Zooplankton Community Structure and Inter‐Annual Dynamics in Two Sand‐Pit Lakes with Different Dredging Impact

Zooplankton seasonal and inter‐annual dynamics were investigated in two neighbouring sand‐pit lakes with similar morphological features but different exploitation regime. We hypothesized that the dredging activities affected the zooplankton communities and the hydrochemical conditions of the studied lakes. Significant differences in zooplankton abundance were found. The analysis of similarity (ANOSIM) revealed that plankton communities were different between lakes and that the microcrustaceans largely contributed to the average dissimilarity. In particular, the lower densities of cladocerans and the presence of large‐size species in the lake still under dredging during this study appeared to be related to the resuspension of sand in the water column. We report how the zooplankton communities evolved toward an higher taxonomical and functional diversity after conclusion of the dredging activities. (© 2009 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Influence of an oyster reef on development of the microbial heterotrophic community of an estuarine biofilm

We characterized microbial biofilm communities developed over two very closely located but distinct benthic habitats in the Pensacola Bay estuary using two complementary cultivation-independent molecular techniques. Biofilms were grown for 7 days on glass slides held in racks 10 to 15 cm over an oyster reef and an adjacent muddy sand bottom. Total biomass and optical densities of dried biofilms showed dramatic differences for oyster reef versus non-oyster reef biofilms. This study assessed whether the observed spatial variation was reflected in the heterotrophic prokaryotic species composition. Genomic biofilm DNA from both locations was isolated and served as a template to amplify 16S rRNA genes with universal eubacterial primers. Fluorescently labeled PCR products were analyzed by terminal restriction fragment length polymorphism, creating a genetic fingerprint of the composition of the microbial communities. Unlabeled PCR products were cloned in order to construct a clone library of 16S rRNA genes. Amplified ribosomal DNA restriction analysis was used to screen and define ribotypes. Partial sequences from unique ribotypes were compared with existing database entries to identify species and to construct phylogenetic trees representative of community structures. A pronounced difference in species richness and evenness was observed at the two sites. The biofilm community structure from the oyster reef setting had greater evenness and species richness than the one from the muddy sand bottom. The vast majority of the bacteria in the oyster reef biofilm were related to members of the gamma- and delta-subdivisions of Proteobacteria, the Cytophaga-Flavobacterium -Bacteroides cluster, and the phyla Planctomyces and Holophaga-Acidobacterium. The same groups were also present in the biofilm harvested at the muddy sand bottom, with the difference that nearly half of the community consisted of representatives of the Planctomyces phylum. Total species richness was estimated to be 417 for the oyster reef and 60 for the muddy sand bottom, with 10.5% of the total unique species identified being shared between habitats. The results suggest dramatic differences in habitat-specific microbial diversity that have implications for overall microbial diversity within estuaries.     

Oaks, acorns, and the geographical ecology of acorn woodpeckers

We investigated the geographical ecology of acorn woodpeckers (Melanerpes formicivorus) using 30 years of Audubon Christmas Bird Counts and data on the diversity and abundance of oaks. Spatial autocorrelation in acorn woodpecker population densities is not significantly greater than zero both in either the southwestern United States, where populations are often locally isolated, or along the Pacific Coast, where they are more evenly distributed. In both regions, the effective distributional limit of acorn woodpeckers is set not by the limits of oaks but by sites where oak diversity drops to a single species. This result is consistent with acorn production patterns in central coastal California demonstrating that variability in overall acorn production and the probability of acorn crop failure decline with increasing oak species number but drop most markedly when two, compared to one, species of oaks are present together. Along the Pacific Coast, acorn woodpecker densities increase and population variability decreases with increasing abundance and diversity of oaks; however, analyses indicate that overall population size in this region is primarily determined by resource abundance while population stability is determined by resource diversity. Comparable patterns are not obvious in the Southwest, where acorn woodpecker densities are much lower than along the Pacific Coast. This may be due to a combination of greater competition for resources and oak communities that differ both qualitatively and quantitatively in their productivity compared to those along the Pacific Coast.     

