Cross-sectional geometric properties of the Otavipithecus mandible

Cross-sectional geometric properties of the postcanine mandibular corpus are determined for the only known specimen of Otavipithecus namibiensis, a middle Miocene hominoid from southern Africa. It is shown that Otavipithecus is unique in that several important mechanical properties of its mandible, including maximum and minimum moments of inertia and distribution of cortical bone, differ from patterns seen in both extant hominoids and the early hominids Australopithecus africanus and Australopithecus (Paranthropus) robustus. This is particularly apparent in the mechanical design of the posterior portion of the mandibular corpus for resisting increased torsional and transverse bending moments. Cortical index values at the level of M₂ also reveal that both Otavipithecus and A. africanus are similarly designed to resist increased masticatory loads with relatively less cortical bone area, a highly efficient mechanical design. © 1996 Wiley-Liss, Inc.     

Monte Carlo evaluation of the dose calculation algorithm of TomoTherapy for clinical cases in dynamic jaws mode

PurposeFor the TomoTherapy^® system, longitudinal conformation can be improved by selecting a smaller field width but at the expense of longer treatment time. Recently, the TomoEdge^® feature has been released with the possibility to move dynamically the jaws at the edges of the target volume, improving longitudinal penumbra and enabling faster treatments. Such delivery scheme requires additional modeling of treatment delivery. Using a previously validated Monte Carlo model (TomoPen), we evaluated the accuracy of the implementation of TomoEdge in the new dose engine of TomoTherapy for 15 clinical cases.MethodsTomoPen is based on PENELOPE. Particle tracking in the treatment head is performed almost instantaneously by 1) reading a particle from a phase-space file corresponding to the largest field and 2) correcting the weight of the particle depending on the actual jaw and MLC configurations using Monte Carlo pre-generated data. 15 clinical plans (5 head-and-neck, 5 lung and 5 prostate tumors) planned with TomoEdge and with the last release of the treatment planning system (VoLO^®) were re-computed with TomoPen. The resulting dose-volume histograms were compared.ResultsGood agreement was achieved overall, with deviations for the target volumes typically within 2% (D₉₅), excepted for small lung tumors (17 cm³) where a maximum deviation of 4.4% was observed for D₉₅. The results were consistent with previously reported values for static field widths.ConclusionsFor the clinical cases considered in the present study, the introduction of TomoEdge did not impact significantly the accuracy of the computed dose distributions.     

A unique mechanism for the processive movement of single-headed myosin-IX

It has been puzzled that in spite of its single-headed structure, myosin-IX shows the typical character of processive motor in multi-molecule in vitro motility assay, because this cannot be explained by hand-over-hand mechanism of the two-headed processive myosins. Here, we show direct evidence of the processive movement of myosin-IX using two different single molecule techniques. Using optical trap nanometry, we found that myosin-IX takes several large ( approximately 20nm) steps before detaching from an actin filament. Furthermore, we directly visualized the single myosin-IX molecules moving on actin filaments for several hundred nanometers without dissociating from actin filament. Since myosin-IX processively moves without anchoring the neck domain, the result suggests that the neck tilting is not involved for the processive movement of myosin-IX. We propose that the myosin-IX head moves processively along an actin filament like an inchworm via a unique long and positively charged insertion in the loop 2 region of the head.     

Morphological evolution in the mandible of spiny rats, genus Trinomys (Rodentia: Echimyidae)

The development and evolution of the rodent mandible have been studied in depth in recent years. The mandible is a complex structure because it consists of six morphogenetic components formed by different condensations of mesenchymal cells. Using recent techniques for the geometric analysis of shape, we have combined developmental information with a powerful quantification of shape variation and an independent estimate of phylogeny (molecular data) to assess the evolutionary patterns of shape change in mandibles of the rodent genus Trinomys . In general, the major trends in shape variation did not agree with the expected phylogenetic pattern. However, for small-scale morphological differences, one species ( T. yonenagae ) was responsible for the lack of association between morphology and molecular divergence. This species is genetically similar to but morphologically different from other Trinomys . The coronoid process was considered to be the most conservative morphogenetic component in the mandible.     

