Long-term reproductive impairment in a seabird after the Prestige oil spill

Large oil spills are dramatic perturbations on marine ecosystems, and seabirds are one of the worst affected organisms in such events. It has been argued that oil spills may have important long-term consequences on marine organisms, but supporting evidence remains scarce. The European shag (Phalacrocorax aristotelis) was strongly impacted at population level by the Prestige oil spill, the biggest spillage in the eastern North Atlantic. In this paper, we report on the long-term consequences on reproduction of this coastal seabird, using temporal and spatial replicated data (before–after–control–impact design). Our study revealed long-term reproductive impairment during at least the first 10 years since the Prestige oil spill. Annual reproductive success did not differ before the impact, but after the impact it was reduced by 45% in oiled colonies compared with unoiled ones. This is a rare documentation of long-term effects after a major oil spill, highlighting the need for long-term monitoring in order to assess the real impact of this type of disturbance on marine organisms.     

Does the non‐native European catfish Silurus glanis threaten French river fish populations?

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Experimental wood addition in streams: effects on organic matter storage and breakdown

1. Channel complexity affects the physical structure, biotic communities and functioning of stream ecosystems. Large wood (LW) is a key element in the creation and maintenance of physically complex stream channels in forested areas. 2. In an attempt to enhance stream habitat quality and ecosystem functioning and to reduce inputs of organic matter to a downstream reservoir, LW was experimentally introduced into four mountain streams in the Basque Country (northern Spain), ranging in channel width from 3 to 13 m. Following a before–after/control–impact (BACI) design, streams were monitored during 1 year prior to wood addition and during 2 years after addition in one control and one experimental reach per stream. 3. Areal cover of benthic organic matter in the entire channel was measured from regular transects and the mass of stored organic matter from random Surber samples. Breakdown of organic matter was assessed in litter bag experiments performed with black alder leaves. When 50% of the initial mass in the bags remained, invertebrates associated with leaf bags were collected. 4. Wood placement produced a 2‐ to 70‐fold increase in the storage of organic matter, especially in thick deposits upstream from wood jams, with values in excess of 2 kg AFDM per m² in the small streams. The accumulation of organic matter produced by wood introduction decreased with increasing stream size. 5. Despite the large increase in the availability of organic matter, litter breakdown rates were unaffected by the experimental reaches, suggesting large increases in the total amount of organic matter consumed at the reach scale. 6. Numbers of invertebrates and shredders per gram of leaf litter did not respond to wood addition. Average body mass of invertebrates associated with leaf litter showed a non‐significant decreasing trend, which might reflect increased recruitment. 7. Although the effects of wood addition can depend on wood stability and stream size, adding LW to restore channel complexity can improve environmental conditions for invertebrate communities and affect stream ecosystem functioning, enhancing the efficiency to use organic matter inputs on a reach scale.     

A before–after control–impact assessment to understand the potential impacts of highway construction noise and activity on an endangered songbird

Anthropogenic noise associated with highway construction and operation can have individual‐ and population‐level consequences for wildlife (e.g., reduced densities, decreased reproductive success, behavioral changes). We used a before–after control–impact study design to examine the potential impacts of highway construction and traffic noise on endangered golden‐cheeked warblers (Setophaga chrysoparia; hereafter warbler) in urban Texas. We mapped and monitored warbler territories before (2009–2011), during (2012–2013), and after (2014) highway construction at three study sites: a treatment site exposed to highway construction and traffic noise, a control site exposed only to traffic noise, and a second control site exposed to neither highway construction or traffic noise. We measured noise levels at varying distances from the highway at sites exposed to construction and traffic noise. We examined how highway construction and traffic noise influenced warbler territory density, territory placement, productivity, and song characteristics. In addition, we conducted a playback experiment within study sites to evaluate acute behavioral responses to highway construction noises. Noise decreased with increasing distance from the highways. However, noise did not differ between the construction and traffic noise sites or across time. Warbler territory density increased over time at all study sites, and we found no differences in warbler territory placement, productivity, behavior, or song characteristics that we can attribute to highway construction or traffic noise. As such, we found no evidence to suggest that highway construction or traffic noise had a negative effect on warblers during our study. Because human population growth will require recurring improvements to transportation infrastructure, understanding wildlife responses to anthropogenic noise associated with the construction and operation of roads is essential for effective management and recovery of prioritized species.     