Macrobenthos communities on reefs of the An Thoi archipelago of the South China Sea

Macrobenthos communities were studied on fringing reefs of the An Thoi Islands using scuba-diving techniques. The islands are located in the turbid and highly eutrophic waters of the eastern Gulf of Siam. We studied species composition and population densities and biomasses in common species of algae, coelenterates, mollusks, and echinoderms and also the degree of substrate coverage by macrophytes and corals. A pronounced vertical zonation is revealed in the spatial succession of different macrobenthos communities. The domination of massive porites in almost all reefs of the Gulf of Siam is due to their capability to survive under conditions that are stressful for many corals. They predominate over other scleractinians in terms of the productivity of organic matter, degree of substrate coverage, and species diversity. They also constitute the reef skeleton and play a significant role in the expansion of the reef area in the muddy bottoms of the Gulf of Siam.     

Long-term trends of subtidal macrobenthos in North Inlet,South Carolina

Analyses of seasonal and yearly trends in subtidal macrobenthic samples collected bi-weekly at a sandy site (1981–1984) and a muddy site (1981–1985) in North Inlet, South Carolina, show large fluctations in abundance and high variability between replicate samples. Sampling variability at the sandy site, thought to be influenced more by physical disturbance than by biotic interactions, was especially high and prevented the interpretation of seasonal trends in abundance. Increased replication at the muddy site in 1985 revealed abundance patterns of winter/spring maxima and summer minima. Despite short-term (seasonal) and high year-to-year variability, the fauna at both sites were characterized by long-term stability in abundance. That is, although abundances varied considerably between seasons or years only 9 of 22 taxa analyzed showed a directional change in abundance. These 9 taxa increased in abundance over the four (sandy site) or five (muddy site) years of examination while the other 13 taxa fluctuated about a mean value. The taxonomic composition of benthic fauna at both sites was also very stable through time, with the sandy site always numerically dominated, in order, by polychaetes, amphipods, and bivalves and the muddy site by polychaetes, oligochaetes, and bivalves.     

Seasonal strengths of the abiotic and biotic drivers of a zooplankton community

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Pleuston communities are buffered from regional flood pulses: the example of ostracods in the Paraná River floodplain, Brazil

1. It is widely acknowledged that sudden, large‐scale flood pulses are drivers of benthic and planktonic biodiversity change in floodplains. The impact of such pulses on pleuston (biotic communities associated with root systems of floating plants) remains to be demonstrated. Here, we investigate the effects of local and regional drivers on seasonal changes in abundance and diversity of ostracod communities in pleuston. 2. Temporal and spatial distribution patterns of species richness, abundance, diversity and evenness of ostracods associated with the floating water hyacinth, Eichhornia crassipes, in a lentic environment from the upper Paraná River floodplain, were investigated in relation to local, as well as regional, environmental factors. Ostracods were sampled monthly over an annual cycle (March 2004–February 2005). Twenty‐seven species were found, representing the families Cyprididae, Candonidae, Limnocytheridae and Darwinulidae. Both diversity and abundance of ostracod communities showed seasonal changes, although species turn‐over during the year was limited. 3. We tested two hypotheses concerning the causality of these fluctuations: seasonal recruitment and influx of allochthonous ostracods during the flood pulse. Our results indicate that seasonal recruitment is more likely to be the driver of fluctuations in relation to the flood pulse. We postulate that pleuston communities are buffered against possible detrimental effects of flood pulses.     

Construction of Sand Shinnery Oak Communities of the Llano Estacado: Animal Disturbances, Plant Community Structure, and Restoration

In land restoration it is imperative to study the potential role of disturbances, biotic or abiotic, that may provide sites for colonization by specific plants. Disturbances can alter community composition by removing species or allowing others to become established. In communities where animal-generated disturbances open sites for seedling establishment, animals may have important indirect effects on several aspects of plant community structure. Animal disturbances in Quercus havardii communities of western Texas appear to open sites for colonization by herbaceous species. These animal disturbances vary in spatial distribution, density, and abiotic and biotic characteristics. The abundance of herbaceous plant seedlings is positively related to bare ground and the number of distinct disturbances. Thus, the density and the spatial distribution of these disturbances may be expected to have an important influence on the abundance and dispersion of plant species. Therefore, successful restoration efforts of sand shinnery oak communities and other similar habitats must consider the effects of animal disturbances and the role of plant-animal and plant-soil microbe interactions on plant community composition and the maintenance of plant species diversity.     

