Shedding light on fish otolith biomineralization using a bioenergetic approach

Otoliths are biocalcified bodies connected to the sensory system in the inner ears of fish. Their layered, biorhythm-following formation provides individual records of the age, the individual history and the natural environment of extinct and living fish species. Such data are critical for ecosystem and fisheries monitoring. They however often lack validation and the poor understanding of biomineralization mechanisms has led to striking examples of misinterpretations and subsequent erroneous conclusions in fish ecology and fisheries management. Here we develop and validate a numerical model of otolith biomineralization. Based on a general bioenergetic theory, it disentangles the complex interplay between metabolic and temperature effects on biomineralization. This model resolves controversial issues and explains poorly understood observations of otolith formation. It represents a unique simulation tool to improve otolith interpretation and applications, and, beyond, to address the effects of both climate change and ocean acidification on other biomineralizing organisms such as corals and bivalves.     

Hatching patterns and larval growth of a triplefin from central Chile inferred by otolith microstructure analysis

The subtidal rocky reefs are home to a diverse range of marine animals, including small cryptic fishes, characterised by a bipartite life cycle, with benthic adults and pelagic larval stage that lasts from several days to several months. Using the otolith microstructure analysis, this study determines the hatching and larval growth patterns of the abundant triplefin Helcogrammoides chilensis (Pisces: Tripterygiidae). Fish larvae were collected during September–October 2010 and between July 2012 and April 2013 in nearshore waters (<500 m) of central Chile. Nearshore time series of ichthyoplankton samples showed that large abundance of this species occurs during early austral spring and autumn seasons. Body lengths ranged from 3.11 to 16.57 mm (1–57 days old). Sagittal microincrement analyses estimate that during the main reproductive season, larval growth rates are slow, varying between 0.145 and 0.156 mm day^?1 at a weekly scale. Back-calculated hatch days and circular statistics indicate a major hatch pulse occurring near full moon of the lunar cycle. These results suggest that reproduction occurs coupled with the upwelling season, which reduces the probability of starvation, and hatching occurs during spring tides (full moon), which increases larval dispersion and population connectivity.     

Gene flow by larval dispersal in the Antarctic notothenioid fish Gobionotothen gibberifrons

The diversification of the teleost suborder Notothenioidei (Perciformes) in Antarctic waters provides one of the most striking examples of a marine adaptive radiation. Along with a number of adaptations to the cold environment, such as the evolution of antifreeze glycoproteins, notothenioids diversified into eight families and at least 130 species. Here, we investigate the genetic population structure of the humped rockcod ( Gobionotothen gibberifrons ), a benthic notothenioid fish. Six populations were sampled at different locations around the Scotia Sea, comprising a large part of the species' distribution range ( N  = 165). Our analyses based on mitochondrial DNA sequence data (352 bp) and eight microsatellite markers reveal a lack of genetic structuring over large geographic distances (Φ_ST ≤ 0.058, F _ST ≤ 0.005, P values nonsignificant). In order to test whether this was due to passive larval dispersal, we used GPS-tracked drifter trajectories, which approximate movement of passive surface particles with ocean currents. The drifter data indicate that the Antarctic Circumpolar Current (ACC) connects the sampling locations in one direction only (west–east), and that passive transport is possible within the 4-month larval period of G. gibberifrons . Indeed, when applying the isolation-with-migration model in IMA, strong unidirectional west-east migration rates are detected in the humped rockcod. This leads us to conclude that, in G. gibberifrons , genetic differentiation is prevented by gene flow via larval dispersal with the ACC.     

Easy transfer of selected mitoses from light to electron microscopy

A method is described whereby any given chromosome spread selected by light microscopy can be transferred to a grid and studied by electron microscopy.     

FITC-Dextran tracers in microcirculatory and permeability studies using combined fluorescence stereo microscopy,fluorescence light microscopy and electron microscopy