Factors influencing biomass and nutrient content of the submersed macrophyte Egeria densa Planch. in a pampasic stream

We identified factors influencing biomass and nutrient content in E. densa in an enriched pampean stream of Argentina. Physical (current velocity, temperature), chemical (pH, conductivity, dissolved oxygen, nutrient content in water and sediments), and biological variables (biomass and nutrient content of E. densa, biomass of periphyton and other macrophytes) were estimated at each sampling occasion, and mean monthly values estimated. Biomass and nutrient content in E. densa were correlated with these physical-chemical and biological variables. Biomass was positively correlated with ammonium in stream water (P<0.05) and sediment total nitrogen (P<0.01). Nitrogen showed a positive relationship with ammonium (P<0.01), and a negative one with nitrate and periphyton biomass (P<0.05). Phosphorus was positively correlated with soluble reactive phosphorus (P<0.01). The growth of other macrophyte species in the stream seemed to influence E. densa biomass, probably through competition for light. Current velocity was low and not significantly related with E. densa biomass, however, a flood at the beginning of the study washed the macrophyte stand downstream.     

Increased growth rates of stream salamanders following forest harvesting

Timber harvesting can influence headwater streams by altering stream productivity, with cascading effects on the food web and predators within, including stream salamanders. Although studies have examined shifts in salamander occupancy or abundance following timber harvest, few examine sublethal effects such as changes in growth and demography. To examine the effect of upland harvesting on growth of the stream‐associated Ouachita dusky salamander (Desmognathus brimleyorum), we used capture–mark–recapture over three years at three headwater streams embedded in intensely managed pine forests in west‐central Arkansas. The pine stands surrounding two of the streams were harvested, with retention of a 14‐ and 21‐m‐wide forested stream buffer on each side of the stream, whereas the third stream was an unharvested control. At the two treatment sites, measurements of newly metamorphosed salamanders were on average 4.0 and 5.7 mm larger post‐harvest compared with pre‐harvest. We next assessed the influence of timber harvest on growth of post‐metamorphic salamanders with a hierarchical von Bertalanffy growth model that included an effect of harvest on growth rate. Using measurements from 839 individual D. brimleyorum recaptured between 1 and 6 times (total captures, n = 1229), we found growth rates to be 40% higher post‐harvest. Our study is among the first to examine responses of individual stream salamanders to timber harvesting, and we discuss mechanisms that may be responsible for observed shifts in growth. Our results suggest timber harvest that includes retention of a riparian buffer (i.e., streamside management zone) may have short‐term positive effects on juvenile stream salamander growth, potentially offsetting negative sublethal effects associated with harvest.     

Soil and greenhouse gas responses to biochar additions in a temperate hardwood forest

Biochar additions can improve soil fertility and sequester carbon, but biochar effects have been investigated primarily in agricultural systems. Biochar from spruce and maple sawdust feedstocks (with and without inorganic phosphorus in a factorial design) were added to plots in a commercially managed temperate hardwood forest stand in central Ontario, Canada; treatments were applied as a top‐dressing immediately prior to fall leaf abscission in September 2011. Forests in this region have acidic, sandy soils, and due to nitrogen deposition may exhibit phosphorus, calcium, and magnesium limitation. To investigate short‐term impacts of biochar application on soil nutrient supply and greenhouse gas fluxes as compared to phosphorus fertilization, data were collected over the first year after treatment application; linear mixed models were used to analyze data. Two to six weeks after treatment application, there were higher concentrations of potassium in spruce and maple biochar plots, and phosphorus in spruce biochar plots, as compared to the control treatment. There were higher concentrations of calcium, magnesium, and phosphorus in the phosphorus plots. In the following spring and summer (9–12 months after treatment application), there were higher soil calcium concentrations in maple biochar plots, and phosphorus plots still had higher soil phosphorus concentrations than control plots. No treatment effects on fluxes of carbon dioxide, methane, or nitrous oxide were detected in the field; however, laboratory incubations after 12 months showed higher microbial respiration in soils from maple biochar plots as compared to spruce biochar, despite no effect on microbial biomass. The results suggest that the most important short‐term impact of biochar additions in this system is the increased supply of the limiting plant nutrients phosphorus and calcium. We expect that larger changes in mineral soil physical and chemical properties will occur when the surface‐applied biochar becomes incorporated into the soil after a few years.     