Influence of an Oyster Reef on Development of the Microbial Heterotrophic Community of an Estuarine Biofilm

We characterized microbial biofilm communities developed over two very closely located but distinct benthic habitats in the Pensacola Bay estuary using two complementary cultivation-independent molecular techniques. Biofilms were grown for 7 days on glass slides held in racks 10 to 15 cm over an oyster reef and an adjacent muddy sand bottom. Total biomass and optical densities of dried biofilms showed dramatic differences for oyster reef versus non-oyster reef biofilms. This study assessed whether the observed spatial variation was reflected in the heterotrophic prokaryotic species composition. Genomic biofilm DNA from both locations was isolated and served as a template to amplify 16S rRNA genes with universal eubacterial primers. Fluorescently labeled PCR products were analyzed by terminal restriction fragment length polymorphism, creating a genetic fingerprint of the composition of the microbial communities. Unlabeled PCR products were cloned in order to construct a clone library of 16S rRNA genes. Amplified ribosomal DNA restriction analysis was used to screen and define ribotypes. Partial sequences from unique ribotypes were compared with existing database entries to identify species and to construct phylogenetic trees representative of community structures. A pronounced difference in species richness and evenness was observed at the two sites. The biofilm community structure from the oyster reef setting had greater evenness and species richness than the one from the muddy sand bottom. The vast majority of the bacteria in the oyster reef biofilm were related to members of the γ- and δ-subdivisions of Proteobacteria, the Cytophaga-Flavobacterium -Bacteroides cluster, and the phyla Planctomyces and Holophaga-Acidobacterium. The same groups were also present in the biofilm harvested at the muddy sand bottom, with the difference that nearly half of the community consisted of representatives of the Planctomyces phylum. Total species richness was estimated to be 417 for the oyster reef and 60 for the muddy sand bottom, with 10.5% of the total unique species identified being shared between habitats. The results suggest dramatic differences in habitat-specific microbial diversity that have implications for overall microbial diversity within estuaries.     

Spatial and seasonal patterns in freshwater ichthyofaunal communities of a tropical high island in Fiji

We surveyed freshwater ichthyofaunal communities in streams of Vanua Levu, Fiji, under a range of land cover to assess differential, seasonal effects on fish abundance and diversity. We collected fish from 32 families, 19 genera and 87 species, representing approximately 50% of the known Fijian freshwater and estuarine fish fauna. Position in reach was the strongest overall factor influencing fish abundance and diversity, particularly in the larger, steeper catchments. However, fish communities exhibited strong seasonal specificity with over half (55%) of species observed in only one season. There were greater numbers of estuarine and marine migrants and fishes with poor swimming ability in the dry season, with more schooling species, large predators and fish that prefer muddy benthos in the wet. In the more pristine catchments of Kubulau District, higher species abundance and diversity were observed in the wet season and were associated with significantly greater flow, pH and dissolved oxygen. We observed the opposite pattern for fish diversity and abundance from the more degraded catchments of Macuata Province. These results suggest that the wet season is having a net positive effect on habitable space for fishes in Kubulau and a net negative effect in Macuata, as species may be lost due to increased runoff from heavily cleared and cultivated catchments. Integrated water resource management across the full range of habitats utilized by Fiji’s freshwater fishes is recommended in order to maintain species diversity and abundance.     