Summary Coupling fluorescein-isothiocyanate to dextrans (FITC-D) extends the usefulness of the dextrans as electron microscopic tracer particles by permitting preceding fluorescence stereo microscopy and high-power light microscopy of the tissue specimens. The fate of the tracer may thus be studied in vivo during the experiment, during fixation, and during the succeeding tissue processing. A study of some simple physicochemical characteristics of the tracer, and the influence, if any, of the fixing agent are also made possible. FITC-D was found to be uncharged in the pH range from 6.5 to 8.5, more rapidly precipitated by acetone than by alcohol, and to react with glutaraldehyde and osmium tetroxide in an unknown way during tissue fixation. FITC-D with molecular weights 70,000 and 150,000 showed no signs of diffusion during tissue preparation with the methods reported in the paper, whereas FITC-D 40,000 did so to a slight degree, when the tissue was kept for several days in the fixative vehicle. Securing the preservation of the lower molecular weight FITC-Ds during tissue fixation and preparation is more difficult and the described methods are not adequate. Dextrans provoke an anaphylactic reaction in most rat strains, but are well tolerated by Wistar Furth rats. The introduction of FITC into the dextran molecule might alter the biological reactions, but was also well tolerated by Wistar Furth rats. Combined fluorescence stereo microscopy, fluorescence microscopy of sections, light microscopy of stained sections and electron microscopy made it possible to follow a particular microcirculatory area, selected in vivo, to the final study in the electron microscope.     

A new entomopoxvirus from a cockroach: light and electron microscopy

The cockroach entomopoxvirus caused a chronic infection in cultures of the German cockroach Blattella germanica. Heavily infected specimens showed a reduced mobility. Ellipsoid virus occlusion bodies (8 x 5 to 19 x 12 microm) were found intracellularly in tracheole cells, in the hypodermis, in fat body cells, and in muscles. Several hundred virus particles were integrated in a single occlusion body (OB), their long axis being oriented axially. Ovoid viroids measured 320 x 190 nm and possessed a unilateral, concave core and one lateral body. Starting occlusion, small granules attached to the virus particles which later transformed to a beaded, wavy envelope. An initial halo around the occluded virions disappeared in more central regions of the OB. Virus particles were formed either in a dense cytoplasmic area containing electron-dense viroids, or in a loosely aggregated viroplasm. In the latter, developmental stages were mainly represented by spheres with double membranes enclosing granular material. Spindles and larger crystal-like virus-free inclusion bodies occurred in the cytoplasm. The cytoplasm of infected cells appeared degenerated and the chromatin of the nuclei condensed at the periphery or disintegrated. Taxonomically, the described virus exhibits features of both EPV genus A and EPV genus B. Provisory it is named Blattella germanica EPV (BgEPV). A possible use of the cockroach EPV as a biological control agent is discussed.     

FITC-dextran tracers in microcirculatory and permeability studies using combined fluorescence stereo microscopy, fluorescence light microscopy and electron microscopy

Coupling fluorescein-isothiocyanate to dextrans (FITC-D) extends the usefulness of the dextrans as electron microscopic tracer particles by permitting preceding fluorescence stereo microscopy and high-power light microscopy of the tissue specimens. The fate of the tracer may thus be studied in vivo during the experiment, during fixation, and during the succeeding tissue processing. A study of some simple physicochemical characteristics of the tracer, and the influence, if any, of the fixing agent are also made possible. FITC-D was found to be uncharged in the pH range from 6.5 to 8.5, more rapidly precipitated by acetone than by alcohol, and to react with glutaraldehyde and osmium tetroxide in an unknown way during tissue fixation. FITC-D with molecular weights 70,000 and 150,000 showed no signs of diffusion during tissue preparation with the methods reported in the paper, whereas FITC-D 40,000 did so to a slight degree, when the tissue was kept for several days in the fixative vehicle. Securing the preservation of the lower molecular weight FITC-Ds during tissue fixation and preparation is more difficult and the described methods are not adequate. Dextrans provoke an anaphylactic reaction in most rat strains, but are well tolerated by Wistar Furth rats. The introduction of FITC into the dextran molecule might alter the biological reactions, but was also well tolerated by Wistar Furth rats. Combined fluorescence stereo microscopy, fluorescence microscopy of sections, light microscopy of strained sections and electron microscopy made it possible to follow a particular microcirculatory area, selected in vivo, to the final study in the electron microscope.     

Thermostability of haemoglobins from Antarctic fish

Summary Proteins from Antarctic fish are less stable at high temperatures than those from fish from lower latitudes. Investigations into the thermostability of haemoglobins from a range of Antarctic teleosts have been carried out for comparison with data from temperate species. Haemoglobin concentrations following periods of heating at 50°C were analysed spectrophotometrically and the time taken for 50% denaturation (t_50%) determined. The effects of pH and salt concentrations were also examined. With the exception of that of Rhigophila dearborni, the haemoglobins were found to be relatively unstable with t_50% values ranging from 7.7 to 29.9 min at pH 7. All haemoglobins became less stable on addition of KCl but the effect of pH was variable. Freezing had no effect on the stability of haemoglobin from Dissostichus mawsoni. The thermostability of haemoglobin from a temperate nototheniid, Notothenia angustata, was within the range displayed by its antarctic relatives and it would seem that in general the differences between genera are as great as those between Antarctic and temperate species as a whole.     

