due to the outsized influence of diatoms on coastal ecosystem functioning. In contrast, patterns of both diatom diversity and community composition in offshore oligotrophic regions where diatom biomass is low have been poorly resolved. To compare the diatom diversity and community composition in oligotrophic and eutrophic waters, diatom communities were sampled along a 1,250 km transect from the oligotrophic Sargasso Sea to the coastal waters of the northeast US shelf. Diatom community composition was determined by amplifying and sequencing the 18S rDNA V4 region. Of the 301 amplicon sequence variants (ASVs) identified along the transect, the majority (70%) were sampled exclusively from oligotrophic waters of the Gulf Stream and Sargasso Sea and included the genera Bacteriastrum, Haslea, Hemiaulus, Pseudo-nitzschia, and Nitzschia. Diatom ASV richness did not vary along the transect, indicating that the oligotrophic Sargasso Sea and Gulf Stream are occupied by a diverse diatom community. Although ASV richness was similar between oligotrophic and coastal waters, diatom community composition in these regions differed significantly and was correlated with temperature and phosphate, two environmental variables known to influence diatom metabolism and geographic distribution. In sum, oligotrophic waters of the western North Atlantic harbor diverse diatom assemblages that are distinct from coastal regions, and these open ocean diatoms warrant additional study, as they may play critical roles in oligotrophic ecosystems.     

Changes in diatom-dominated biofilms during simulated improvements in water quality: implications for diatom-based monitoring in rivers

Although benthic diatoms are used to assess river water quality, there are few data on the rate at which diatom assemblages react to changes in water quality. The aim of this study was to assess the reaction time of diatoms and to discuss the changes occurring during water quality improvement on the basis of their autecological characteristics. In order to simulate this improvement, diatom-dominated biofilms grown on artificial sandstone substrata were transferred from several polluted rivers to an unpolluted river. They were sampled three times: before transfer and 1 and 2 months after transfer. The ecology and growth-forms of the taxa explained most of the changes in species composition observed during the experiment. Adnate diatoms gradually replaced motile and stalked taxa. Gomphonema parvulum, a stalked diatom positioned vertically in the biofilm, is adapted for light and space competition in high-density algal biofilms. When transferred to an unpolluted site, this growth-form is less competitive and does not tolerate the high grazing pressure. Fistulifera saprophila is a single celled motile diatom, living in organic matrices. When the artificial substrata were transferred to the unpolluted site, this particular ecological niche disappeared quickly. On the other hand, Achnanthidium minutissimum, which is considered to be cosmopolitan and an early colonizer, increased during the first month of transfer and then decreased. It was gradually replaced by A. biasolettianum, which was the taxon best suited to this pristine stream. The changes observed differed between treatments depending on the species composition and architecture of the biofilms. In particular, biofilms dominated by stalked and motile diatoms were more quickly modified than those dominated by small motile diatoms. The diatom index reflects these changes, and its values showed that about 60 days following a water quality improvement were necessary for transferred diatom assemblages to reach diatom index values similar as those at the unpolluted river.     

RELATIONSHIP BETWEEN PERIODIC RESUSPENSION EVENTS AND PHYTO-PLANKTON BLOOMS IN LAKE MICHIGAN

Lake Michigan provides an ideal location for comparing episodic physical forcing effects (storm events) on phytoplankton processes and the more persistent seasonal variability of phytoplankton communities. This is because of the duration and extent of the highly turbid, recurrent coastal plume (RCP) in the lake during the winter/early spring. Although the RCP coincides with the initiation of the basin wide spring diatom bloom, linkages between the duration and intensity of the plume and the prominent role of light availability in regulating Lake Michigan phytoplankton growth during the spring isothermal period have been postulated, but not verified. As such the concurrent physical and biological events provide a novel opportunity to examine how variations in biological rate processes, coupled with transport and resuspension phenomena associated with the RCP, affect the distributions of organisms, evolution of communities, and growth and primary production of Lake Michigan phytoplankton. In this study, phytoplankton assemblages from pre, post, and active plume events are examined from three stations in Lake Michigan. Species assemblages include chlorophytes, chrysophytes, and diatoms. The diatom flora was particularly abundant. Species composition changed rapidly during storm events, with resting cell forming taxa playing a significant role in these modifications. Ephemeral species appeared during the circulation event and decreased once storm activity subsided. Other taxa were able to establish themselves in the phytoplankton community during the plume events and persisted after storm activity subsided. Understanding activity during these circulation events will lead to a better understanding of overall community structure development throughout the year.     

