Climate change and faunal dynamics in the uttermost part of the earth

To use the ‘lessons of the Pleistocene’ to forecast the biotic effects of climate change, we must parse the effects of history and ecology in the Quaternary record. The preponderance of Northern Hemisphere studies of biotic responses to climate change provides a limited set of players and environmental circumstances with which to decouple these drivers. In this issue Lessa et al. (2010) examine population structure in 14 species of mice distributed across Patagonia and Tierra del Fuego in southern South America. In the Southern Cone, glacial ice was alpine, not polar; major habitats were (and are) oriented N–S, not E–W; and habitable land area actually increased, not decreased, at the height of the last glacial maximum (LGM). Despite these differences, there is evidence for poleward demographic expansion in 10 of the 14 species, and phylogeographic breaks in these are likewise stepped by latitude (and presumably history) rather than by biome. Nevertheless, high latitude endemism and the antiquity of these lineages point to an extended presence in the region that very likely predates the Pleistocene.     

Pacific-wide contrast highlights resistance of reef calcifiers to ocean acidification

Ocean acidification (OA) and its associated decline in calcium carbonate saturation states is one of the major threats that tropical coral reefs face this century. Previous studies of the effect of OA on coral reef calcifiers have described a wide variety of outcomes for studies using comparable partial pressure of CO₂ (pCO₂) ranges, suggesting that key questions remain unresolved. One unresolved hypothesis posits that heterogeneity in the response of reef calcifiers to high pCO₂ is a result of regional-scale variation in the responses to OA. To test this hypothesis, we incubated two coral taxa (Pocillopora damicornis and massive Porites) and two calcified algae (Porolithon onkodes and Halimeda macroloba) under 400, 700 and 1000 μatm pCO₂ levels in experiments in Moorea (French Polynesia), Hawaii (USA) and Okinawa (Japan), where environmental conditions differ. Both corals and H. macroloba were insensitive to OA at all three locations, while the effects of OA on P. onkodes were location-specific. In Moorea and Hawaii, calcification of P. onkodes was depressed by high pCO₂, but for specimens in Okinawa, there was no effect of OA. Using a study of large geographical scale, we show that resistance to OA of some reef species is a constitutive character expressed across the Pacific.     

Inferring weak population structure with the assistance of sample group information

Genetic clustering algorithms require a certain amount of data to produce informative results. In the common situation that individuals are sampled at several locations, we show how sample group information can be used to achieve better results when the amount of data is limited. New models are developed for the structure program, both for the cases of admixture and no admixture. These models work by modifying the prior distribution for each individual's population assignment. The new prior distributions allow the proportion of individuals assigned to a particular cluster to vary by location. The models are tested on simulated data, and illustrated using microsatellite data from the CEPH Human Genome Diversity Panel. We demonstrate that the new models allow structure to be detected at lower levels of divergence, or with less data, than the original structure models or principal components methods, and that they are not biased towards detecting structure when it is not present. These models are implemented in a new version of structure which is freely available online at http://pritch.bsd.uchicago.edu/structure.html.     

A genetic affinity analysis of human populations

Genetic affinity of human populations based on allele frequency data was studied from two viewpoints. (1) The effect of the number of polymorphic loci on the reconstruction of a phylogenetic tree of human populations was empirically investigated. Genetic affinity trees were constructed based on data for 1–12 polymorphic loci, by using the neighbor-joining method. Geographical clustering of populations gradually appeared when the number of loci was increased. A new classification and terminology of higher order human population clusters is proposed based on these and other studies. (2) A new method of estimating the absolute divergence time of two populations is proposed, which is based on a diffusion equation that describes random genetic drift.     

The enigmatic,deep‐sea,organic‐walled genera Chitinosiphon,Nodellum and Resigella (Protista,Foraminifera): A taxonomic re‐evaluation

Abstract

Using a morphology‐based approach, we explore the relationships between three poorly understood species of organic‐walled Foraminifera. Thalmann and Bermudez (1954) described Chitinosiphon rufescens as the type species of a new monotypic genus which they compared to the tubular agglutinated foraminiferan Bathysiphon. Loeblich and Tappan (1964), however, considered C. rufescens to be identical to Reophax membranacea Brady 1879, type species of another organic‐walled genus, Nodellum. Based on a re‐examination of the type specimens of both species, new material of C. rufescens from the Lost City hydrothermal field, and new material of N. membranacea from the NE Atlantic and Pacific Oceans, we show that these two deep‐sea species are distinguished by the following features. (1) Chitinosiphon rufescens lacks the distinct, regular constrictions that divide the tubular test of N. membranacea into a series of segments. (2) The proloculus is spindle‐shaped in C. rufescens but sub‐cylindrical in N. membranacea. (3) A distinctive, pocket‐like invagination is developed at the base (proximal end) of the proloculus in N. membranacea but not in C. rufescens. However, a series of undescribed species which occur in deep‐sea sediments blur the distinction between the two genera. We therefore adopt a conservative position and regard Chitinosiphon as a junior synonym of Nodellum. We also examined the holotype and new material of Nodellum moniliforme Resig, 1982, the type species of Resigella Loeblich and Tappan, 1984, in which the organic‐walled test comprises a series of bulbous chambers. This species exhibits a basal invagination, identical to the feature present in Nodellum membranacea. These three remarkable species are united by the basically tubular test and the nature of the test wall which is largely organic, brownish in colour, and exhibits no internal structure when broken sections are examined by SEM. The surface of the organic test of Nodellum rufescens from Lost City is strewn with tiny (≤1μm), needle‐shaped mineral particles, visible only by SEM. More equidimensional, micron‐sized particles are present in the other two species. We agree with Thalmann and Bermudez (1954) that N. rufescens is related to tubular agglutinated taxa such as Bathysiphon. Resigella may have similar affinities, although this needs to be tested using molecular approaches.     

Is Anisakis simplex s.l. a biological marker for stock identification of Strangomera bentincki from Chile?

The absence of the larval Anisakis simplex s. l. in samples from central Chile but heavy infections in fish from southern localities suggest the existence of two stocks of Strangomera bentincki, one closely associated with the central coast of Chile (landing port San Antonio and Talcahuano, c. 33° 30′ S–36° 40′ S) and the other associated with southern Chile (landing port Puerto Montt, c. 41° 30′ S). Results confirm the usefulness of metazoan parasites, like A. simplex s. l. as biological markers.     

On the dispersal of leatherback turtle hatchlings from Mesoamerican nesting beaches

So little is known about the early life history of leatherback turtles (Dermochelys coriacea) from hatchling to adulthood that this period has been termed the 'lost years'. For critically endangered eastern Pacific leatherback populations, continued and rapid declines underscore the urgent need to develop conservation strategies across all life stages. We investigate leatherback hatchling dispersal from four Mesoamerican nesting beaches using passive tracer experiments within a regional ocean modelling system. The evolution of tracer distribution from each of the nesting beaches showed the strong influence of eddy transport and coastal currents. Modelled hatchlings from Playa Grande, Costa Rica, were most likely to be entrained and transported offshore by large-scale eddies coincident with the peak leatherback nesting and hatchling emergence period. These eddies potentially serve as 'hatchling highways', providing a means of rapid offshore transport away from predation and a productive refuge within which newly hatched turtles can develop. We hypothesize that the most important leatherback nesting beach remaining in the eastern Pacific (Playa Grande) has been evolutionarily selected as an optimal nesting site owing to favourable ocean currents that enhance hatchling survival.