Bismuth staining for light and electron microscopy.

Bismuth salts on aldehyde fixed tissue give a highly selective pattern of staining suitable for light and electron microscopy. Structures stained include the nucleolus, ribosomes, inter- and perichromatin granules, the Golgi complex beads and the outer face of the tubule doublets of mouse sperm, certain neurosecretory vesicles believed to contain biogenic amines, some junctions (some central synapses, neuromuscular junctions, tight junctions), specialized membranes such as the post acrosomal dense lamina of mouse sperm and the inner alveolar membrane of Paramecium, and a variety of structures associated with the cytoplasmic face of membranes, such as plasma membrane plaques, cleavage furrows, the leading edge of the spreading acrosome and sperm annuli.Staining is not reduced by nucleases and spot tests show no reaction between nucleic acids and bismuth under conditions similar to those used to stain tissues. However, spot tests do show strong binding of bismuth by basic proteins and by some phosphorylated molecules.It is hypothesized that bismuth reacts with cell components in two ways, distinguishable by their glutaraldehyde sensitivity. For example, staining of the nucleolus and ribosomes is blocked by glutaraldehyde but the inter- and perichromatin granules and the GC beads are unaffected. Spot tests show that basic proteins (histones, protamines, polylysine and polyargenine) and other molecules with free amino groups (5HT, tryptamine, dopamine) bind bismuth strongly, a reaction that is blocked to varying degrees by glutaraldehyde. We presume that most bismuth staining of tissues is due to reaction with amine groups and is glutaraldehyde sensitive and some may be due to guanidine groups which are less sensitive to fixation by glutaraldehyde. Organic phosphates may be the cause of the glutaraldehyde insensitive staining since ATP and some other phosphates bind bismuth in a reaction that is not blocked by glutaraldehyde.     

Near-infrared branding efficiently correlates light and electron microscopy

The correlation of light and electron microscopy of complex tissues remains a major challenge. Here we report near-infrared branding (NIRB), which facilitates such correlation by using a pulsed, near-infrared laser to create defined fiducial marks in three dimensions in fixed tissue. As these marks are fluorescent and can be photo-oxidized to generate electron contrast, they can guide re-identification of previously imaged structures as small as dendritic spines by electron microscopy.     

An ultrastructural readout of fluorescence recovery after photobleaching using correlative light and electron microscopy

Fluorescence recovery after photobleaching (FRAP) provides an important quantitative readout of the mobility of fluorescently tagged structures in live tissue. Here we present a protocol for visualizing FRAP signal at the ultrastructural level, permitting the nature of recovered fluorescence signal to be studied at greater resolution than afforded by conventional light microscopy. Specifically we use FRAP, fixation, photoconversion and correlative light and electron microscopy (CLEM) to examine the ultrastructural organization of mobile FM1-43-labeled vesicles in synapses of cultured hippocampal neurons. At photobleached synapses, the FRAP signal can be visualized as photoconverted electron-dense vesicles. The combination of FRAP and CLEM provides a powerful tool for examining the specific localization of imported vesicles in relation to synaptic architecture. Moreover, with the increasing availability of photoconvertible fluorophores, this approach should be readily applicable to other systems where an ultrastructural characterization of FRAP signal is desirable. After cultures are prepared and ready to use, this protocol takes 2-3 days.     

Localization of fluorescently labeled structures in frozen-hydrated samples using integrated light electron microscopy

Correlative light and electron microscopy is an increasingly popular technique to study complex biological systems at various levels of resolution. Fluorescence microscopy can be employed to scan large areas to localize regions of interest which are then analyzed by electron microscopy to obtain morphological and structural information from a selected field of view at nm-scale resolution. Previously, an integrated approach to room temperature correlative microscopy was described. Combined use of light and electron microscopy within one instrument greatly simplifies sample handling, avoids cumbersome experimental overheads, simplifies navigation between the two modalities, and improves the success rate of image correlation. Here, an integrated approach for correlative microscopy under cryogenic conditions is presented. Its advantages over the room temperature approach include safeguarding the native hydrated state of the biological specimen, preservation of the fluorescence signal without risk of quenching due to heavy atom stains, and reduced photo bleaching. The potential of cryo integrated light and electron microscopy is demonstrated for the detection of viable bacteria, the study of in vitro polymerized microtubules, the localization of mitochondria in mouse embryonic fibroblasts, and for a search into virus-induced intracellular membrane modifications within mammalian cells.     