Summer distribution of netphytoplankton in the Atlantic sector of the Southern Ocean

The surface distribution of netphytoplankton (>20 m) in the Atlantic sector of the Southern Ocean was investigated along two transects during early and late austral summer 1990/91. Sampling was under-taken at intervals of 60 of latitude between 34° and 70°S for the analysis of nutrients and for the identification and enumeration of netphytoplankton. Peaks in total diatom abundances were recorded at the Antarctic Polar Front (APF), in the vicinity of the South Sand wich Islands, in the marginal ice zone and in the neritic waters of the Atlantic sector of Antarctica. Cluster analysis indicates the existence of two major zones between Southern Africa and Antarctica. Diatom abundance increased south of the Antarctic Polar From along both transects, which can be partially explained by gradients of silicate concentration. Small chain-forming species (e.g. Fragilariopsis kerguelensis and Nitzschia lineata) dominated the diatom assemblages in early summer, while larger species, such as Rhizosolenia hebetata f. semispina and Corethron criophilum, dominated late summer diatom assemblages. The predominance of typically ice-associated forms in early summer suggests that the release of epontic cells during ice melt provides the initial inoculum for the netphytoplankton biomass. These small diatoms are subsequently replaced by larger species.     

Growth form analysis of epiphytic diatom communities of Terra Nova Bay (Ross Sea, Antarctica)

Diatoms have been long collected from the Southern Ocean but almost no data exist for epiphytic communities, despite their high ecological significance as an important food source in Antarctic coastal food chains. Here, we present a first growth form analysis of diatoms associated with rhodophyte hosts from Terra Nova Bay, Ross Sea, Antarctica. We performed this study to gather baseline information on the species composition of epiphytic diatom communities, determine the influence of some environmental variables on the diatom distribution patterns, and assess the caveats that must be taken into account in terms of sampling design. Macroalgal material was collected during the Italian Antarctic expeditions between 1990 and 2004. Epiphytic diatoms were studied by means of scanning electron microscopy. In terms of growth forms, there were no significant differences between the diatom communities on the different macroalgal host species. Motile (mainly small-celled Navicula perminuta and other Navicula spp.) and adnate (Cocconeis spp.) diatoms dominated the community throughout the study period. Many of the macroalgal blades examined were also covered by epiphytic animals (calcareous bryozoans, hydroids) over most of their surface, with a significant effect on the associated diatom community structure. Our findings suggest that the bio-physicochemical characteristics of each sampling site affected the epiphytic diatom communities more than the substrate type provided by the macroalgal host or the sampling depth.     

Seasonal shifts in the assembly dynamics of benthic macroinvertebrate and diatom communities in a subtropical river

Identifying seasonal shifts in community assembly for multiple biological groups is important to help enhance our understanding of their ecological dynamics. However, such knowledge on lotic assemblages is still limited. In this study, we used biological traits and functional diversity indices in association with null model analyses to detect seasonal shifts in the community assembly mechanisms of lotic macroinvertebrates and diatoms in an unregulated subtropical river in China. We found that functional composition and functional diversity (FRic, FEve, FDis, MNN, and SDNN) showed seasonal variation for macroinvertebrate and diatom assemblages. Null models suggested that environmental filtering, competitive exclusion, and neutral process were all important community assembly mechanisms for both biological groups. However, environmental filtering had a stronger effect on spring macroinvertebrate assemblages than autumn assemblages, but the effect on diatom assemblages was the same in both seasons. Moreover, macroinvertebrate and diatom assemblages were shaped by different environmental factors. Macroinvertebrates were filtered mainly by substrate types, velocity, and COD_Mn, while diatoms were mainly shaped by altitude, substrate types, and water quality. Therefore, our study showed (a) that different biological assemblages in a river system presented similarities and differences in community assembly mechanisms, (b) that multiple processes play important roles in maintaining benthic community structure, and (c) that these patterns and underlying mechanisms are seasonally variable. Thus, we highlight the importance of exploring the community assembly mechanisms of multiple biological groups, especially in different seasons, as this is crucial to improve the understanding of river community changes and their responses to environmental degradation.     

Paleoecological significance of laminated diatomaceous oozes during the middle-to-late Pleistocene,North Atlantic Ocean (IODP Site U1304)