Competition, predation and interspecific synchrony in cyclic small mammal communities

Although competition and predation are considered to be among the most important biotic processes influencing the distribution and abundance of species in space and time, the relative and interactive roles of these processes in communities comprised of cyclically fluctuating populations of small mammals are not well known. We examined these processes in and among populations of field voles, sibling voles, bank voles and common shrews in western Finland, using spatially replicated trapping data collected four times a year during two vole cycles (1987–1990 and 1997–1999). Populations of the four species exhibited relatively strong interspecific temporal synchrony in their multiannual fluctuations. During peak phases, we observed slight deviations from close temporal synchrony: field vole densities peaked at least two months earlier than those of either sibling voles or bank voles, while densities of common shrews peaked even earlier. The growth rates of all four coexisting small mammal species were best explained by their own current densities. The growth rate of bank vole populations was negatively related to increasing densities of field voles in the increase phase of the vole cycle. Apart from this, no negative effects of interspecific density, direct or delayed, were observed among the vole species. The growth rates of common shrew populations were negatively related to increasing total rodent (including water voles and harvest mice) densities in the peak phase of the vole cycle. Sibling voles appeared not to be competitively superior to field voles on a population level, as neither of these Microtus voles increased disproportionately in abundance as total rodent density increased. We suggest that interspecific competition among the vole species may occur, but only briefly, during the autumn of peak years, when the total available amount of rodent habitat becomes markedly reduced following agricultural practices. Our results nonetheless indicate that interspecific competition is not a strong determinant of the structure of communities comprised of species exhibiting cyclic dynamics. We suggest that external factors, namely predation and shortage of food, limit densities of vole populations below levels where interspecific competition occurs. Common shrews, however, appear to suffer from asymmetric space competition with rodents at peak densities of voles; this may be viewed as a synchronizing effect.     

Neutral processes and species sorting in benthic microalgal community assembly: effects of tidal resuspension

Benthic microalgae (BMA) provide vital food resources for heterotrophs and stabilize sediments with their extracellular secretions. A central goal in ecology is to understand how processes such as species interactions and dispersal, contribute to observed patterns of species abundance and distribution. Our objectives were to assess the effects of sediment resuspension on microalgal community structure. We tested whether taxa‐abundance distributions could be predicted using neutral community models (NCMs) and also specific hypotheses about passive migration: (i) As migration decreases in sediment patches, BMA α‐diversity will decrease, and (ii) As migration decreases, BMA community dissimilarity (β‐diversity) will increase. Co‐occurrence indices (checkerboard score and variance ratio) were also computed to test for deterministic factors, such as competition and niche differentiation, in shaping communities. Two intertidal sites (mudflat and sand bar) differing in resuspension regime were sampled throughout the tidal cycle. Fluorometry and denaturing gradient gel electrophoresis were utilized to investigate diatom community structure. Observed taxa‐abundances fit those predicted from NCMs reasonably well (R² of 0.68–0.93), although comparisons of observed local communities to artificial randomly assembled communities rejected the null hypothesis that diatom communities were assembled solely by stochastic processes. No co‐occurrence tests indicated a significant role for competitive exclusion or niche partitioning in microalgal community assembly. In general, predictions about relationships between migration and species diversity were supported for local community dynamics. BMA at low tide (lowest migration) exhibited reduced α‐diversity as compared to periods of immersion at both mudflat and sand bar sites. β‐diversity was higher during low tide emersion on the mudflat, but did not differ temporally at the sand bar site. In between‐site metacommunity comparisons, low‐ and high‐resuspension sites exhibited distinct community compositions while the low‐energy mudflats contained higher microalgal biomass and greater α‐diversity. To our knowledge this is the first study to test the relevance of neutral processes in structuring marine microalgal communities. Our results demonstrate a prominent role for stochastic factors in structuring local BMA community assembly, although unidentified nonrandom processes also appear to play some role. High passive migration, in particular, appears to help maintain species diversity and structure communities in both sand and muddy habitats.     

