水稻花粉发育的分子机理

水稻的小孢子母细胞在花粉囊中进行减数分裂产生小孢子,小孢子进一步发育成花粉粒。当花粉成熟时,花粉粒从花粉囊中释放出来进行受精。分子生物学的研究已经发现了一些参与这一过程的基因,包括控制花粉囊组织的分化、小孢子母细胞的减数分裂、小孢子的发育和花药的开裂等。本文旨在总结水稻花粉发育过程及其调控分子机制的研究进展。     

粳稻和籼稻D1蛋白光抑制敏感性的差异与其编码基因序列结构特征的相关性分析(英文)

粳稻 (OryzasativaL .ssp .japonica)和籼稻 (O .sativassp .indica)对光抑制的敏感程度存在差异 ,它们的叶绿体光反应中心Ⅱ核心蛋白D1的稳定性不同。以菌落原位杂交法克隆了粳稻“95 16”和籼稻“籼优 6 3”叶绿体D1蛋白的编码基因psbA。核苷酸序列同源比较显示 :两者在启动子区和 5′_UTR完全相同 ;编码区存在着个别碱基的差异 ,但均位于三联体密码的第三位 ,不影响氨基酸编码特性 ,在蛋白质氨基酸序列上没有差异 ;在 3′_UTR内存在寡聚U长度的差异。因此 ,粳稻和籼稻D1蛋白对光抑制作用敏感性的差异与其蛋白质的氨基酸序列结构无关 ,可能与调控psbA基因表达的上游因子或光保护机制的差异有关。     

Genome-wide Investigation of Intron Length Polymorphisms and Their Potential as Molecular Markers in Rice (Oryza sativa L.)

Intron length polymorphisms (ILPs) have been used as geneticmarkers in some studies. However, a systematic investigationand large-scale exploitation of ILP markers has not been reported.In this study, we performed a genome-wide search of ILPs betweentwo subspecies (indica and japonica) in rice using the draftgenomic sequences of cultivars 93-11 (indica) and Nipponbare(japonica) and 32 127 full-length cDNA sequences of Nipponbareobtained from public databases. We identified 13 308 putativeILPs. Based on these putative ILPs, we developed 5811 candidateILP markers via electronic-PCR with primers designed in flankingexons. We further conducted experiment to verify the candidateILP markers. Out of 215 candidate ILP markers tested on 93-11,Nipponbare and their hybrid, we successfully exploited 173 codominantILP markers. Further analyses on 10 rice accessions showed thatthese ILP markers were widely applicable and most (71.1%) exhibitedsubspecies specificity. This feature suggests that ILPs wouldbe useful for the studies of genome evolution and inter-subspeciesheterosis and for cross-subspecies marker-assisted selectionin rice. In addition, by testing 51 pairs of the ILP primerson five Gramineae plants and three dicot plants, we found anotherdesirable characteristic of rice ILP markers that they havehigh transferability to other plants.     

水稻水溶性环氧化合物水解酶的生物信息学分析

水溶性环氧化合物水解酶（Soluble Epoxide Hydrolase,SEH）是一组催化环氧化合物水解为相应邻位二醇的酶类,在哺乳动物、植物、昆虫和微生物体内广泛存在。通过BLAST对水稻基因组的蛋白质数据库进行搜索,获得10个水溶性环氧化物水解酶（Soluble Epoxide Hydrolase SEH）sEH蛋白的同源序列。经分析发现这些基因在水稻不同胁迫处理下各个部位都有所表达,而且不同成员之间的表达模式存在较大的差异。水稻sEH蛋白主要参与角质层形成,应激反应,以及病原防御等生理过程,特别在脱毒过程中扮演着重要的角色。对蛋白质多序列联配和三级结构预测结果表明：水溶性环氧化合物水解酶的核心结构域由3个催化残基Asp、His和Asp形成三位一体的催化活性构象。这类基因的表达受抗逆环境诱导,其功能与抗逆性有关,为基因工程抗逆育种提供了参考。     

Codon Usage Biases of Transposable Elements and Host Nuclear Genes in Arabidopsis thaliana and Oryza sativa

Transposable elements (TEs) are mobile genetic entities ubiquitously distributed in nearly all genomes.High frequency of codons ending in A/T in TEs has been previously observed in some species.In this study,the biases in nucleotide composition and codon usage of TE transposases and host nuclear genes were investigated in the AT-rich genome of Arabidopsis thaliana and the GC-rich genome of Oryza sativa.Codons ending in A/T are more frequently used by TEs compared with their host nuclear genes.A remarkable p...     

