A new species of Pomatoschistus (Teleostei,Gobiidae): the Mediterranean's smallest marine fish

The new sand goby species Pomatoschistus nanus (Teleostei: Gobiidae) is described from the northern coast of the Levantine Sea (eastern Mediterranean Sea) based on both morphological and DNA barcoding data. The new species is the smallest fish in the Mediterranean Sea and may be distinguished from congeners by the following features: predorsal area, first dorsal‐fin base and breast naked; δ‐pore missing; anterior point of the suborbital row b not reaching level of posterior point of suborbital row d; slightly emarginated caudal fin and nape coloration pattern. DNA barcode data clearly discriminate Pomatoschistus spp. in the neighbour‐joining tree with an average of 17·7% interspecific K2P distance. The most closely related taxon to P. nanus sp. nov. is Pomatoschistus bathi and the most distantly related is Pomatoschistus tortonesei with 11·9 and 21·9% K2P distances respectively. Morphometric and genetic data are also provided for Pomatoschistus bathi.     

A new species of Pomatoschistus (Teleostei: Gobiidae) from Southern Anatolia

Pomatoschistus anatoliae sp. n. is described from estuary of Göksu River on the Mediterranean coast of the Anatolia. It is distinguished from its congeners by the suborbital papilla pattern, meristic, and ecological features. DNA barcoding based on COI sequences revealed that there is a high nucleotide sequence divergence to the nearest neighbour. Kimura’s two parameter distances between P. anatoliae sp. n. and other species of Pomatoschistus and Knipowitchia have found to be at least 5.1%.

http://www.zoobank.org/urn:lsid:zoobank.org:pub:4592CF50-07B5-4C25-892F-5D009057675B     

Species distributions: virtual or real – the case of Arbaciella elegans (Echinoidea: Arbaciidae)

The distribution of species is expressed by their occurrence in local faunal lists often compiled by non‐taxonomists. In the case of rare or cryptic species, this can pose a severe limitation on the validity and thus the application of the resulting biodiversity data. Here, we show an example of a shallow‐water echinoid to illustrate problematic distribution data based on misidentification. This species, Arbaciella elegans, was established on the basis of Central African material and later reported from various places in the Mediterranean and the Northern Atlantic. Morphological comparison with the type material casts considerable doubt on the validity of these records. Genetical characterization of material from the Azores clearly shows that the dark Arbaciella phenotype reported to the Mediterranean and north‐east Atlantic in fact represents juveniles of another species, namely Arbacia lixula.     

The Tyrosinase Gene in Gorillas and the Albinism of ‘Snowflake’

The sequence of the tyrosinase (Tyr) gene coding tracts has been obtained for the gorilla (Gorilla gorilla gorilla). The five exons of the gene were sequenced in three gorillas and in a normally pigmented human. The tyrosinase gene has been found to be a very conserved locus with a very low substitution rate. Some nucleotide and amino acid differences were found between the gorilla and human tyrosinase coding sequences. One of the gorillas included in the study is the only known case of albinism in a gorilla (‘Snowflake’). Mutations of the TYR gene lead to Oculocutaneous Albinism type 1 (OCA1), the most common type of albinism in humans (OMIM accession number 203100). The TYR gene encodes the tyrosinase enzyme (E.C. 1.14.18.1), whose activity was found to be completely lacking in ‘Snowflake’, indicating that a mutation in the Tyr gene is the likely cause of his albinism. Nonetheless, no nucleotide changes were detected that could account for the lack of Tyr product or tyrosinase activity in Snowflake, and explanations of these findings are discussed.     

