A Ser–Gly substitution in plastid-encoded photosystem II D1 protein is responsible for atrazine resistance in foxtail millet (<Emphasis Type="Italic">Setaria italica</Emphasis>)

A foxtail millet (Setaria italica L. Beauv.) line resistant to atrazine was obtained through interspecific hybridization between wild S. viridis L. Beauv. and cultivated S. italica. The resistance was proved to be controlled by a chloroplast-inherited gene and it has further been utilized in foxtail millet production. However, the sequence information of the putative atrazine resistance gene, psbA in foxtail millet’s chloroplast genome encoding photosystem II D1 protein (32 kDa thylakoid membrane protein) (photosystem Q_B protein) and the mutation site responsible for the resistance are not known. In this paper the psbA sequences of six atrazine susceptible/resistant foxtail millet varieties were obtained and compared. The results indicated that there was only one amino acid difference between susceptible and resistance gene, resulting from a single base substitution. It was concluded that a mutant allele of photosystem II protein D1 encoding a Gly residue instead of a Ser residue at position 264 is a major gene of resistance to atrazine. Moreover, the phylogenetic tree based on the psbA coding region of thirty-five plant species was carried out. The phylogenetic relationship between S. italica and other plants and the related evolutionary issues were discussed and it was suggested that psbA sequences could be used in phylogenetic studies in plants. Xiaoping Jia and Jincheng Yuan have equal contribution.     

Genetic analysis of two new mutations resulting in herbicide resistance in the cyanobacterium Synechcoccus sp. PCC 7002

Two herbicide-resistant strains of the cyanobacterium Synechococcus sp. PCC 7002 are compared to the wild-type with respect to the DNA changes which result in herbicide resstance. The mutations have previously been mapped to a region of the cyanobacterial genome which encodes oneof three copies of psbA, the gene which encodes the 32 kDa Q_b-binding protein also known as D1 (Buzby et al. 1987). The DNA sequence of the wild-type gene was first determined and used as a comparison to that of the mutant alleles. A point mutation at codon 211 in the psbA1 coding locus (TTC) to TCC) results in an amino acid change from phenylalanine to serine in the D1 protein. This mutation confers resistance to atrazine and diuron at seven times and at two times the minimal inhibitory concentration (MIC) for the wild-type, respectively. A mutation at codon 211 resulting in herbicide resistance has not previously been described in the literature. A second point mutation at codon 219 in the psbA1 coding locus (GTA to ATA) results in an amino acid change from valine to isoleucine in the D1 protein. This mutation confers resistance to diuron and atrazine at ten times and at two times the MIC for the wild-type, respectively. An identical codon change conferring similar herbicide resistance patterns has previously been described in Chlamydomonas reinhardtii. The atrazine-resistance phenotype in Synechococcus sp. PCC 7002 was shown to be dominant by plasmid segregation analysis.Abbreviations At ^r atrazine resistance - Du ^r diuron resistance - Km ^r kanamycin resistance - Ap ^r ampicillin resistance - MIC Minimum inhibitory concentration     

皇竹草活性氧代谢对阿特拉津胁迫的响应特征

采用水培实验研究了4个浓度（5、10、20、40 mg·L^-1）除草剂阿特拉津胁迫下,皇竹草（Pennisetum hydridum）叶片内超氧阴离子生成速率、过氧化氢（H₂O₂）含量、超氧化物歧化酶（SOD）活性、过氧化氢酶（CAT）活性、过氧化物酶（POD）活性、丙二醛（MDA）含量、原生质膜透性的变化,探讨皇竹草对阿特拉津的抗性及其生理机制。结果显示:（1）低浓度（5、10 mg·L^-1）的阿特拉津胁迫使皇竹草叶片内超氧阴离子生成速率和CAT活性升高,却使H₂O₂含量及SOD和POD活性降低,但随着培养时间的延长,培养液中阿特拉津浓度的降低导致上述指标又有恢复到正常水平的趋势;而高浓度（40 mg·L^-1）的阿特拉津胁迫则使皇竹草叶片内H₂O₂含量、SOD、POD和CAT活性持续降低。（2）在各胁迫浓度下持续胁迫10 d后,皇竹草叶片内MDA含量开始逐渐升高,并且升高幅度随着胁迫浓度的提高而明显增加,但各胁迫浓度下叶片原生质膜相对透性未见明显的变化。研究表明,皇竹草可能通过活性氧等信号分子调控自身保护酶系统的活性来缓解阿特拉津造成的伤害,从而对低浓度（5、10 mg·L^-1）的阿特拉津胁迫表现出较强抗性。     