Cloning and Characterization of Catalases from Rice,Oryza sativa L.

Catalase is the major H₂O₂-scavenging enzyme in all aerobic organisms. From the cDNA sequences of three rice (Oryza sativa L.) genes that encode for predicted catalases (OsCatA, OsCatB, and OsCatC), complete ORFs were subcloned into pET21a and expressed as (His)₆-tagged proteins in Escherichia coli. The recombinant (His)₆-polypeptides were enriched to apparent homogeneity and characterized. With H₂O₂ as substrate, the highest catalase k _cat value (20±1.71×10^?3 min^?1) was found in recombinant OsCatB. The optimum temperatures for catalase activity were 30 °C for OsCatA and OsCatC and 25 °C for OsCatB, while the pH optima were 8.0, 7.5, and 7.0 for OsCatA, OsCatB, and OsCatC respectively. All the catalases were inhibited by sodium azide, β-mercaptoethanol, and potassium cyanide, but only weakly by 3-amino-1,2,4-triazole. The various catalases exhibited different catalase activities in the presence of different salts at different concentrations, OsCatC showing higher salt inhibitory effects than the two other OsCats.     

水稻雄性不育恢复系明恢63的感光基因分析

水稻恢复系明恢63是中国应用面积最大、利用最广泛的恢复系。利用抽穗期感光性近等基因系EG0～EG7及ER～LR对明恢63进行的分析表明,明恢63在E1、E2、E3位点分别带有E1、e3、E3基因,在Se-1位点带无感光功能的Se-1^e基因。进一步用抽穗期QTL近等基因系NIL(Hd1)和NIL（Hd4)进行的研究表明,明恢63带有显性感光基因E1和无感光功能的Se-1^e基因,并推测明恢63带有能抑制E,基因表达的隐性抑制基因。认为籼型杂交稻抽穗期受不育系和恢复系感光基因及感光性抑制基因的共同作用。初步讨论了明恢63广适性的遗传基础。     

转反义OsRACK1基因增强水稻抗旱能力

RAC1是一种多功能支架蛋白,广泛参与植物生长发育过程的调节。利用反义RNA技术抑制水稻（Oryzasativa）RACK1基因的表达,分析了RACK1基因在响应干旱胁迫中的功能。采用实时定量PCR对获得的转基因植株的RACK1基因表达进行分析,结果表明转基因水稻RACK1基因表达受抑制程度达到50％左右。与非转基因水稻（对照）相比,转基因水稻耐干旱能力强,膜脂过氧化程度低且丙二醛的含量少,SOD活性高。这些结果表明,RACK1蛋白负调节水稻对干旱胁迫的耐受过程,并且这种调节作用在很大程度上与植株体内的氧化还原系统有关。     

长穗颈水稻的内源GA1、IAA和ABA含量变化

分别以携有长穗颈基因eui1、eui2和野生型基因Eui的协青早不育系和保持系6个水稻品种为材料,测定它们在抽穗始期植株中内源GA1、IAA和ABA含量的变化。结果表明,携有eui1和eui2基因的水稻可以在植株体内产生大量内源GA1,携有eui1基因的GA1含量比携有eui2基因的高。携有eui1基因的ABA含量最高,携有eui2基因的其次,而携有Eui基因的最低。IAA含量也表现出同样的趋势。表明长穗颈基因主要是通过调节内源GA1含量促进水稻最上节间的剧烈伸长。     

Biochemical and Crystallographic Characterization of the Starch Branching Enzyme I (BEI) from Oryza sativa L