Bacteria and algae in stream periphyton along a nutrient gradient

1. Stream riffles in southern Ontario and western Quèbec were sampled for biomass (58 stations from 51 streams) and production (22 stations from 21 streams) of algae and bacteria in periphyton to test the hypothesis that bacteria in benthic biofilms compete with algae for nutrients. 2. Algal and bacterial biomass were positively correlated, as were algal and bacterial production. Bacterial production was also positively correlated to algal and bacterial biomass, but the relationship was not significant. The ratio of algal to bacterial biomass did not vary with nutrients whereas algal production tended to increase with nutrients more rapidly than bacterial production. 3. Instream nitrogen concentrations explained 38–58% of the variability in algal biomass and production. Bacterial abundance explained an additional 9–29% of the residual variance in algal production and biomass. However, the relationship between bacterial abundance and algal production and biomass, once nutrients were taken into account, was positive, in contrast to the predicted effect of competition. 4. Hence, we reject our original hypothesis that bacteria in biofilms compete with algae for nutrients and instead suggest that bacteria and algae in biofilms coexist in an association that offers space and resources to sustain production of both groups of organisms.     

Effects of nutrient enrichment and leaf quality on the breakdown of leaves in a hardwater stream

1. The breakdown of leaf litter in streams is influenced strongly by leaf quality and the concentration of dissolved nutrients, primarily inorganic nitrogen (N) and phosphorus (P) in the water. We examined the effect of nutrient enrichment on the breakdown of three species of leaves in a hardwater, nutrient‐rich stream. The rate of microbial respiration was also measured on the decomposing leaves. 2. The breakdown rates of dogwood (Cornus stolonifera), aspen (Populus tremuloides) and birch (Betula occidentalis), k‐values of 0.0461, 0.0307 and 0.0186 day^–1, respectively, were unaffected by nutrient enrichment and generally faster than reported previously. Microbial respiration on the leaves was greater than reported previously for leaves of congeneric species. It appears that leaf breakdown in the study stream was not nutrient limited. 3. Nitrogen‐based measures of leaf quality, such as percentage N and carbon (C)/nitrogen ratio, did not correspond to measured breakdown rates among the three leaf types. The best predictors of relative breakdown rates were percentage lignin and the percentage of the total carbon that occurred as lignin. We suggest that, when leaf breakdown is not nutrient limited, measures of carbon quality (i.e. lignin‐based measures) are a better assessment of overall leaf quality than are N‐based measures. 4. Previous studies have indicated that the enzymes produced by aquatic hyphomycetes (microfungi) operate most efficiently at a basic pH and in the presence of calcium ions. The hardwater conditions (pH=8.6, total hardness > 300 mg CaCO₃ L^–1) and abundance of dissolved NO₃ and soluble reactive phosphorous (SRP) (approximately 50 μg L^–1, each) in the study stream appear to have provided conditions that resulted in a high respiration rate and rapid breakdown of leaf litter.     