裸花紫珠治疗烧烫伤模型大鼠活性部位的筛选及其作用机制研究

为筛选裸花紫珠治疗烧烫伤的活性部位,并初步研究其作用机制。实验采用90°C热水造成大鼠烫伤模型。以伤口面积大小,伤口性状,如颜色、软硬程度等为指标,通过宏观和微观检测筛选裸花紫珠治疗烧烫伤的活性部位。采用ELISA和Western blot等方法初步研究其作用机制。进入组织增生重塑期后,石油醚组相较其它各组,伤口愈合最为显著;在组织增生最后的成熟期,石油醚组的表皮和真皮恢复得最好,伤疤最小。石油醚组的VEGF浓度在早期出现了明显的上调;在第21天时,TGF-β1的表达水平最低。裸花紫珠治疗烧烫伤的活性部位初步推测在石油醚层,其治疗烧烫伤作用机制可能是早期裸花紫珠使VEGF上调,在后期下调了TGF-β1以达到。本研究为裸花紫珠治疗烧烫伤的进一步研究和应用提供依据。     

Proteases from Bacillus: a new insight into the mechanism of action for rhizobacterial suppression of nematode populations

AIMS: The aim of this study was to investigate the role of proteases in Bacillus spp. of rhizobacteria in suppressing nematode populations and to understand their mechanism of action. METHODS AND RESULTS: Rhizobacteria with nematicidal activity were isolated from soil samples of five root knot nematode-infested farms. Among these strains, nematotoxicities of Bacillus strains were intensively analysed. Further assays of nematicidal toxins from Bacillus sp. strain RH219 indicated an extracellular cuticle-degrading protease Apr219 was an important pathogenic factor. The Apr219 shared high similarity with previously reported cuticle-degrading proteases from Brevibacillus laterosporus strain G4 and Bacillus sp. B16 (Bacillus nematocida). The cuticle-degrading protease genes were also amplified from four other nematicidal Bacillus strains isolated from the rhizosphere. In addition to Apr219, a neutral protease Npr219 from Bacillus sp. RH219 was also investigated for activity against nematodes. CONCLUSIONS: The wide distribution of cuticle-degrading proteases in Bacillus strains with nematicidal activity suggested that these enzymes likely play an important role in bacteria-nematode-plant-environment interactions and that they may serve as important nematicidal factors in balancing nematode populations in the soil. SIGNIFICANCE AND IMPACT OF THE STUDY: Increased understanding of the mechanism of action of Bacillus spp. against nematodes could potentially enhance the value of these species as effective nematicidal agents and develop new biological control strategies.     

Early ontogenetic ecology of sofie Chondrostoma toxostoma: an integrated approach to organism‐environment relationships

The influence of early life development on the swimming performance of the endangered sofie Chondrostoma toxostoma was examined to highlight trends in organism‐environment relationships. Sudden occurrences of change in integrated function were found and these were most decisive, in particular with respect to microhabitat use, between the larval and juvenile periods of development. Stabilization of relative growth, i.e . end of the remodelling process (metamorphosis), occurred well after all larval characteristics (remnants of finfold and rapid allometric growth) had disappeared and all juvenile structures had appeared (nasal septa and complete scale cover). The fact that stabilization of relative growth coincided with dramatic shifts in microhabitat use (organism needs) as well as in swimming capacity (organism skills) suggests a more 'decisive' type of change in organism‐to‐environment interaction than one purely of form, i.e . shift from nursery to adult habitat.     