Starch branching enzyme (SBE) catalyzes the cleavage of α-1.4-linkages and the subsequent transfer of α-1.4 glucan to form an α-1.6 branch point in amylopectin. We overproduced rice branching enzyme I (BEI) in Escherichia coli cells, and the resulting enzyme (rBEI) was characterized with respect to biochemical and crystallographic properties. Specific activities were calculated to be 20.8 units/mg and 2.5 units/mg respectively when amylose and amylopectin were used as substrates. Site-directed mutations of Tyr235, Asp270, His275, Arg342, Asp344, Glu399, and His467 conserved in the α-amylase family enzymes drastically reduced catalytic activity of rBEI. This result suggests that the structures of BEI and the other α-amylase family enzymes are similar and that they share common catalytic mechanisms. Crystals of rBEI were grown under appropriate conditions and the crystals diffracted to a resolution of 3.0 Å on a synchrotron X-ray source.     

A calcium- and phospholipid-dependent protein kinase from rice (Oryza sativa) leaves

Protein kinases in plants have not been examined in detail, but protein phosphorylation has been shown to be essential for regulating plant growth via the signal transduction system. A Ca²⁺- and phospholipid-dependent protein kinase, possibly involved in the intracellular signal transduction system from rice leaves, was partially purified by sequential chromatography on DE52, Phenyl Superose and Superose 12. This protein kinase phosphorylated the substrate, histone III-S, in the presence of Ca²⁺ and phosphatidylserine. The apparent molecular mass of the Ca²⁺- and phosphatidylserine-dependent protein kinase (Ca²⁺/PS PK), determined by phosphorylation in SDS-polyacrylamide gel containing histone III-S, was 50 kDa. The protein kinase differed from Ca²⁺-dependent protein kinase (CDPK) in rice leaves in that Ca²⁺/PS PK showed phospholipid dependency and the molecular mass of Ca²⁺/PS PK exceeded that of CDPK. Investigations were carried out on changes in Ca²⁺/PS PK and CDPK activity in the cytosolic and membrane fractions during germination. The maximum activity of Ca²⁺/PS PK in the cytosolic fraction was observed before imbibition and that of CDPK in the membrane fraction was noted at 6 days following imbibition. Protein kinases are likely to regulate plant growth through protein phosphorylation.     

水稻蔗糖转运基因家族研究进展

蔗糖是韧皮部同化碳运输的主要形式,植物蔗糖转运体(SUT,Sucrose transporters)在参与植物碳素分配中起着重要的作用.编码SUT蛋白的基因在许多双子叶和单子叶植物中都已被分离.目前已经在水稻中鉴定出了5个蔗糖共运体(Sucrose symporter)基因家族成员.对这5个成员在水稻中的鉴定、克隆和表达分析,以及其蛋白结构、分类与进化进行了综述.这些信息可用于探索杂交稻高产的同化物分配和运输的分子原因.     

水稻双受精过程的细胞形态学及时间进程的观察

应用常规石蜡切片和荧光显微镜观察水稻（Oryza sativa）受精过程中雌雄性细胞融合时的形态特征及时间进程,确定合子期,为花粉管通道转基因技术的实施提供理论依据。结果表明：授粉后,花粉随即萌发,花粉管进入羽毛状柱头分支结构的细胞间隙,继续生长于花柱至子房顶部的引导组织的细胞间隙中,而后进入子房,在子房壁与外珠被之间的缝隙中向珠孔方向生长,花粉与花粉管均具有明显的绿色荧光。花粉管经珠孔及珠心表皮细胞间隙进入一个助细胞,释放精子。精子释放前,两极核移向卵细胞的合点端：两精子释放于卵细胞与中央细胞的间隙后,先后脱去细胞质,然后分别移向卵核和极核,移向卵核的精核快于移向极核的精核：精核与两极核在向反足细胞团方向移动的过程中完成雌雄核融合。大量图片显示了雌雄性核融合的详细过程以及多精受精现象。水稻受精过程经历的时间表如下：授粉后,花粉在柱头萌发：花粉萌发至花粉管进入珠孔大约需要0．5小时：授粉后0．54,时左右,花粉管进入一个助细胞,释放精子：授粉后0．5—2．5小时,精卵融合形成合子：授粉后约10．0小时,合子第1次分裂,合子期为授粉后2．5-10．04,时：授粉后1．0-3．04,时,精核与两极核融合：授粉后约5．0小时,初生胚乳核分裂。’     