There large inversions in the chloroplast genomes and one loss of the chloroplast generps16 suggest an early evolutionary split in the genusAdonis (Ranunculaceae)

Detailed chloroplast DNA restriction site maps for two species in the genusAdonis (Ranunculaceae),A. annua andA. vernalis, were constructed using single and double digests and the sizes of these genomes are 151.3 and 156.5 kilobases, respectively. Three inversions were found inAdonis, relative to the gene order in the majority of land plants. These rearrangements represent two different gene orders and mark an ancient split in the evolutionary history of this genus. Gene probes were used in order to map the endpoints of the inversions and the inverted repeat regions. The inverted repeat is approximately 400 base pairs shorter inA. annua than inA. vernalis. Two inversions, 39 kilobases and 24 kilobases in size, occur inA. annua and one inversion, 42 kilobases in size, is present in the remaining investigated species ofAdonis. The generps16 is absent from the chloroplast genome inAdonis annua. Restriction sites for eleven restriction endonucleases were mapped forA. annua, A. vernalis and four additional species ofAdonis and two species ofTrollius. Eighty-six phylogenetically informative sites were analysed cladistically in order to evaluate the main clades withinAdonis.     

Combined metabolic activity within an atrazine-mineralizing community enriched from agrochemical factory soil

The main objective of this work was to characterize an atrazine-mineralizing community originating from agrochemical factory soil, especially to elucidate the catabolic pathway and individual metabolic and genetic potentials of culturable members. A stable four-member bacterial community, characterized by colony morphology and 16S rDNA sequencing, was rapidly able to mineralize atrazine to CO₂ and NH₃. Two primary organisms were identified as Arthrobacter species (ATZ1 and ATZ2) and two secondary organisms (CA1 and CA2) belonged to the genera Ochrobactrum and Pseudomonas, respectively. PCR assessment of atrazine-degrading genetic potential of the community, revealed the presence of trzN, trzD, atzB and atzC genes. Isolates ATZ1 and ATZ2 were capable of dechlorinating atrazine to hydroxyatrazine and contained the trzN gene. ATZ2 further degraded hydroxyatrazine to cyanuric acid and contained atzB and atzC genes whereas ATZ1 contained atzC but not atzB. Isolates CA1 and CA2 grew on cyanuric acid and contained the trzD gene. Complete atrazine degradation was a result of the combined metabolic attack on the atrazine molecule, and complex interactions may exist between the community members sharing carbon and nitrogen from atrazine mineralization.Scientific relevance: Despite numerous reports on atrazine degradation by pure bacterial cultures, the pathways and the atrazine-degrading gene combinations harboured by bacterial communities are only poorly described. In this work, we characterized a four-member atrazine-mineralizing community enriched from an agrochemical factory soil, which was capable of rapidly metabolizing atrazine to CO₂. This study will contribute towards better understanding of the genetic potential and metabolic activities of atrazine-degrading communities, which are generally considered to be responsible for atrazine mineralization in the natural environment.     

Biochemical characterization of metabolism‐based atrazine resistance in Amaranthus tuberculatus and identification of an expressed GST associated with resistance

Rapid detoxification of atrazine in naturally tolerant crops such as maize (Zea mays) and grain sorghum (Sorghum bicolor) results from glutathione S‐transferase (GST) activity. In previous research, two atrazine‐resistant waterhemp (Amaranthus tuberculatus) populations from Illinois, U.S.A. (designated ACR and MCR), displayed rapid formation of atrazine‐glutathione (GSH) conjugates, implicating elevated rates of metabolism as the resistance mechanism. Our main objective was to utilize protein purification combined with qualitative proteomics to investigate the hypothesis that enhanced atrazine detoxification, catalysed by distinct GSTs, confers resistance in ACR and MCR. Additionally, candidate AtuGST expression was analysed in an F₂ population segregating for atrazine resistance. ACR and MCR showed higher specific activities towards atrazine in partially purified ammonium sulphate and GSH affinity‐purified fractions compared to an atrazine‐sensitive population (WCS). One‐dimensional electrophoresis of these fractions displayed an approximate 26‐kDa band, typical of GST subunits. Several phi‐ and tau‐class GSTs were identified by LC‐MS/MS from each population, based on peptide similarity with GSTs from Arabidopsis. Elevated constitutive expression of one phi‐class GST, named AtuGSTF2, correlated strongly with atrazine resistance in ACR and MCR and segregating F₂ population. These results indicate that AtuGSTF2 may be linked to a metabolic mechanism that confers atrazine resistance in ACR and MCR.     