Marine island biogeography. Response to comment on ‘Island biogeography: patterns of marine shallow‐water organisms’

In this response we have incorporated data on gastropod and seaweed biodiversity referred to by Ávila et al. (2016, Journal of Biogeography, doi: 10.1111/jbi.12816 ) to allow an updated analysis on marine shallow‐water biogeography patterns. When compared to the biogeography patterns reported in Hachich et al. (2015, Journal of Biogeography, 42 , 1871–1882), we find (1) no differences in the patterns originally reported for reef fish or seaweeds, (2) minor differences in gastropod species–area and species–age patterns and (3) a significant difference for the gastropod species‐isolation pattern. In our original work, we reported that there was limited evidence that gastropod species richness was influenced by island isolation; however, our new analysis reveals a power‐model relationship between these variables. Thus, we are now able to conclude that gastropod species diversity, whose dispersal capacity is intermediate between seaweeds (lowest) and reef fish (highest), is also influenced by island isolation.     

Speciation and host-parasite relationships in the parasite genus Gyrodactylus (Monogenea, Platyhelminthes) infecting gobies of the genus Pomatoschistus (Gobiidae, Teleostei)

Using species-level phylogenies, the speciation mode of Gyrodactylus species infecting a single host genus was evaluated. Eighteen Gyrodactylus species were collected from gobies of the genus Pomatoschistus and sympatric fish species across the distribution range of the hosts. The V4 region of the ssrRNA and the internal transcribed spacers encompassing the 5.8S rRNA gene were sequenced; by including published sequences a total of 30 species representing all subgenera were used in the data analyses. The molecular phylogeny did not support the morphological groupings into subgenera as based on the excretory system, suggesting that the genus needs systematic revisions. Paraphyly of the total Gyrodactylus fauna of the gobies indicates that at least two independent colonisation events were involved, giving rise to two separate groups, belonging to the subgenus Mesonephrotus and Paranephrotus, respectively. The most recent association probably originated from a host switching event from Gyrodactylus arcuatus, which parasitises three-spined stickleback, onto Pomatoschistus gobies. These species are highly host-specific and form a monophyletic group, two possible ‘signatures’ of co-speciation. Host specificity was lower in the second group. The colonising capacity of these species is illustrated by a host jump from gobiids to another fish order (Anguilliformes), supporting the hypothesis of a European origin of Gyrodactylus anguillae and its intercontinental introduction by the eel trade. Thus, allopatric speciation seems to be the dominant mode of speciation in this host–parasite system, with a possible case of sympatric speciation.     

‘Fish’ (Actinopterygii and Elasmobranchii) diversification patterns through deep time

Actinopterygii (ray‐finned fishes) and Elasmobranchii (sharks, skates and rays) represent more than half of today's vertebrate taxic diversity (approximately 33000 species) and form the largest component of vertebrate diversity in extant aquatic ecosystems. Yet, patterns of ‘fish’ evolutionary history remain insufficiently understood and previous studies generally treated each group independently mainly because of their contrasting fossil record composition and corresponding sampling strategies. Because direct reading of palaeodiversity curves is affected by several biases affecting the fossil record, analytical approaches are needed to correct for these biases. In this review, we propose a comprehensive analysis based on comparison of large data sets related to competing phylogenies (including all Recent and fossil taxa) and the fossil record for both groups during the Mesozoic–Cainozoic interval. This approach provides information on the ‘fish’ fossil record quality and on the corrected ‘fish’ deep‐time phylogenetic palaeodiversity signals, with special emphasis on diversification events. Because taxonomic information is preserved after analytical treatment, identified palaeodiversity events are considered both quantitatively and qualitatively and put within corresponding palaeoenvironmental and biological settings. Results indicate a better fossil record quality for elasmobranchs due to their microfossil‐like fossil distribution and their very low diversity in freshwater systems, whereas freshwater actinopterygians are diverse in this realm with lower preservation potential. Several important diversification events are identified at familial and generic levels for elasmobranchs, and marine and freshwater actinopterygians, namely in the Early–Middle Jurassic (elasmobranchs), Late Jurassic (actinopterygians), Early Cretaceous (elasmobranchs, freshwater actinopterygians), Cenomanian (all groups) and the Paleocene–Eocene interval (all groups), the latter two representing the two most exceptional radiations among vertebrates. For each of these events along with the Cretaceous‐Paleogene extinction, we provide an in‐depth review of the taxa involved and factors that may have influenced the diversity patterns observed. Among these, palaeotemperatures, sea‐levels, ocean circulation and productivity as well as continent fragmentation and environment heterogeneity (reef environments) are parameters that largely impacted on ‘fish’ evolutionary history, along with other biotic constraints.     