Synoptic patterns of meiofaunal and macrofaunal abundances and specific composition in littoral sediments

During recent years, many investigations on small zoobenthos have been performed at the island of Sylt. As these studies were carried out sporadically over many years and as different extraction methods were used, comparisons of the results have been hampered. Therefore, in August/September 1986, 24 sites were sampled and evaluated using one quantitative method throughout. Sites range from mud to exposed sand and from the sublittoral to the supralittoral. Macrofauna and the taxa Plathelminthes, Polychaeta, and Oligochaeta are determined to species level. Macrofaunal (>0.5 mm) abundance is highest in mud and continuously decreases with increasing exposure to wave action. Meiofaunal (<0.5 mm) abundance is less variable. Nematoda dominate in mud and muddy sand, Copepoda in sheltered and exposed sand, other taxa only intermittently. Related to surface area, no correlation between macro-and meiofaunal abundance is apparent. Plathelminthes and Copepoda reach highest abundance per surface area in sand but their per volume density is higher in mud and muddy sand. Related to sediment volume instead of surface area, the meiofaunal abundance pattern is very similar to the macrofaunal pattern. The faunal composition changes gradually along the tidal gradient without general faunal boundaries. On an averange, the faunal similarity of neighbouring sites is highest in Oligochaeta and lowest in Plathelminthes. Presumably, Oligochaeta tolerate wider ranges of environmental factors. This may explain the low number of oligochaete species. On the other hand, Plathelminthes seem to adapt to relatively narrow ranges of factors and their species richness is highest. Because of macrofaunameiofauna interaction it is suggested that the meiofaunal assemblage will be least stable in mud and muddy sand, and most stable in exposed sand.     

Salinity cascading and predator effects on consumer and producer community structure: a mesocosm experiment

1. An observed community structure is often shaped by a combination of bottom-top and top-bottom processes, affected by biotic and abiotic factors. These factors affect community structure either directly (each species separately) or indirectly, via other species. Few studies have observed the combined effects of biotic and abiotic factors on primary producers and consumer communities composed of numerous species. 2. This study investigated the combined effects of a predatory hemipteran and water salinity on abundance and species richness of the periphyton and arthropod communities in an artificial pool experiment. 3. The abundance and species richness of both periphyton and arthropod communities were affected by the combination of salinity and predator. 4. It is suggested that the observed consumer community is composed of arthropod species that vary in salinity tolerance and response to the predator. In addition, the abundance of euryhaline species or species that are not consumed by this particular predator increases indirectly in specific treatment combinations that eventually result in reduced interspecific competition. Periphyton variables were strongly correlated to densities of larval Ochlerotatus caspius (Diptera: Culicidae), suggesting that this species may be largely responsible for structuring the producer community. 5. It is suggested that O. caspius distribution is the result of female oviposition habitat selection that is manipulated by chemical signals. Therefore, chemical signals that inform about habitat suitability also play an important role in shaping both consumer and primary producer communities.     

Structure and dynamics of stream fish communities in the flood zone of the lower Purus River,Amazonas State,Brazil

The structure and dynamics of fish communities were characterized by richness, abundance, diversity and stability, during high-water and low-water periods. These analyses were performed on data from the flood zone of four streams in the lower Purus River, in the Brazilian Amazon. A total of 188 species of fish were collected, distributed among 29 families and eight orders. The statistical test showed a difference in community diversity between periods. The high-water period showed higher evenness in comparison to the low-water season. The low-water period was marked by high species abundance. A great variation in community composition between the flood and low-water periods was encountered. The adjustments for species abundance models suggested that stochastic events structure the communities. Most of the species showed a temporal variation of abundance indicating low community stability. Changes in the physico-chemical conditions of the water caused by the seasonal hydrological regime may be influencing the structuring of the fish communities.     