Salicylic acid activates artemisinin biosynthesis in <Emphasis Type="Italic">Artemisia annua</Emphasis> L.

This paper provides evidence that salicylic acid (SA) can activate artemisinin biosynthesis in Artemisia annua L. Exogenous application of SA to A. annua leaves was followed by a burst of reactive oxygen species (ROS) and the conversion of dihydroartemisinic acid into artemisinin. In the 24 h after application, SA application led to a gradual increase in the expression of the 3-hydroxy-3-methylglutaryl coenzyme A reductase (HMGR) gene and a temporary peak in the expression of the amorpha-4,11-diene synthase (ADS) gene. However, the expression of the farnesyl diphosphate synthase (FDS) gene and the cytochrome P450 monooxygenase (CYP71AV1) gene showed little change. At 96 h after SA (1.0 mM) treatment, the concentration of artemisinin, artemisinic acid and dihydroartemisinic acid were 54, 127 and 72% higher than that of the control, respectively. Taken together, these results suggest that SA induces artemisinin biosynthesis in at least two ways: by increasing the conversion of dihydroartemisinic acid into artemisinin caused by the burst of ROS, and by up-regulating the expression of genes involved in artemisinin biosynthesis.     

Ovipositional preferences and larval survival of annual bluegrass weevil,Listronotus maculicollis,on Poa annua and selected bentgrasses (Agrostis spp.)

The annual bluegrass weevil (ABW), Listronotus maculicollis Kirby (Coleoptera: Curculionidae), is a serious and expanding pest of short‐cut turfgrass on golf courses in eastern North America. Increasing problems with the development of insecticide resistance in this pest highlights the need for more sustainable management approaches. Plant resistance is one of the most promising alternative strategies. Bentgrasses are the dominant grass species on golf course fairways, tees, and putting greens in the areas affected by ABW. But Poa annua L. (Poaceae), a highly invasive weed, often constitutes a large percentage of turf stands in short‐mown golf courses and is thought to be particularly susceptible to ABW. We studied resistance to ABW in four cultivars of creeping bentgrass, Agrostis stolonifera L., and two cultivars each of colonial bentgrass, Agrostis capillaris L., and velvet bentgrass, Agrostis canina L. (Poaceae), in comparison with P. annua by addressing the three major components of resistance: antixenosis (adult ovipositional and feeding preferences), antibiosis (larval survival and growth), and grass tolerance (grass damage). Our findings suggest that antixenosis/non‐preference is at least partially involved in bentgrass resistance to ABW. Even though oviposition was observed in all tested grasses, females laid significantly fewer eggs in Agrostis spp. than in P. annua. Compared to P. annua, Agrostis spp. were also less suitable for larval development with lower numbers of ABW immatures recovered and larvae weighing less and being less advanced in development. Resistance levels to ABW larvae varied significantly among Agrostis spp. and cultivars. Agrostis canina was least preferred by females for oviposition and A. stolonifera was the least suitable for larval survival and development. Agrostis spp., especially A. stolonifera, were more tolerant to ABW feeding than P. annua. Our findings suggest that reduction in P. annua and replacement with Agrostis spp., especially A. stolonifera, wherever feasible should be integral to more sustainable approaches to ABW management.     