On the mechanism of sperm release in three gobiid fishes (Teleostei: Gobiidae)

Synopsis In fish, gamete release is commonly assumed to be synchronous in externally inseminating fishes. By collecting and counting the number of sperm and eggs released during separate matings in three demersal spawners, the mediterranean gobies, Zosterisessor ophiocephalus, Gobius niger, and Knipowitschia panizzae, we observed that gametes are released asynchronously. Males release sperm before females start laying their eggs. Sperm is released in the form of sperm trails laid on the nest surface; subsequently active spermatozoa leave the trails and move in the water for several minutes. Sperm trails consist of bands of viscous material in which sperm is embedded. In most cases eggs are not laid directly over the sperm trail, suggesting that sperm may contact the eggs after the latter are released in the water. Male sperm duct glands, seminal vesicles, known to secrete mucosubstances, are likely involved in the production of sperm trails. The possible influence of this mode of insemination on the mating style of marine gobies is discussed.     

Identification of gobies (Teleostei: Perciformes: Gobiidae) from the North and Baltic Seas combining morphological analysis and DNA barcoding

Gobies are difficult to identify, as they are very similar in appearance. Here, we identified (sub)adult specimens of 12 goby species from the North Sea and the Baltic Sea by carefully analysing meristic characters, coloration patterns, papillae row patterns and morphometric measurements. The results of the morphological identifications were congruent with those obtained with the analysis of COI DNA barcodes; sequences from morphological conspecific specimens were clustered together in clades with bootstrap values ≥ 99%. Mean intra‐ and interspecific distance (uncorrected p) was 0.37 and 18.97%, respectively. A gap between the maximum intraspecific distance and the distance to the nearest neighbour was apparent in every species and ranged from 2.35 to 16.11%. The Barcode Index Number (BIN) analysis performed on the Barcode of Life Data Systems (BOLD) web platform, assigned the DNA barcodes to 12 separate clusters corresponding to sequence‐ and morphology‐based identification. In 25% of the investigated species, the BIN clusters showed taxonomic discordances, as they contained sequences assigned to more than one species. This result demonstrates the importance of accurate morphological species identification at the beginning of the barcoding pipeline. © 2014 The Linnean Society of London     

Determining the ‘health’ of estuaries: Priorities for ecological research

‘Ecosystem health’ is a relatively new concept for environmental science and management. Although at least two international journals use the term in their titles, there have been few applications of it for estuaries and soft-sediment habitats around the world. In this paper I: (i) introduce the ideas behind ecosystem health, and assess their relation with other usage such as ‘integrity’ or ‘quality’; (ii) sketch the sorts of multidisciplinary studies that could contribute to an assessment of health of an estuary and how these must be approached in developing useful indicators; and (iii) make a case for including measurements of the rates of ecological processes in such an assessment. These rate measurements, termed ‘ecoassays’, focus on important processes such as decomposition, recruitment, predator–prey interactions, and the like. A case study is introduced wherein these processes were assessed in mangrove stands of estuaries around Sydney, New South Wales, by explicitly comparing the rates of herbivory and decomposition of mangrove leaves, attack of fallen wood by shipworms, and colonization of pneumatophores by algae, as well as with more traditional estimates of ‘standing stocks’. Not surprisingly, the different measures retrieved various patterns and the challenge now is to integrate these into a scheme that indicates something of value. The potential utility of such measures is discussed in relation to the various scientific and managerial requirements of environmental monitoring.     