Population dynamics of a polychaete during three El Niño events: disentangling biotic and abiotic factors

The macrobenthic community in shallow soft-bottom areas in the Bay of Ancón, Peru, is characterised by low biodiversity due to low oxygen concentrations. During El Niño events, higher temperature and higher concentrations of dissolved oxygen induce a temporary increase in biodiversity. However, the structure and dynamics of the emerging communities vary strongly among events. The reasons for this variation are poorly understood, in particular the relative influence of abiotic vs biotic factors. To disentangle the roles of abiotic and biotic factors, population models based on detailed monitoring data of three El Niño events were developed focused on the population dynamics of one species in the community, the polychaete Sigambra bassi , which showed different responses in different El Niño events. Calculated and observed population dynamics are compared using root mean square deviation (RMSD). The results show that S. bassi abundance can be determined by abiotic environmental conditions. Besides, three biotic factors improved model performance in different El Niño events: negative density dependence in larval settlement, lower carrying capacity in the presence of other species and positive density dependence in adult survival. The results demonstrate how population models can be used to decode information hidden in long-term monitoring data of abiotic and biotic community parameters about factors driving population dynamics.     

Simulating small‐scale climate change effects–lessons from a short‐term field manipulation experiment on grassland arthropods

Climate change is expected to cause major consequences on biodiversity. Understanding species‐specific reactions, such as species shifts, species declines, and changes in population dynamics is a key issue to quantify large‐scale impacts of climate change on biotic communities. As it is often impossible or at least impracticable to conduct large‐scale experiments on biotic responses to climate change, studies at a smaller scale may be a useful alternative. In our study, we therefore tested responses of grassland arthropods (carabid beetles, spiders, grasshoppers) to simulated climate change in terms of species activity densities and diversity. We conducted a controlled field experiment by changing water and microclimatic conditions at a small scale (16 m²). Roof constructions were used to increase drought‐like conditions, whereas water supply was enhanced by irrigation. In all, 2 038 carabid beetles (36 species), 4 893 spiders (65 species), and 303 Orthoptera (4 species) were caught using pitfall traps from May to August, 2010. During our experiment, we created an artificial small‐scale climate change; and statistics revealed that these changes had short‐term effects on the total number of individuals and Simpson diversity of the studied arthropod groups. Moreover, our results showed that certain species might react very quickly to climate change in terms of activity densities, which in turn might influence diversity due to shifts in abundance patterns. Finally, we devised methodological improvements that may further enhance the validity of future studies.     

The macro-invertebrate communities of temporary pools in an intermittent stream in tropical Queensland

Nine pools were studied in an intermittent stream. They were close to each other but differed in size, substratum, amount of shade and duration of water presence. Initial conditions were set by wet season flooding, following which each pool developed its own character. Cluster analysis showed that communities changed substantially with time in both species composition and abundance, and that some initially similar communities diverged while some initially dissimilar ones converged.Principal Components Analysis showed that these community changes were due largely to the drying of the pools, and to seasonal effects. Specialised drying communities developed in the pools of longer duration (up to 8 months), but not in the short-lived pools (3–4 months). Apparently similar numerical responses in different pools were often caused by different suites of predominant species.The diversity of the fauna (total of 78 species) was high in comparison with similar habitats in non-tropical regions.The pattern of development of the pools' communities was much as expected from island biogeography theory, except that there was no relationship between species richness and duration and size of pools. The species complements were largely opportunistic, being governed by extreme environmental disturbance.     

Spatial structure of a subtidal macrobenthic community in the Bay of Veys (western Bay of Seine, English Channel)

The spatial distribution of the muddy fine sand community from the Bay of Veys (western English Channel) were investigated during spring and autumn 1997. A grid of 55 and 54 sites was sampled in March and October, respectively, using two replicates per site of a Hamon grab (0.25 m²) for macrofauna collection and an additional one for sediment analysis. A total of 172 species were sampled with a dominance of polychaetes, followed by crustaceans and bivalves. The species richness and abundance show low temporal changes despite higher values in October than in March. In March, the mean abundance was 165 ind. 0.5 m⁻²; in October, the mean abundance was 212 ind. 0.5 m⁻². Four assemblages from the Abra alba-Pectinaria koreni community were identified corresponding to a bathymetric and sedimentary gradient from muddy fine sands with high levels of fine particles in shallow water to fine sands in deeper water. The discussion focuses on factors prevailing on the spatial structure of sandy communities in the English Channel.