Isolation and characterization of Arthrobacter sp. strain MCM B-436, an atrazine-degrading bacterium, from rhizospheric soil

Atrazine is one of the most environmentally prevalent s-triazine-ring herbicides. The widespread use of atrazine and its toxicity necessitates search for remediation technology. As atrazine is still used in India as a major herbicide, exploration of atrazine-degrading bacterial community is of immense importance. Considering lack of reports on well characterized atrazine-degrading bacterial cultures from India and wide diversity and density of microorganisms in rhizosphere, soil sample from rhizosphere of atrazine-resistant plant was studied. Arthrobacter sp. strain isolated in this investigation utilizes atrazine as the sole nitrogen source. In addition, the bacterium degrades other triazines such as ametryn, cyanizine, propazine and simazine. PCR analysis confirms the presence of atzBCD and triazine hydrolase (trzN) genes on chromosomal DNA. Sequencing of the trzN gene reveals high sequence similarity with trzN from Nocardioides sp. C190. An inducible and intracellular atrazine chlorohydrolase enzyme was isolated and partially purified from this isolate. This study confirms the presence of atrazine-degrading microbial population in Indian soils and could be used efficiently for remediation of contaminated soils. Presence of trzN gene indicates possible presence of bacterial community with more efficient and novel enzymatic capabilities. Comparison of enzyme and gene structure of this isolate with other geographically distinct atrazine-degrading strains will help us in the better understanding of gene transfer and evolution.     

青蒿内生真菌分离、分子鉴定及深绿木霉对青蒿的促生作用研究

为从青蒿(Artemisia annua L.)内生真菌中筛选有促生作用的菌株,用组织分离法从青蒿侧枝中分离内生真菌并进行分子鉴定,对其中1株真菌深绿木霉对青蒿幼苗的促生作用进行了研究。结果表明,从青蒿侧枝中获得23株内生真菌,鉴定出16种,以炭疽菌属占优势。深绿木霉发酵液对青蒿种子发芽和幼苗生长具有显著抑制作用;深绿木霉液体发酵菌丝体在4-5月对青蒿幼苗生长具有显著的促进作用,但7月以后没有明显促进作用。因此,深绿木霉可作为青蒿苗肥,与化肥配合可施用于成株。     

Studies on the light-induced loss of the D1 protein in photosystem-II membrane fragments

PS II membrane fragments produced from higher plant thylakoids by Triton X-100 treatment exhibit strong photoinhibition and concomitant fast degradation of the D1 protein. Involvement of (molecular) oxygen is necessary for degradation of the D1 protein.The herbicides atrazine and diuron, but not ioxynil, partly protect the D1 protein against degradation. Binding of atrazine to the D1 protein is necessary to protect the D1 polypeptide, as shown with PS II membrane fragments from an atrazine-resistant biotype of Chenopodium album which are protected by diuron not by atrazine.Abbreviations atrazine 2-chloro-4-ethylamino-6-isopropylamino-1,3,5-triazine - Chl chlorophyll, diuron - (DCMU) 3-(3,4-dichlorophenyl)-1,1-dimethylurea - DMBQ 2,5-dimethyl-p-benzoquinone - DCIP 2,6-dichlorophenol indophenol - DPC diphenylcarbazide - ioxynil 4-cyano-2,6-diiodophenol - k_b binding constant - Mes 4-morpholinoethanesulfonic acid - P-680 reaction-center chlorophyll a of photosystem-II - PAGE polyacrylamide gel electrophoresis - PS II photosystem-II - Q_A and Q_B primary and secondary quinone electron acceptors - Z electron donor to the photosystem-II reaction center - SDS sodium dodecylsulfate - Tricine N-2-hydroxy-1,1-bis(hydroxymethyl)ethylglycine     

Atrazine Tolerance of Grass Species with Potential for Use in Vegetated Filters in Australia

The response of introduced (Pennisetum clandestinum Hochst.) and native (Stipa aristiglumis F. Muell., Themeda australis (R. Br.) Stapf, Danthonia spp. (L.) grasses to the herbicide atrazine was studied in plants with the potential for use in vegetated filters (biofilters) designed to reduce chemical loads in agricultural runoff. The response was detected by photosynthetic inhibition using leaf chlorophyll fluorescence. With continuous short-term (14 days) dosing with atrazine in sand culture, P. clandestinum showed the greatest tolerance, regardless of the dose (20–500 μg/L). In a clay vertosol soil in the glasshouse, the four species were tolerant to longer-term (84 days) application of three successive doses of simulated run-on, each dose containing 100 μg/L atrazine, a concentration which is comparable to the highest reported in runoff from agricultural land in Australia. Even with a subsequent single atrazine dose at ∼ ∼5000 μg/L, established plants of the four species showed signs of quick recovery (7–21 days) to normal photosynthetic activity. In a field experiment with simulated run-on, applied to P. clandestinum pasture in sandy loam soil, repeated doses at concentrations up to 1000 μg/L gave no significant response; only a subsequent single dose of 5000 μg/L had significant effects, from which plants soon recovered. Although damage from atrazine can be demonstrated with continuous dosing in non-adsorbing media, in soil culture the tolerance of the four selected species to repeat doses of atrazine shows they may be used confidently for biofiltering purposes. P. clandestinum was especially tolerant.     