Inter‐ and intra‐observer variation in the reporting of cervical smears: specialist cytopathologists versus histopathologists

One hundred and ten cervical smears were circulated to five specialist consultant cytopathologists and five consultant histopathologists. Of these smears, 100 were randomized and re‐circulated. The cytopathologists reported endocervical cells and wart virus infection more frequently than the histopathologists, although neither group showed good inter‐observer agreement for either assessment. Apart from smear adequacy and the presence of endocervical cells, both groups showed good intra‐observer agreement in all the parameters measured. This suggests that overall individuals were applying their own personal criteria with consistency over time, although a previous study had shown considerable lack of inter‐observer agreement among the histopathologists on the grade of dyskaryosis and the management recommendation. The results indicate that specialist cytopathologists bring a different viewpoint to the reporting of cervical smears than histopathologists. They also show a lack of standardization in the reporting of smears despite the guidelines issued by the British Society for Clinical Cytology.     

The role of peristomatal transpiration in the mechanism of stomatal movement

Abstract. Peristomatal transpiration is defined as the relative high local rate of cuticular water loss from external and internal surfaces around the stomatal pore and its decisive role in the control of stomatal movement is re-emphasized. As the resistance towards changes in air humidity is low in the pore surroundings, the state of turgor is particularly unsteady there. Due to the inherent instability the guard cell 'senses' fluctuations in the supply-demand relationship of water and is thus the control unit proper. The environmental variables (supply and demand) are cross-correlated within the subsidiary cell and the information is transmitted to the guard cell through the water potential gradient between the two cells. A conceptual segregation of a 'humidity response' by 'passive' stomatal movements is rejected.
As ions always accumulate at the most distant point of the liquid path and as this point varies with pore width according to the prevailing water potential gradients, it is felt that the water stream is causing the characteristic pattern of ion distribution within the epidermis. Passive import of ions is attributed to local concentration gradients which are steepened by continuous supply and by water uptake into the guard cell in response to starch hydrolysis. A mechanistic model supplements the discussion.     

Proposed mechanism of inactivating Escherichia coli O157:H7 by ultra‐high pressure in combination with tert‐butylhydroquinone

Aims: Investigating mechanisms of lethality enhancement when Escherichia coli O157:H7, and selected E. coli mutants, were exposed to tert‐butylhydroquinone (TBHQ) during ultra‐high pressure (UHP) treatment. Methods and Results: Escherichia coli O157:H7 EDL‐933, and 14 E. coli K12 strains with mutations in selected genes, were treated with dimethyl sulfoxide solution of TBHQ (15–30 ppm), and processed with UHP (400 MPa, 23 ± 2°C for 5 min). Treatment of wild‐type E. coli strains with UHP alone inactivated 2·4–3·7 log CFU ml^?1, whereas presence of TBHQ increased UHP lethality by 1·1–6·2 log CFU ml^?1; TBHQ without pressure was minimally lethal (0–0·6 log reduction). Response of E. coli K12 mutants to these treatments suggests that iron–sulfur cluster‐containing proteins ([Fe–S]‐proteins), particularly those related to the sulfur mobilization (SUF system), nitrate metabolism, and intracellular redox potential, are critical to the UHP–TBHQ synergy against E. coli. Mutations in genes maintaining redox homeostasis and anaerobic metabolism were associated with UHP–TBHQ resistance. Conclusions: The redox cycling activity of cellular [Fe–S]‐proteins may oxidize TBHQ, potentially leading to the generation of bactericidal reactive oxygen species. Significance and Impact of the Study: A mechanism is proposed for the enhanced lethality of UHP by TBHQ against E. coli O157:H7. The results may benefit food processors using UHP–based preservation, and biologists interested in piezophilic micro‐organisms.     