We examined diatom assemblages in a series of remarkable laminated diatomaceous ooze (LDO) horizons in the marine sediments from Integrated Ocean Drilling Program (IODP) Site U1304 to reconstruct the middle-to-late Pleistocene paleoceanographic evolution of the northern North Atlantic Ocean. Four confirmed diatom biohorizons combined with calcareous nannofossil and paleomagnetic stratigraphies established the chronological framework for the material. The planktonic, araphid, needle-like species Thalassiothrix longissima was the greatest contributor to the LDO facies. From the results of a principal component analysis using the percent abundances of 65 significant (p = 5%) diatom taxa, except for Tx. longissima, which was extremely dominant in almost all horizons observed, we identified two principal component (PC) axes. Taxa probably associated with the stratigraphic distribution of the major zonal marker Neodenticula seminae (ranging from 1.26 to 0.84 Ma in this ocean) loaded on PC1 with a high value. PC2 was related to the ocean surface temperature. The stratigraphic variability of the PC2 score indicated that switching between warm- and cold-water assemblages occurred concurrently with LDO deposition (or extreme Tx. longissima dominance) episodes in several horizons (particularly after 0.84 Ma), suggesting that the Subarctic Convergence (SAC) oceanic front passed over Site U1304 during Pleistocene glacial/interglacial cycles. Our floral evidence supports the model of nearly monospecific LDO formation caused by the enhanced physical accumulation of particular diatoms such as Tx. longissima. On the other hand, Nd. seminae, which probably contributes to spring phytoplankton blooms in the modern ocean, was present only between 1.26 and 0.84 Ma in this area. Thus, we infer that the main contributor of export flux in the regional annual primary production cycle would have shifted drastically from one of a spring phytoplankton bloom leader (Nd. seminae) to minor but mass dump assemblages (Tx. longissima etc.) in the mid-Pleistocene.     

The ecology of a diatom community in a thermal stream

From 1964 to 1967 the annual variations in the relative abundance of diatoms in a thermal stream draining a hot spring were examined for changes in species diversity (H) and redundancy (R). Despite large seasonal changes in abundance and shifts in the species composition, the values in general did not deviate significantly from the calculated mean diversity value. This relative constancy of H was interpreted as an indication of diatom community stability. The species exhibited a characteristic pattern of seasonal abundance that is thought be to partially attributable to a light adaptation phenomenon. Three cores were obtained from the soft sediment of the spring and were analysed for diatom remains. The cores were dated by a pumice layer of known age and interpretations relative to the ontogeny of the diatom community added a significant time dimension to the yearly diatom analysis.     

Concordance among stream assemblages and spatial autocorrelation along a fragmented gradient

Patterns of spatial autocorrelation of biota and distributional similarity (concordance) between assemblages of different organism groups have important implications in both theoretical ecology and biodiversity conservation. Here we report environmental gradients and spatial distribution patterns of taxonomic composition among stream fish, benthic macroinvertebrate, and diatom assemblages along a fragmented stream in south‐western France. We quantified spatial patterns of lotic assemblage structure along this stream, and we tested for concordance in distribution patterns among the three taxonomic groups. Our results showed that both environmental characteristics and stream assemblages were spatially autocorrelated. For stream fish and diatom assemblages, these patterns reflected assemblage changes along the longitudinal stream gradient, whereas environmental variables and benthic macroinvertebrates exhibited a more patchy spatial pattern. Cross‐taxa concordance was significant between stream fish and diatoms, and between stream fish and benthic macroinvertebrates. The assemblage concordance between stream fish and diatoms could be attributed to similar responses along the longitudinal gradient, whereas those between stream fish and benthic macroinvertebrates may result from biotic interactions. Based on potential dispersal capacities of taxa, our results validated the hypotheses that weakly dispersing taxa exhibit greater concordance than highly dispersing ones and that dispersal capacities affect how taxonomic groups respond to their local environment. Both diatoms and highly dispersing stream fish were affected by stream fragmentation (i.e. the number of dams between sites), while the effect of fragmentation was not significant for invertebrates that fly well in their adult stage, thus emphasizing the importance of the way of dispersal. These results suggest that addressing the effects of dispersal capacity on stream assemblage patterns is crucial to identifying mechanisms behind patterns and to better understanding the determinants of stream biodiversity.     

南海某些表层沉积硅藻的分布及其古环境意义

本文通过对南海表层沉积物样品的硅藻分析,试图揭示南海某些表层沉积硅藻的分布规律,以便为南海古海洋学研究提供科学依据。研究发现,Thalassionema nitzshioides为南海地区表层沉积硅藻的优势种,且其百分含量无明显的区域差异,体现了南海与周围海洋水体交换相对较弱的特征。除此之外,南海表层沉积硅藻的分布主要受到海洋环流的影响,表现在黑潮暖流、印度洋暖水的入侵以及沿岸流对南海表层沉积硅藻分布的影响。其中,Nitzshia marina, Azpeitia neocrenulata , Azpeitia africana , Rhizosolenia bergonii等暖水硅藻可作为黑潮暖流及印度洋暖水入侵南海强度的指标种。而Cyclotella stylorum , Cyclotella striata , Diploneis bombus , Traychneis aspera , Tabularia tabulata等则可看作判断沿岸流对南海水体影响强度的标志种。