粳稻穗部性状遗传分析

从粳稻（Oryzasativassp.japonica）RIL群体中选取每穗颖花数极端少的品系丙堡3201和丙堡3205及每穗颖花数极端多的品系丙堡3145和丙堡3214,配制丙堡3201×丙堡3145和丙堡3214×丙堡3205两个组合的P1、P2、F1、B1、B2和F26个世代,调查每穗颖花数、每穗实粒数、穗长、一次枝梗数和二次枝梗数的表型分布,并运用主基因＋多基因混合遗传模型,对这5个性状进行了遗传分析。结果表明,每穗颖花数性状在2个组合的各分离世代均未出现超亲分离,而其它4个性状均有不同程度的超亲分离。一次枝梗数受1对主基因＋多基因控制;其余4个性状均受2对主基因＋多基因控制。每穗颖花数、每穗实粒数、穗长和二次枝梗数4个性状以主基因遗传为主,一次枝梗数性状以多基因遗传为主。     

缺Cu~（2＋）和Zn~（2＋）对水稻OsNRAMP家族基因表达与主要金属离子吸收的影响

对野生型水稻进行缺Cu2＋和Zn2＋处理,利用定量RT-PCR技术分析OsNARAMP家族不同基因的表达情况,并采用ICP-MS技术检测在水稻根、茎叶中Fe、Zn、Cu和Mn等元素的积累情况。结果表明水稻中OsNRAMP家族有9个基因,可分为3个亚类;OsNRAMP5可能参与了Cu2＋的吸收和转运,而OsNRAMP2和OsNRAMP3可能参与Zn2＋吸收和转运。同时缺Cu2＋和Zn2＋能刺激Fe2＋离子在水稻根和茎叶中的积累,减缓Mn2＋离子在根中的吸收;而缺Cu2＋减缓水稻中Zn2＋离子的吸收。这些金属离子吸收的情况和OsNRAMP家族可能存在密切关系。     

Molecular cloning and structural analysis of a novel Rac gene osRACB in rice (Oryza sativa L.)

Rac is a subfamily of small GTP-binding protein family. Its molecular weight is between 20 and 30 kilodaltons. As a signal protein, Rac directly or indirectly participates in many physiological processes, such as the regulation of cytoskeleton and the transduction of stress-induced signal. So Rac is also named ?molecular switch? The switch is based on the cycle from a GTP-bound 憃n?to a GDP-bound 憃ff?state[1]. In the superfamily of GTP-binding protein, only heterotrimeric G protein, Ra…     

Molecular mechanisms regulating Pi-signaling and Pi homeostasis under OsPHR2, a central Pi-signaling regulator, in rice

Phosphorus (P) is one of the most important major mineral elements for plant growth and metabolism. Plants have evolved adaptive regulatory mechanisms to maintain phosphate (Pi) homeostasis by improving phosphorus uptake, translocation, remobilization and efficiency of use. Here we review recent advances in our understanding of the OsPHR2-mediated phosphate-signaling pathway in rice. OsPHR2 positively regulates the low-affinity Pi transporter OsPT2 through physical interaction and reciprocal regulation of OsPHO2 in roots. OsPT2 is responsible for most of the OsPHR2-mediated accumulation of excess Pi in shoots. OsSPX1 acts as a repressor in the OsPHR2-mediated phosphate-signaling pathway. Some mutants screened from ethyl methanesulfonate (EMS)-mutagenized M2 population of OsPHR2 overexpression transgenic line removed the growth inhibition, indicating that some unknown factors are crucial for Pi utilization or plant growth under the regulation of OsPHR2.