Unraveling the structure of squids’ spermatophores: a combined approach based on Doryteuthis plei (Blainville, 1823) (Cephalopoda: Loliginidae)

Marian, J.E.A.R. and Domaneschi, O. 2012. Unraveling the structure of squids’ spermatophores: a combined approach based on Doryteuthis plei (Blainville, 1823) (Cephalopoda: Loliginidae). —Acta Zoologica (Stockholm) 93 : 281–307. Male coleoid cephalopods produce elaborate spermatophores, which function autonomously outside the male body during copulation, undergoing a complicated process of evagination. In order to contribute to the understanding of this unique structure, this study investigated the morphology of the spermatophore of Doryteuthis plei applying several microscopy techniques. A hitherto unreported, much more complex structural arrangement was revealed for the loliginid spermatophore, the most striking findings being: (1) the complex, layered structure of the middle membrane, which bears an additional, chemically distinct segment surrounding part of the cement body; (2) the presence of a space between the inner tunic and middle membrane filled with a fine reticulated material; (3) the presence of stellate particles not only embedded in the spiral filament, but also closely applied to the inner membrane at the level of the cement body; (4) the presence of a pre‐oral chamber in the cap region; and (5) the complex organization of the cement body, formed by two distinct layers encompassing contents of different chemical and textural properties. Careful literature reassessment suggests several of these features are common to loliginids, and to some extent to other squids. Their possible functional implications are discussed in light of our knowledge of the spermatophoric reaction mechanics.     

An invasion revisited: the African big-headed ant (<Emphasis Type="Italic">Pheidole megacephala</Emphasis>) in northern Australia

Long-term studies provide the best information for invasion ecology as multi-temporal sampling can illuminate invasion dynamics, such as population changes and rate of spread. In 1996, Hoffmann et al. surveyed an infestation of African big-headed ant, Pheidole megacephala, in semi-natural rainforest of northern Australia. Here, we re-survey this infestation 9 years later to assess the dynamics of this invasion against the key finding of the initial study. Importantly, we re-sample a site sampled prior to invasion to demonstrate the causal link between an infestation and changes in a native invertebrate community. We found the area infested had almost doubled, and P. megacephala biomass in infested sites was up to 18 times greater than that of native ants in uninfested sites. In the two sites with the youngest infestations in 1996, P. megacephala abundance had increased more than 20-fold than that measured in 1996. Native ant abundance and species richness in infested sites were notably lower in 2005, with only one native ant specimen found in the most recently infested site. The abundance of other macro-invertebrates was the lowest in the three oldest infested sites. Coleoptera and Orthoptera were less abundant in infested sites. This study supports the findings of the first ‘snapshot’ study, and has shown that the area infested has almost doubled, populations are increasing, and ecological impacts remain severe. It reinforces that P. megacephala represents a serious ecological threat, and we argue that there is a greater need for management of this ant globally.     

The effects of pitfall trap diameter on ant species richness (Hymenoptera: Formicidae) and species composition of the catch in a semi-arid eucalypt woodland

Abstract Ants play an important role in Australian biodiversity and environmental impact assessments, with pitfall-trapping being the principal sampling method. However, the relationship between trap diameter and ant species catch has not been investigated in the context of survey design. Using four different trap diameters, each at a density of one trap per 100 m2, the present study asks three questions: (i) given an equal number of traps, do traps with larger diameters catch more species than smaller-diameter traps?; (ii) do traps with small diameters bias against large or rare species?; (iii) for equal area of the trap mouth, do small but more numerous traps catch more species than fewer but large traps? A total of 84 species were sampled within the 1600 m2 study site, with numbers of species for trap diameters of: 18mm (46 species), 42mm (56 species), 86mm (62 species) and 135mm (64 species). At equal trap density, 18 mm traps caught significantly fewer species than larger traps. Traps of 86 mm and 135mm were no more efficient than 42mm traps. Only 86mm and 135mm traps caught all species > 10mm in length (6 species). For equal area of the trap mouth, small traps were more efficient than large traps. Differences in the catch of the different-sized traps were due primarily to different capture rates of the rare species (40 species): 18mm traps caught 25% of rare species, 42 mm caught 41%, 86 mm caught 44% and 135 mm caught 52%. The role of rare ant species in environmental impact studies is discussed.     