Molecular phylogeny and biogeography of African diploid barbs, ‘Barbus’, and allies in Africa and Asia (Teleostei: Cypriniformes)

African diploid barbs (‘Barbus’, Clypeobarbus, Barboides, etc.) are a group of small cyprinids with a body size less than 20 cm and widely distributed in drainages across Africa. These species constitute a significant component of African freshwater fish fauna. This study is the first to focus on the molecular systematics and biogeography of African diploid barbs ‘Barbus’ and its African and Asian allies using both mitochondrial and nuclear genes. We test for monophyly of groups, determine interspecific relationships and estimate the time of divergence of 52 species of ‘Barbus’ and allies using two mitochondrial and four nuclear genes. Resulting trees demonstrate that ‘Barbus’ and allies (Systomus, Barboides, Clypeobarbus and African tetraploid barbs) form a strongly supported clade; however, ‘Barbus’ is not resolved as monophyletic. Divergence time analyses identify the separation between Systomus and ‘Barbus’ plus African allies may have occurred around 26 MYA. In addition to the phylogenetic results, these findings highlight the need for more thorough taxonomic and systematic studies on ‘Barbus’ and allies using morphological and additional molecular data and greater taxon sampling, including the type species of the genus Enteromius, ‘Barbus’ potamogalis.     

Old views and new insights: taxonomic revision of the Bukovina blind mole rat,Spalax graecus (Rodentia: Spalacinae)

As a result of their rather uniform external appearance and gross cranial morphology, the systematics of blind mole rats has been hotly debated over the last century; however, the separation of the large‐bodied and small‐bodied blind mole rats at the genus level (Spalax and Nannospalax, respectively), suggested earlier on morphological grounds, is strongly supported by recent molecular biological evidence. The species of Spalax have so far been distinguished from each other by cranial traits only, especially the outline of sutures of the cranium, and the shape and relative size of the nasal and parietal bones. Based on mitochondrial DNA sequences (with the widest taxonomic and geographic coverage so far) and detailed anatomical comparisons of museum specimens, we herewith provide a revision of the taxonomic and phylogenetic status of the westernmost representative of the genus, Spalax graecus s.l. We clarify that antiquus and istricus – presently regarded as synonyms of graecus – are well‐defined species, and they together form a separate clade within Spalax. The robustness of our conclusions is supported by the combined evidence of morphology, multilocus phylogeny, species distribution, and taxon history (species congruence with past tectonic and climate events). © 2013 The Linnean Society of London     

Phylogeny and revision of the ‘Cubitermes complex’ termites (Termitidae: Cubitermitinae)

The phylogeny of the genus Cubitermes Wasmann was reconstructed using two mitochondrial genes (COI and COII) and a fragment of the nuclear 28S rDNA, including samples of Apilitermes Holmgren, Crenetermes Silvestri, Megagnathotermes Silvestri and Thoracotermes Wasmann. Based on our analyses, we recovered these genera within a paraphyletic Cubitermes clade. Cubitermes species are distributed between five main clades, highly reflective of their enteric valve armatures (EVAs). Consequently, Cubitermes is here divided into five monophyletic genera based on phylogenetic analyses and EVAs: Cubitermes (sensu stricto), Isognathotermes Sjöstedt, Nitiditermes Emerson, Polyspathotermes Josens & Deligne, gen.n. , and Ternicubitermes Josens & Deligne, gen.n. Moreover, the two species of Megagnathotermes included in this study, exhibiting different EVAs, are phylogenetically distant: M. katangensis Sjöstedt belongs in the genus Polyspathotermes, while M. notandus Silvestri remains as a monotypic genus. During the evolution of the Cubitermes complex, sclerotized EVA spatulae appeared twice independently: three or six spatulae in Polyspathotermes (sulcifrons and oblectatus patterns) and two jaw‐like spatulae in Nitiditermes (sankurensis pattern), which is absent in some species (oculatus pattern). Zoobank registration: http://zoobank.org/urn:lsid:zoobank.org:pub:576AAFF8‐63C6‐4962‐A8F5‐75C9317AEA7B .     