黄花蒿与其近缘种化学成分的FTIR和GC-MS鉴定与分析

黄花蒿是一种治疗痢疾的特效中药,植物体中含有丰富的精油,但其应用和生产中常有种类混杂现象,严重影响了黄花蒿为原料的药材质量。为实现黄花蒿药材快速鉴定与评价,该研究利用FTIR技术和GCMS分别对黄花蒿及其近缘种叶片原药材及挥发油成分进行了检测和鉴定。结果表明:挥发油以黄花蒿含量最高(1.86%),其次是南牡蒿、茵陈蒿、青蒿、牡蒿和艾蒿。FTIR分析结果表明,黄花蒿及其近缘种一维图谱相似,酰胺类、芳香类以及萜类化合物种类较多且含量丰富;二阶导数图谱中,黄花蒿青蒿素成分振动吸收明显增强,可以明显将黄花蒿与其混淆中区分开。GC-MS分析显示,黄花蒿与其近缘种的挥发油成分中共检测出17个共有峰,28种化学成分,均含有较高樟脑、á-杜松烯、Crocetane、植烷、2,4-二叔丁基苯酚,但不同种间成分含量差异很大,植烷在黄花蒿中含量明显高于其它近缘种,龙脑成分只能在黄花蒿叶片中检测出,然而á-雪松烯在青蒿、南牡蒿、茵陈蒿均较高,而在黄花蒿,艾蒿,牡蒿中含量均较低。最后通过聚类分析探讨了黄花蒿与其近缘种挥发油成分差异性,6种材料明显聚为2类。其中,黄花蒿与牡蒿、艾蒿聚为一类,青蒿与茵陈蒿和南牡蒿聚为一类。该研究结果为黄花蒿药材的真伪鉴别及其药材质量评价提供了快速而有效的分析手段。     

Eight polymorphic microsatellite loci for the Chinese medicinal plant Artemisia annua L. (Asteraceae)

Artemisia annua is an important medicinal plant from which Artemisinin was extracted to cure malaria effectively. We developed eight microsatellite markers from the genome of A. annua using the FIASCO protocol. Polymorphism of each locus was assessed in 54 individuals from two Chinese populations. The average allele number of these microsatellites was 3.1 per locus, ranging from 2 to 6. The observed (H _O) and expected (H _E) heterozygosity were from 0.019 to 0.907 and from 0.055 to 0.793, respectively. These microsatellite markers would provide a useful tool for genetic studies of A. annua. H.-R. Huang and G. Zhou have contributed equally to this work.     

致病疫霉效应蛋白Pi16275的功能研究

[目的]分析致病疫霉效应蛋白Pi16275的超量表达对病原菌致病性的影响,明确Pi16275的亚细胞定位,筛选Pi16275在植物中的互作靶标蛋白及靶标蛋白在抵御病原菌侵染过程中的作用,初步揭示Pi16275在病原菌侵染植物过程中的作用机制.[方法]利用农杆菌介导的烟草瞬时表达系统在烟草叶片表皮细胞中瞬时表达Pi162...     