Functional design and evolution of the pharyngeal jaw apparatus in euteleostean fishes

Functional and structural patterns in the pharyngeal jaw apparatus of euteleostean fishes are described and analysed as a case study of the transformation of a complex biological design. The sequential acquisition of structural novelties in the pharyngeal apparatus is considered in relation to both current hypotheses of euteleostean phylogeny and patterns of pharyngeal jaw function. Several euteleostean clades are corroborated as being monophyletic, and morphologically conservative features of the pharyngeal jaw apparatus are recognized. Functional analysis, using cinematography and electromyography, reveals four distinct patterns of muscle activity during feeding in primitive euteleosts (Esox) and in derived euteleostean fishes(Perca, Micropterus, Ambloplites, Pomoxis). The initial strike, buccal manipulation, pharyngeal manipulation, and the pharyngeal transport of prey into the oesophagus all involve unique muscle activity patterns that must be distinguished in analyses of pharyngeal jaw function. During pharyngeal transport, the upper and lower pharyngeal jaws are simultaneously protracted and retracted by the action of dorsal and ventral musculoskeletal gill arch couplings. The levator externus four and retractor dorsalis muscles, anatomical antagonists, overlap for 70–90°of their activity period. Levatores externi one and two are the main protractors of the upper pharyngeal jaws in the acanthopterygian fishes studied. The major features of pharyngeal jaw movement in primitive euteleosts are retained in many derived clades in spite of a dramatic structural reorganization of the pharyngeal region. Homologous muscles have radically changed their relative activity periods while pharyngeal jaw kinematics have been modified relatively little. Patterns of transformation of activity may thus bear little direct relationship to the sequence of structural modification in the evolution of complex designs. Overall function of a structural system may be maintained, however, through co-ordinated modifications of the timing of muscle activity and anatomical reorientation of the musculoskeletal system. Deeper understanding of the principles underlying the origin and transformation of functional design in vertebrates awaits further information on the acquisition of both structural and functional novelties at successive hierarchical levels within monophyietic clades. This is suggested as a key goal of future research in functional and evolutionary morphology.     

Reaction mechanism of the binuclear zinc enzyme glyoxalase II - A theoretical study

The glyoxalase system catalyzes the conversion of toxic methylglyoxal to nontoxic d-lactic acid using glutathione (GSH) as a coenzyme. Glyoxalase II (GlxII) is a binuclear Zn enzyme that catalyzes the second step of this conversion, namely the hydrolysis of S-d-lactoylglutathione, which is the product of the Glyoxalase I (GlxI) reaction. In this paper we use density functional theory method to investigate the reaction mechanism of GlxII. A model of the active site is constructed on the basis of the X-ray crystal structure of the native enzyme. Stationary points along the reaction pathway are optimized and the potential energy surface for the reaction is calculated. The calculations give strong support to the previously proposed mechanism. It is found that the bridging hydroxide is capable of performing nucleophilic attack at the substrate carbonyl to form a tetrahedral intermediate. This step is followed by a proton transfer from the bridging oxygen to Asp58 and finally C-S bond cleavage. The roles of the two zinc ions in the reaction mechanism are analyzed. Zn2 is found to stabilize the charge of tetrahedral intermediate thereby lowering the barrier for the nucleophilic attack, while Zn1 stabilizes the charge of the thiolate product, thereby facilitating the C-S bond cleavage. Finally, the energies involved in the product release and active-site regeneration are estimated and a new possible mechanism is suggested.     