Periphyton community responses to elevated metal concentrations in a Rocky Mountain stream

The effects of elevated metals on stream periphyton in the Eagle River, a mining impacted river in central Colorado, were assessed in 1991 and 1992 using assemblage information (taxa richness, community similarity) and non-taxonomic measures (biomass, chlorophyll a, autotrophic index). The number of periphyton genera collected ranged from 2 at a site adjacent to abandoned mining operations to 21 at a downstream site, but was not significantly correlated with dissolved metals concentrations. Fragilaria and Achnanthes were the dominant genera at all sites, with Fragilaria dominating the less impacted sites and Achnanthesdominating at the more impacted sites. Taxonomic similarity was greatest among those sites receiving the greatest inputs of metals from mining operations, where the coefficient of similarity ranged from 0.87 to 0.99. Cluster analyses revealed significant differences among sites adjacent to the mine and either the upstream or downstream sites. Chlorophyll a content of periphyton and the autotrophic index in both years showed significant downstream decreases associated with increasing dissolved metals concentrations. Overall, the periphyton community data were able to separate metal contaminated sites from reference or less impacted sites, and responded in predictable ways to increasing metal concentrations of Eagle River water.     

Analyzing large‐scale conservation interventions with Bayesian hierarchical models: a case study of supplementing threatened Pacific salmon

Myriad human activities increasingly threaten the existence of many species. A variety of conservation interventions such as habitat restoration, protected areas, and captive breeding have been used to prevent extinctions. Evaluating the effectiveness of these interventions requires appropriate statistical methods, given the quantity and quality of available data. Historically, analysis of variance has been used with some form of predetermined before‐after control‐impact design to estimate the effects of large‐scale experiments or conservation interventions. However, ad hoc retrospective study designs or the presence of random effects at multiple scales may preclude the use of these tools. We evaluated the effects of a large‐scale supplementation program on the density of adult Chinook salmon Oncorhynchus tshawytscha from the Snake River basin in the northwestern United States currently listed under the U.S. Endangered Species Act. We analyzed 43 years of data from 22 populations, accounting for random effects across time and space using a form of Bayesian hierarchical time‐series model common in analyses of financial markets. We found that varying degrees of supplementation over a period of 25 years increased the density of natural‐origin adults, on average, by 0–8% relative to nonsupplementation years. Thirty‐nine of the 43 year effects were at least two times larger in magnitude than the mean supplementation effect, suggesting common environmental variables play a more important role in driving interannual variability in adult density. Additional residual variation in density varied considerably across the region, but there was no systematic difference between supplemented and reference populations. Our results demonstrate the power of hierarchical Bayesian models to detect the diffuse effects of management interventions and to quantitatively describe the variability of intervention success. Nevertheless, our study could not address whether ecological factors (e.g., competition) were more important than genetic considerations (e.g., inbreeding depression) in determining the response to supplementation.     

Effects of short-term nutrient addition on microfauna density in a Mediterranean stream

We performed a stream fertilisation experiment in an oligotrophic, forested, undisturbed stream by increasing nitrogen and phosphorus concentrations. The effect of nutrient loading on microfauna was studied over 6 months. A before after control impact (BACI) design was used to determine the outcome of the addition by comparing three upstream non-enriched reaches with an enriched one downstream. Ciliates such as Hymenostomata (Frontonia, Lembadion, Paramecium, Cyclidium) and Pleurostomatida (Litonotus) showed a positive response to fertilisation. No significant changes were detected for flagellates and testate amoebae. Mean density values observed (0.2–3×10³ ind cm⁻²) were compared with those found in literature.     

Changes in forest bird abundance,community structure and composition following a hurricane in Sweden

The effect that extreme natural events have on biological diversity is relatively poorly known. We used a before–after control‐impact (BACI) design to analyze changes in bird abundances and communities following Hurricane Gudrun, which struck southern Sweden in January 2005, felling 75 million m³ of forest and causing damage to 5% of forested areas (half a million hectares) in a few hours. We used recent measures of impact in combination with classical BACI contrasts to analyze bird count data from a monitoring program in Sweden. We investigated changes in the abundance of 17 species commonly found in forests, along with changes in species composition and functional structure of the bird community. In total, we considered 34 response variables and examined whether responses were immediate or long‐term. There was no evidence of a strong effect of the hurricane on the abundances of six species. Estimates of the effects on five species were too uncertain to draw inferences. We detected positive and negative effects of the hurricane on the abundances of the remaining six species, but the magnitude of effects often was small. Generally, the effects were in the expected direction: negative on birds associated with mature forest and positive on birds associated with open land or young forest. We found evidence of an increase in the proportion of species that nest on the ground and a decrease in the proportion of species that nest in cavities and trees. In contrast, the hurricane had no discernible effect on functional measures of diversity (richness, evenness or divergence), or on communities’ reproductive or morphological characteristics. Our results suggest that the hurricane affected bird populations and communities, but the magnitude of effects was generally small.     