Expected future reproductive success and paternal behaviour in the sand goby, Pomatoschistus minutus (Pisces, Gobiidae)

We studied egg care and guarding behaviour in the paternal sand goby, Pomatoschislus minutus , in relation to egg number and age. A male's expected reproductive success is assumed to increase with larger egg masses and older eggs. Non-shareable care, i.e. fanning, was higher in larger and older egg masses. Egg age explained 65% and egg mass size 22% of the total variation in the amount of fanning performed by a male. Contrary to expectation, egg removal did not affect a male's fanning behaviour, Males that were approached stayed longer in the nest when they guarded larger egg masses. Males with older eggs were also more reluctant to leave the nest. The time since a male had been chased away from his nest until he returned decreased as the season progressed. The results are discussed in relation to tradeoffs between present and future reproductive events.     

Age determination in Pomatoschistus mi nut us (Pallas) and Pomatoschistus microps (Kreyer) (Pisces: Gobiidae) from the upper Tagus estuary, Portugal

The use of scale inspection as a means of age-determination in Pomatoschistus microps and Pomatoschistus minutus in the Tagus estuary is confirmed, but annulus formation pattern is different from that described for P. microps in the area of the British Isles (Miller, 1975). In Britain, two annuli are laid down on the scales each year, but in the Tagus, only one annulus is formed. One possible reason for this difference is the fact that in the Tagus the peak breeding season and the lowest water temperatures coincide. Therefore, the two causes of annulus formation coexist at the same time of year.
Population structure in both species is dominated by the 0-group, which appears earlier (April/May) than reported for other areas. Maximum age seems not to exceed 26 months in P. microps and 32 months in P. minutus .     

Patterns of diversification in two species of short‐tailed bats (Carollia Gray, 1838): the effects of historical fragmentation of Brazilian rainforests

The small‐sized frugivorous bat Carollia perspicillata is an understory specialist and occurs in a wide range of lowland habitats, tending to be more common in tropical dry or moist forests of South and Central America. Its sister species, Carollia brevicauda, occurs almost exclusively in the Amazon rainforest. A recent phylogeographic study proposed a hypothesis of origin and subsequent diversification for C. perspicillata along the Atlantic coastal forest of Brazil. Additionally, it also found two allopatric clades for C. brevicauda separated by the Amazon Basin. We used cytochrome b gene sequences and a more extensive sampling to test hypotheses related to the origin and diversification of C. perspicillata plus C. brevicauda clade in South America. The results obtained indicate that there are two sympatric evolutionary lineages within each species. In C. perspicillata, one lineage is limited to the Southern Atlantic Forest, whereas the other is widely distributed. Coalescent analysis points to a simultaneous origin for C. perspicillata and C. brevicauda, although no place for the diversification of each species can be firmly suggested. The phylogeographic pattern shown by C. perspicillata is also congruent with the Pleistocene refugia hypothesis as a likely vicariant phenomenon shaping the present distribution of its intraspecific lineages. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2011, 102 , 527–539.     

Ecophysiological function of leaf ‘windows’ in Lithops species – ‘Living Stones’ that grow underground

Leaf temperatures were lower when light entry at the leaf tip window was prevented through covering the window with reflective tape, relative to leaf temperatures of plants with leaf tip windows covered with transparent tape. This was true when leaf temperatures were measured with an infrared thermometer, but not with a fine‐wire thermocouple. Leaf tip windows of Lithops growing in high‐rainfall regions of southern Africa were larger than the windows of plants (numerous individuals of 17 species) growing in areas with less rainfall and, thus, more annual insolation. The results of this study indicate that leaf tip windows of desert plants with an underground growth habit can allow entry of supra‐optimal levels of radiant energy, thus most likely inhibiting photosynthetic activity. Consequently, the size of the leaf tip windows correlates inversely with habitat solar irradiance, minimising the probability of photoinhibition, while maximising the absorption of irradiance in cloudy, high‐rainfall regions.