Flight tone of field‐collected populations of Anopheles gambiae and An. arabiensis (Diptera: Culicidae)

Abstract.Laboratory colonies of the human malaria vectors Anopheles gambiae Giles and An. arabiensis Patton have distinct flight tones. If flight tone similarly distinguishes natural populations of these sympatric sibling species, it may play a role in reproductive isolation of swarms that are otherwise behaviourally identical. To assess the fidelity of flight tone differences in natural populations, flight tone was measured in the F1 progeny of mosquitoes of both species captured in western Kenya. Flight tone distributions of wild An . gambiae and An. arabiensis were similar to their laboratory conspecifics. However, interspecies comparisons of flight tone of wild mosquitoes revealed significantly different but overlapping distributions for both sexes. Furthermore, when the effect of body size on flight tone was determined, there was a positive correlation between wing length and flight tone for both sexes of An. gambiae and An. arabiensis , suggesting that mosquito size is a significant variable affecting flight tone. Although these findings diminish any practical benefit of flight tone as a diagnostic tool in species identification, its potential role in pre‐mating species recognition needs further investigation.     

Management of <Emphasis Type="Italic">Tetranychus urticae</Emphasis> (Acari: Tetranychidae) in strawberry fields with <Emphasis Type="Italic">Neoseiulus californicus</Emphasis> (Acari: Phytoseiidae) and acaricides

The purpose of this study was to evaluate the performance of Neoseiulus californicus (McGregor) for the control of Tetranychus urticae Koch in commercial strawberry fields, under greenhouse conditions, in association or not with the use of acaricides. The N. californicus strain used in this study was tolerant or resistant to several pesticides. Three experiments were carried out in the State of São Paulo, Brazil. For the first experiment, the initial infestation of T. urticae was 87.1 active stages per leaflet. Two applications of propargite were made on the first and the 14th day of the experiment. Approximately 2 h after each propargite application, N. californicus was released at a rate of 3.0 and 1.9 adult mites per plant, respectively, for each application. The population of T. urticae decreased from 87.1 to 2.8 mites per leaflet in the first three weeks. After this period, the population of T. urticae was maintained at low levels (≤1.5 mites/leaflet) until the end of the experiment (10th week). Propargite and dimethoate sprayed on the strawberry field did not affect significantly the population of this predaceous mite. For the second experiment, the infestation of T. urticae was 29.1 mites per leaflet, when the acaricide chorfenapyr was applied on the strawberry field. The release of N. californicus (2 mites per plant) was made 2 weeks after spraying the acaricide. The population of T. urticae was maintained at low levels (≤2.8 mites/leaflet) for 8 weeks (evaluation period). The T. urticae infestations in plots with N. californicus were significantly lower than in non-release plots, for the experiments 1 and 2. In the third experiment, the initial infestation of T. urticae was 40.5 mites per leaflet (55.5 active stages/leaflet on release plants; 25.5 active stages/leaflet on non-release plants). Three releases of N. californicus (average rate of 3.0 adult mites/plant), without any acaricide application, were not sufficient to reduce significantly the T. urticae population in release plots (release plants + non-release plants) in 6 weeks from the first release, however, the spider mite population decreased from 55.5 to 7.8 active stages per leaflet on release plants, during this period. Interplant dispersal of N. californicus was low in this strawberry field with high infestation of T. urticae. The studies indicate the viability of the use of this strain of N. californicus for the control of T. urticae in strawberry fields under greenhouse conditions, especially in association with selective acaricides.     

The reversible inhibition of carbonic anhydrase II: Computer simulations of a proposed mechanism of action

A mechanism of action for carbonic anhydrase II involving a rate-limiting intramolecular proton transfer, originally proposed by Steineret al., has been reexamined totally in steady state form using a digital computer. It is found that the mechanism is sufficient to account for all of the extant kinetic data, including the participation of external buffer as a second substrate in the hydration/dehydration reaction. The model of Steineret al. has been expanded to include the inhibitory effects of monovalent anions, phenol, and Cu(II) ion, and is able to account for the experimentally observed kinetics within a chemically reasonable framework. It is concluded that the proposed mechanism is a good working model for carbonic anhydrase II catalysis, and its ability to reconcile such a wide body of kinetic data solidifies the notion of a rate-limiting intramolecular proton transfer in the catalytic pathway.