Measurement of nutrient spiralling during a period of continuous surface flow in a Mediterranean temporary stream (Arroyo de La Montesina, Spain)

Uptake rate of calcium, potassium, nitrate-N and phosphorus were measured in a second order Mediterranean temporary stream, in February and March 1992. This study analyzed a period of continuous surface flow between two hydrologic disturbance events (flood and drought) of an annual hydrological cycle (1991–92).The lowest values of uptake length were recorded for nitrate-N in February 92 and calcium in March 92. Nitrate had the highest uptake rate in both release performances, and potassium showed the lowest uptake rate values. The increase of calcium and nitrate uptake rate between February 92 and March 92 suggested a higher ecosystem efficiency in nutrient retention with a higher temperature and light intensity and slower water velocity, discharge and water depth. These results obtained were similar to those reported in permanent streams, indicating that in periods of continuous surface flow (without extreme hydrologic disturbance), abiotic factors can influence nutrient retention in temporary streams.     

Effects of nutrient additions on litter production and nutrient return in a nutrient-poor Cape fynbos ecosystem

Litter production and N and P return were determined at bimonthly intervals for two years in 10×5 m plots, amended with a complete factorial fertilizer addition of N as NH₄NO₃(N_a), P as Ca₃(PO₄)₂(P_a) and a mixture of all essential nutrients excluding N and P (M_a) in a 4–7-year-old post-fire sand-plain lowland fynbos ecosystem, South Africa. Litter production increased with vegetation age, was highly seasonal and peaked from late spring to mid-summer (November to January). No significant differences in annual litter production and N return were found in response to the nutrient treatments, although both tended to increase during the second year in response to N_a and M_a. Phosphorus return increased significantly with P_a, and to a lesser extend, N₃, during the first year, whereas it increased in response to N_a and M_a and decreased in the P_a amended plots during the second year. The nutrient treatments did not result in a change in the timing of the annual peak litter production period or in the plant growth form composition of the litter. The litter layer dry mass and N and P contents increased in response to N_a and M_a, while P_a resulted in an increased P content. The evidence from this study indicates that the vegetative growth of the evergreen sclerophyllous shrubs and hemicryptophytes of sand-plain lowland fynbos is not only limited by N, as shown by other studies on shoot growth and vegetation cover, but also by one or more other nutrients excluding P.     

Hierarchy,spatial configuration,and nutrient cycling in a desert stream

Abstract Recent studies of nutrient cycling in Sycamore Creek in Arizona, USA, suggest that a thorough understanding requires a spatially explicit, hierarchical approach. Physical configuration determines the path that water follows as it moves downstream. Water follows flowpaths through surface stream components, the hyporheic zone beneath the surface stream, and the parafluvial (sand bar) zone. Characteristic biogeochemical processes in these subsystems alter nitrogen (N) species in transport, in part as a function of available concentrations of N species. At several hierarchical levels, substrate materials are an important determinant of nitrogen dynamics in desert streams. Sand is present in bars of variable size and shape, each of which can be considered a unit, interacting with the surface stream. Groups of these stream-sandbar units form a higher level, the reach. At the next higher scale, sandy reaches (runs) alternate with riffles. Where flowpaths converge, rates of N transformation are high and, as a result, change in concentration is a non-linear function of flowpath length. Disturbance by flash floods alters sandbar configuration. Between floods, the interaction of subsurface and surface flowpaths shapes configuration in each, thus a self-organizing element of spatial structure exists. Sandy runs are dominated by subsurface processes and are likely to be net nitrifiers while riffles are dominated by surface flow and are nitrogen fixers. Whether a stream ecosystem retains nitrogen, or transports it to downstream recipient systems, or is a net emitter of gaseous forms of N, depends upon the dynamics of a spatial mosaic of interacting elements. An understanding of the net effect of this mosaic requires a spatially explicit, hierarchical, multi-scale approach.     