A first attempt at determining larval growth in three Antarctic fish from otoliths and RNA/DNA ratios

Otolith growth and RNA/DNA ratios of larval stages of Notolepis coatsi, Gobionotothen gibberifrons and Trematomus scotti, three Antarctic fish, were studied during early 1998. RNA/DNA ratios were significantly different between the notothenioids and paralepidids (P<0.01), but similar among notothenioids (P>0.05). The ratios were independent of larval total length and water temperature. Recent otolith growth (based on the last five increments) and biochemical indices correlated slightly, but not significantly. N. coatsi inhabited deeper and colder waters of the Weddell Sea and showed less growth than the other species, which are associated with the Antarctic Peninsula. In all three species, some larvae had very good growth rates though most were rather poor. Recent growth indices might allow the detection and back-dating of growth changes in Antarctic larvae, and provide insight into a crucial yet poorly understood life-phase of these fish.     

Consecutive light microscopy, scanning-transmission electron microscopy and transmission electron microscopy of traumatic human brain oedema and ischaemic brain damage

Cortical biopsies of 11 patients with traumatic brain oedema were consecutively studied by light microscopy (LM) using thick plastic sections, scanning-transmission electron microscopy ((S)TEM) using semithin plastic sections and transmission electron microscopy (TEM) using ultrathin sections. Samples were glutaraldehyde-osmium fixed and embedded in Araldite or Epon. Thick sections were stained with toluidine-blue for light microscopy. Semithin sections were examined unstained and uncoated for (S)TEM. Ultrathin sections were stained with uranyl and lead. Perivascular haemorrhages and perivascular extravasation of proteinaceous oedema fluid were observed in both moderate and severe oedema. Ischaemic pyramidal and non-pyramidal nerve cells appeared shrunken, electron dense and with enlargement of intracytoplasmic membrane compartment. Notably swollen astrocytes were observed in all samples examined. Glycogen-rich and glycogen-depleted astrocytes were identified in anoxic-ischaemic regions. Dark and hydropic satellite, interfascicular and perivascular oligodendrocytes were also found. The status spongiosus of severely oedematous brain parenchyma observed by LM and (S)TEM was correlated with the enlarged extracellular space and disrupted neuropil observed by TEM. The (S)TEM is recommended as a suitable technique for studying pathological processes in the central nervous system and as an informative adjunct to LM and TEM.     

Scanning electron microscopic analysis of annulus microstructure in otolith of European eel, Anguilla anguilla

To validate the yearly periodicity of annulus formation in the otolith of the eel, the structure of annuli in otoliths of the European eel, Anguilla anguilla , stocked for 7 and 12 years in Lake Ommen on the east coast of southern Sweden, was examined. The population was stocked from elvers imported both from France (Bay of Biscay) in April 1979 and England (River Severn) in March–April 1984. The microstructure of an annulus consisted of single, double and/or composite tings depending on the location in the otolith. The counts of annuli in otoliths of these eels were approximately consistent with the expected age. However, supernumerary false annuli and/or annulus underestimation frequently occurred. The methodology for annulus discrimination with light and scanning electron microscopes is described.     

Resolution of the early life history of a reef fish using otolith chemistry

We used the elemental signatures in otoliths of the damselfish Pomacentrus coelestis as a proxy for conditions experienced prior to settlement. Fish from the southern Great Barrier Reef (GBR) differed in their pre-settlement otolith chemistry, indicating that they had occupied different water masses during their pelagic stage, thus suggesting multiple larval sources. Fish from reefs in the northern GBR did not differ greatly in their pre-settlement otolith chemistry, suggesting a single larval source. Using near-natal signatures, we determined that ~67% of these signatures matched the signature established for Lizard Island (LZ), suggesting LZ could be a source reef. However, these results could also be the result of poor separation among reefs caused by reefs sharing water masses. Otolith chemistry also revealed that 50–70% of all fish examined settled on the reef the day they encountered it, while some fish spent up to 4 days near the reef prior to settlement.