The presence of atrazine and atrazine-degrading bacteria in the residential, cattle farming, forested and golf course regions of Lake Oconee

Aims: To assess the concentration of atrazine in Lake Oconee and develop a qPCR assay as a potential marker for the presence of atrazine‐degrading bacteria indicating atrazine contamination. Methods and Results: Water and sediment samples were collected from the Oconee Lake at four golf course sites, two residential sites, one cattle farming site and a forested site. Atrazine concentration at the study sites was determined using an ELISA kit and indicated the presence of atrazine from 0·72 ppb at the forested sites to 1·84 ppb at the golf course sites. QPCR results indicate the presence of atzA gene (atrazine chlorohydrolase) from 1·51 × 10² gene copies at the residential sites to 3·31 × 10⁵ gene copies per 100 ml of water at the golf course regions of the lake and correlated (r = 0·64) with atrazine concentration. Sediment samples had higher atzA gene copies compared with the water samples (P < 0·05). Conclusions: Atrazine concentration and the highest quantity of atzA gene were detected in the golf course regions of the lake. Overall, atrazine concentration monitored in Lake Oconee was below the Environment Protection Agency (EPA) regulatory standards. Significance and Impact of the Study: Quantitative PCR is an efficient technique for assessing the presence of atrazine catabolism gene as a functional marker for atrazine‐degrading bacteria and the presence of atrazine contamination.     

Inheritance of resistance to the root-knot nematode Meloidogyne arenaria in Myrobalan plum

The inheritance of resistance of the self-incompatible Myrobalan plum Prunus cerasifera to the root-knot nematode Meloidogyne arenaria was studied using first a diallel cross between five parents of variable host suitability (including two highly resistant clones P.1079 and P.2175, a moderate host P.2032, a good host P.2646 and an excellent host P.16.5), followed by the G2 crosses P.16.5 × (P.2646 × P.1079) and P.2646 × (P.16.5 × P.1079). A total of 355 G1 and 72 G2 clones obtained from hard-wood cuttings sampled from trees in the field experimental design, then rooted in the nursery and inoculated individually in containers (5–10 replicates per clone) under greenhouse conditions, were evaluated for their host suitability based on a 0–5 gall-index rating under a high and durable inoculum pressure of the nematode. In the crosses involving the resistant P.1079 and P.2175 and the hosts P.2646 and P.16.5: (1) all of the G1 crosses of P.1079 were resistant while the G2 crosses segregated 1 resistant to 1 host, (2) the G1 crosses between P.2175 and either P.2646 or P.16.5 segregated 1 resistant to 1 host, and (3) all of the G1 progeny between P.2646 and P.16.5 were host. These results indicate that resistance is conferred by a single major dominant resistance gene (homozygous) in P.1079, and the same, or an allelic or a different, major dominant gene (heterozygous) in P.2175, and that P.2646 and P.16.5 are recessive for this (these) major resistance gene(s). As expected according to the hypothesis of a recessive genotype for P.2032, all of its hybrids with P.1079 were resistant, all of its hybrids with P.2646 and P.16.5 were host, and its hybrids with P.2175 segregated for resistance. Nevertheless, the 32 segregation ratio of these latter hybrids suggests that clones bearing the P.2175 gene would have a selective advantage. Both resistance genes are completely dominant and confer a non-host behaviour that totally prevents the multiplication of the nematode. This is the first reported evidence of major nematode resistance genes towards M. arenaria in a species of the subgenus Prunophora in the genus Prunus. The symbols Ma1 for the P.2175 gene and Ma2 for the P.1079 gene are proposed.     

Introduced plants on Kilimanjaro: tourism and its impact

Kilimanjaro, a world heritage site and an icon of global change, not only suffers from climatic alterations but also is undergoing a drastic socio-economic upheaval. A strong increase of tourism enhances the risk of introducing alien plant species in particular in the upper zones of Kilimanjaro. One such species is Poa annua L., a cosmopolitan weed of European origin on roadsides and pastures. The aim of this study is to document its distribution, the speed of its propagation and risks for the indigenous vegetation of Kilimanjaro, and to compare the findings with other introduced species on this mountain. Based on a complete survey of the vegetation of Kilimanjaro with about 1,500 vegetation plots, plant communities invaded by Poa annua are determined. As with most of the other neophytes on Kilimanjaro, Poa annua invades only anthropogenic vegetation but not undisturbed natural vegetation. Similar to the situation in middle Europe, this neophyte is on Kilimanjaro a constituent of the vegetation of trampled ground, occurring between about 1,600 and 4,000 m asl along climbing routes or their vicinity. On a newly opened climbing route a rapid invasion (5.6 km in 3 months) was observed, which makes it likely that Poa annua spread on Kilimanjaro during the last 30 years in parallel to the increase of the climbing tourism. Although Poa annua is still in the stage of propagation, an invasion of natural vegetation types seems to be unlikely.