Organic matter availability structures microbial biomass and activity in a Mediterranean stream

1. We compared microbial biomass (bacteria, fungi, algae) and the activity of extracellular enzymes used in the decomposition of organic matter (OM) among different benthic substrata (leaves, coarse and fine substrata) over one hydrological year in a Mediterranean stream.
2. Microbial heterotrophic biomass (bacteria plus fungi) was generally higher than autotrophic biomass (algae), except during short periods of high light availability in the spring and winter. During these periods, sources of OM shifted towards autochthonous sources derived mainly from algae, which was demonstrated by high algal biomass and peptidase activity in benthic communities.
3. Heterotrophic activity peaked in the autumn. Bacterial and fungal biomass increased with the decomposition of cellulose and hemicellulose compounds from leaf material. Later, lignin decomposition was stimulated in fine (sand, gravel) and coarse (rocks, boulders and cobbles) substrata by the accumulation of fine detritus.
4. The Mediterranean summer drought provoked an earlier leaf fall. The resumption of the water flow caused the weathering of riparian soils and subsequently a large increase in dissolved organic carbon and nitrate, which led to growth of bacteria and fungi.     

Simulating root responses to grazing of a Mongolian grassland ecosystem

A new Sim-CYCLE grazing model has been obtained by combining a grazing model (Seligman et al. 1992, Ecol. Model. 60: 45–61) with the Sim-CYCLE model (Ito and Oikawa 2002, Ecol. Model. 151: 143–176). The new model has been validated against a set of field data obtained at Kherlen Bayaan-Ulaan (KBU) grassland. On the basis of the model, the root responses to grazing of KBU grassland have been studied under different conditions of stocking rates and precipitation. Model results indicate that both below-ground biomass (BB) and below-ground net primary production (BNPP) generally decrease with increasing stocking rate. However, if stocking rate is not higher than 0.7 sheep ha⁻¹, a sustainable state of the grassland ecosystem can be achieved after about 100 years, which suggests that the maximum sustainable stocking rate at KBU should be 0.7 sheep ha⁻¹. At the sustainable state, the maximum BB in a year is about 11 Mg DM ha⁻¹ under non-grazing condition, 5 Mg DM ha⁻¹ under 0.4 sheep ha⁻¹ stocking rate, and 4 Mg DM ha⁻¹ under 0.7 sheep ha⁻¹ stocking rate; the BNPP is 1.3 Mg DM ha⁻¹ year⁻¹ under non-grazing condition, and 0.6 Mg DM ha⁻¹ year⁻¹ under 0.4 sheep ha⁻¹ stocking rate, and 0.4 Mg DM ha⁻¹ year⁻¹ under 0.7 sheep ha⁻¹ stocking rate. Ratio of non-assimilation organ to assimilation organ (C/F) increases with increasing stocking rate. The C/F ratio is 10.99 under non-grazing conditions, and 12.11 under 0.7 sheep ha⁻¹ stocking rate. Root turnover rate decreases with increasing stocking rate. The rate is 12% each year under non-grazing conditions, and 11% each year under 0.7 sheep ha⁻¹ stocking rate. In addition, the effect of grazing on the grassland ecosystem under different scenarios of precipitation is also analyzed. Both BB and BNPP increase with increased precipitation, and vice versa. When precipitation is set to be 10% higher than the averaged from 1993 to 2002, the maximum sustainable stocking rate is 0.8 sheep ha⁻¹, and when the precipitation is set to be 15% lower than the averaged, the maximum sustainable stocking rate is 0.6 sheep ha⁻¹.